mRNA_M-pyrifera_M_contig113271.2772.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113271.2772.1
Unique NamemRNA_M-pyrifera_M_contig113271.2772.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A3N4INX0_ASCIM (Chromatin modification-related protein n=1 Tax=Ascobolus immersus RN42 TaxID=1160509 RepID=A0A3N4INX0_ASCIM)

HSP 1 Score: 79.3 bits (194), Expect = 8.140e-16
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQIL 165
            + TYC+CN   + G M+GCD D C     WFHW CVGIDKEPEG+WFC EC Q+L
Sbjct:  287 DRTYCFCNS-VSWGNMVGCDNDDCKYE--WFHWSCVGIDKEPEGQWFCSEC-QLL 337          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A4P9ZYK3_9FUNG (The Ing1 Phd finger in complex with A histone H3k4me3 peptide (Fragment) n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZYK3_9FUNG)

HSP 1 Score: 71.2 bits (173), Expect = 6.420e-15
Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECV 156
            E TYCYCN+  + G M+ CD ++C +   WFH+QCVG++ +P+G+W+C EC+
Sbjct:   14 EPTYCYCNQ-VSYGEMVACDDENCDIE--WFHYQCVGLNSQPKGKWYCSECL 62          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A2S5BGH1_9BASI (PHD-type domain-containing protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BGH1_9BASI)

HSP 1 Score: 76.6 bits (187), Expect = 8.670e-15
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQILGLDSAT 183
            E  YCYCNR  + G MI C+ + C     WFH +CVG+DK PEG+W+C +CV+ L +D AT
Sbjct:  371 EPLYCYCNR-VSFGEMIACENEDCDRE--WFHLECVGLDKAPEGQWYCDDCVEKLDIDPAT 428          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A0K3CLT3_RHOTO (Chromatin modification-related protein n=4 Tax=Rhodosporidium toruloides TaxID=5286 RepID=A0A0K3CLT3_RHOTO)

HSP 1 Score: 76.3 bits (186), Expect = 9.170e-15
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQILGLDSAT 183
            E TYCYC+R  + G MI C+ D C     WFH +CVG+DK PEG W+C +CV+ L LD  T
Sbjct:  294 EPTYCYCSR-VSFGEMIACENDDCSRE--WFHLECVGLDKAPEGAWYCDDCVRDLNLDPKT 351          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A5C5G492_9BASI (Chromatin modification-related protein n=1 Tax=Rhodotorula diobovata TaxID=5288 RepID=A0A5C5G492_9BASI)

HSP 1 Score: 75.5 bits (184), Expect = 1.830e-14
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQILGLDSATPAAR 195
            E TYCYCNR  + G MI C+ + C     WFH  CVG++K PEG W+C +CV+ L LD AT   R
Sbjct:  303 EPTYCYCNR-VSFGEMIACENEDCSRE--WFHLGCVGLEKAPEGVWYCDDCVRELNLDPATMQRR 364          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A4U0VXH1_9BASI (Chromatin modification-related protein n=1 Tax=Rhodotorula sp. CCFEE 5036 TaxID=1965284 RepID=A0A4U0VXH1_9BASI)

HSP 1 Score: 75.1 bits (183), Expect = 2.900e-14
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQILGLDSAT 183
            E  YCYCNR  + G MI C+ + C     WFH +CVG+DK PEG W+C +CV  L +D AT
Sbjct:  343 EPVYCYCNR-VSFGEMIACENEDCARE--WFHLECVGLDKAPEGAWYCDDCVAELNIDPAT 400          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A317XQ35_9BASI (PHD-type domain-containing protein (Fragment) n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XQ35_9BASI)

HSP 1 Score: 65.9 bits (159), Expect = 5.640e-13
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCREC 153
            E  YCYC++  + G M+ CD D C +   WFH+QCVG++ +P G+W+CR C
Sbjct:    4 EPRYCYCDQ-VSFGNMVACDNDDCELE--WFHYQCVGLESQPRGKWYCRFC 51          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A8J9WUR9_9CHLO (Inhibitor of growth protein 4 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WUR9_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 6.620e-13
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQILGLDSATP 186
            E  YCYC R  + G M+ CD   CPV   WFH++CVG+D +P+G+W+CR+C  +       P
Sbjct:  215 EPVYCYCRR-VSFGEMVACDNLDCPVE--WFHFECVGMDAQPKGKWYCRDCEALKEAGKLPP 273          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A2X0MB15_9BASI (Chromatin modification-related protein n=3 Tax=Microbotryum TaxID=34416 RepID=A0A2X0MB15_9BASI)

HSP 1 Score: 70.9 bits (172), Expect = 8.660e-13
Identity = 27/56 (48.21%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQILG 168
            E TYC+C R  + G M+GC+ + C     WFH++CVG+D  P GEW+CREC   +G
Sbjct:  306 EPTYCFCER-VSFGQMVGCENEDCSRE--WFHFECVGLDAPPIGEWYCRECAATVG 358          
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Match: A0A8H4AG33_GIGMA (Chromatin modification-related protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H4AG33_GIGMA)

HSP 1 Score: 68.9 bits (167), Expect = 1.340e-12
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRECVQI 162
            E  YC C RP   G MI CD+ SC  G  W+HW+CVG+ K+P G+W C +C  I
Sbjct:  128 ELVYCICKRPE-FGQMIQCDHPSCVTG--WYHWECVGLTKQPSGQWLCPDCEFI 178          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113271.2772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3N4INX0_ASCIM8.140e-1660.00Chromatin modification-related protein n=1 Tax=Asc... [more]
A0A4P9ZYK3_9FUNG6.420e-1548.08The Ing1 Phd finger in complex with A histone H3k4... [more]
A0A2S5BGH1_9BASI8.670e-1550.82PHD-type domain-containing protein n=1 Tax=Rhodoto... [more]
A0A0K3CLT3_RHOTO9.170e-1552.46Chromatin modification-related protein n=4 Tax=Rho... [more]
A0A5C5G492_9BASI1.830e-1450.77Chromatin modification-related protein n=1 Tax=Rho... [more]
A0A4U0VXH1_9BASI2.900e-1450.82Chromatin modification-related protein n=1 Tax=Rho... [more]
A0A317XQ35_9BASI5.640e-1347.06PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8J9WUR9_9CHLO6.620e-1343.55Inhibitor of growth protein 4 n=1 Tax=Coccomyxa sp... [more]
A0A2X0MB15_9BASI8.660e-1348.21Chromatin modification-related protein n=3 Tax=Mic... [more]
A0A8H4AG33_GIGMA1.340e-1250.00Chromatin modification-related protein n=1 Tax=Gig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113271contigM-pyrifera_M_contig113271:97..300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score73.2
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog5286.M7WVA6
KEGG koko:K11319,ko:K11346
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Inhibitor of growth proteins N-terminal histone-binding
EggNOG OGs2YEYU@29000,3ABBJ@33154,3P8AC@4751,3V2PQ@5204,COG5034@1,KOG1973@2759
COG Functional cat.B
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.7673254-CDS-M-pyrifera_M_contig113271:96..3001622815647.7673254-CDS-M-pyrifera_M_contig113271:96..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113271 97..300 +
1692277503.897701-CDS-M-pyrifera_M_contig113271:96..3001692277503.897701-CDS-M-pyrifera_M_contig113271:96..300Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113271 97..300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113271.2772.1prot_M-pyrifera_M_contig113271.2772.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113271 97..300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113271.2772.1

>prot_M-pyrifera_M_contig113271.2772.1 ID=prot_M-pyrifera_M_contig113271.2772.1|Name=mRNA_M-pyrifera_M_contig113271.2772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=68bp
EETYCYCNRPAAVGPMIGCDYDSCPVGGGWFHWQCVGIDKEPEGEWFCRE
CVQILGLDSATPAARAK*
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mRNA from alignment at M-pyrifera_M_contig113271:97..300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113271.2772.1 ID=mRNA_M-pyrifera_M_contig113271.2772.1|Name=mRNA_M-pyrifera_M_contig113271.2772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig113271:97..300+ (Macrocystis pyrifera P11B4 male)
GAGGAAACCTACTGCTACTGCAACAGACCGGCGGCGGTGGGGCCAATGAT CGGATGCGACTACGACTCTTGCCCTGTCGGAGGAGGGTGGTTCCACTGGC AATGCGTCGGAATCGACAAGGAACCGGAGGGAGAGTGGTTCTGCAGGGAA TGCGTGCAAATCCTAGGTCTCGACTCCGCCACGCCAGCTGCCAGAGCGAA ATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113271:97..300+

>mRNA_M-pyrifera_M_contig113271.2772.1 ID=mRNA_M-pyrifera_M_contig113271.2772.1|Name=mRNA_M-pyrifera_M_contig113271.2772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=408bp|location=Sequence derived from alignment at M-pyrifera_M_contig113271:97..300+ (Macrocystis pyrifera P11B4 male)
GAGGAAACCTACTGCTACTGCAACAGACCGGCGGCGGTGGGGCCAATGAT
CGGATGCGACTACGACTCTTGCCCTGTCGGAGGAGGGTGGTTCCACTGGC
AATGCGTCGGAATCGACAAGGAACCGGAGGGAGAGTGGTTCTGCAGGGAA
TGCGTGCAAATCCTAGGTCTCGACTCCGCCACGCCAGCTGCCAGAGCGAA
ATAAGAGGAAACCTACTGCTACTGCAACAGACCGGCGGCGGTGGGGCCAA
TGATCGGATGCGACTACGACTCTTGCCCTGTCGGAGGAGGGTGGTTCCAC
TGGCAATGCGTCGGAATCGACAAGGAACCGGAGGGAGAGTGGTTCTGCAG
GGAATGCGTGCAAATCCTAGGTCTCGACTCCGCCACGCCAGCTGCCAGAG
CGAAATAA
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