mRNA_M-pyrifera_M_contig11325.2767.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11325.2767.1
Unique NamemRNA_M-pyrifera_M_contig11325.2767.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11325.2767.1 vs. uniprot
Match: D8LNQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNQ4_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.030e-80
Identity = 158/379 (41.69%), Postives = 202/379 (53.30%), Query Frame = 1 
Query:    1 ASAMDVTAMLCVQPRMSHWRKQEEVERDLGLEEKAVSKQFMNLGGGTHGKKNHDEAVKKLAAAGVYRVLGSKYPRRVWWLAFTGKGGAEPPFNAREDVHEFT-----SEKNRAVDQIIPGPGAAITARDERGSASVIREGGGGACGSVGWVRSDAMQMMMSSPTYGIFLNLDELSRFLDVPKQALREVLLPT-STSASEDHDMFLKTFGIFRERHFNMPCWGLLGRGHIFALGFDVYSSLLSATHQKTFWTGQQFR--STGQPENPPPGCLASD--CLEICELAKDVFHSLQCRNCEPNCPRKTPRHCWDFMRVESPETSIVPLEKPGELGAKFECVHCGSIHIAVPLPAKGLVLGGERWSIDDRAVRLVFGSVHAWTK 1107
            A+  D+  +LC QP    WR QEEVE  LGLE+ A+S  +  LGG   G         +L  AGV+R  G   P RVWWLAF GK    P F  R + +        +E++R   +       A TA++                      RSDAM  M+S+PT+G FLNL ELSR LD+P   LR VL P  + +++ +H++FL TFGI R  H   P W LLG GH+ ALG D    LLS   Q  FW+  + R  +TG P     GC A     LE   L  D+  SLQCRNC+PNCP   PRH W+FMR ES  T I+ ++   EL   FECV+C SIH+ VPLPAKGL    + WS+ D  VR  F S+ +W +
Sbjct:   19 ATGPDIVTLLCTQPVHCCWRHQEEVETALGLEKNAISVFYQGLGGRGSGATKGKRIQDQLEKAGVFRSQGDTKPHRVWWLAFRGKDATRPRFEDRGEDNLCVPAGSGAEEHRGTPRDTNPAVGATTAQEXXXXXXXXXXXXXXXXLPEKKKRSDAMHAMVSTPTWGYFLNLFELSRLLDLPADDLRAVLQPPCARNSTIEHELFLSTFGISRGWHAGNPAWHLLGCGHVVALGEDACMELLSRPPQPFFWSAMKRREPNTGIPWTV--GCEAETPLLLEAHRLTLDIERSLQCRNCKPNCPINGPRHSWEFMRCESEATEILGVD--AELKVNFECVNCHSIHLGVPLPAKGLGYEVQSWSMADEVVRGTFDSISSWLR 393
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BLAST of mRNA_M-pyrifera_M_contig11325.2767.1 vs. uniprot
Match: A0A6H5K0V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V0_9PHAE)

HSP 1 Score: 231 bits (588), Expect = 1.430e-68
Identity = 137/334 (41.02%), Postives = 175/334 (52.40%), Query Frame = 1 
Query:  130 GGGTHGKKNHDEAVKKLAAAGVYRVLGSKYPRRVWWLAFTGKGGAEPPFNAREDVHEFT-----SEKNRAVDQIIPGPGAAITARDERGSASVIREGGGGACGSVGWVRSDAMQMMMSSPTYGIFLNLDELSRFLDVPKQALREVLLPTSTSASE-DHDMFLKTFGIFRERHFNMPCWGLLGRGHIFALGFDVYSSLLSATHQKTFWTGQQFRSTGQPENPPPGCLASD--CLEICELAKDVFHSLQCRNCEPNCPRKTPRHCWDFMRVESPETSIVPLEKPGELGAKFECVHCGSIHIAVPLPAKGLVLGGERWSIDDRAVRLVFGSVHAWTK 1107
            G G+   K     + +L  AGV+R LG+  PRRVWWLA+ GK    P F  R + +        +E++   ++  PG        +E    +  R         V WVRSDAM  M+S+PT+G FLNL ELSR LD+P   LR VL P     S  +H++FL TFGI R  H   P W LLG GH  ALG D    LLS   Q  F +  + R          GC A     L    L+ DV  SLQCRNC+PNCP   PRH W+FMR ES  T I+ ++   EL   FECV+C SIH+ VP PAKG+    + WS+ D  VR  F S+ +W +
Sbjct:    5 GRGSGATKGRRVLINRLEEAGVFRWLGTNSPRRVWWLAYRGKDATRPRFEDRGEDNLCEPAGSGAEEHVGTERYQPGLTPDEQQEEELPENTKRR---------VAWVRSDAMHAMVSTPTWGYFLNLFELSRLLDLPADDLRAVLQPPCARKSAIEHELFLSTFGISRGCHDGKPAWHLLGCGHAVALGEDACMELLSRPPQAVFRSAMKRREPNAGIPWTVGCEAETPLLLNAHRLSLDVERSLQCRNCKPNCPINGPRHSWEFMRGESEATEILGVD--AELRVNFECVNCHSIHLGVPFPAKGVGSEVQSWSMADEVVRGTFDSISSWLR 327
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BLAST of mRNA_M-pyrifera_M_contig11325.2767.1 vs. uniprot
Match: A0A6H5KB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB44_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.780e-28
Identity = 77/187 (41.18%), Postives = 98/187 (52.41%), Query Frame = 1 
Query:  121 MNLGGGTHGKKNHDEAVKKLAAAGVYRVLGSKYPRRVWWLAFTGKGGAEPPFNAREDVHEFTSEKNRAVDQIIPGPGAAITARDERGS--ASVIREGGGGA---CGSVGWVRSDAMQMMMSSPTYGIFLNLDELSRFLDVPKQALREVLLPTSTSASE-DHDMFLKTFGIFRERHFNMPCWGLLGRG 663
            M LGG      N    + +L  AGV+R LG+   R VWWLAFTGK    P F  R + +      + A + +        T RD   +  A+  +EGGG +      V WVRSDAM  M+S+PT+G FLNL ELSR LD+P   LR +L P     S  +H++FL TFGI    H   P W LLG G
Sbjct:    1 MGLGGRGSRATNGRRVLDRLEEAGVFRWLGTNSLRSVWWLAFTGKDATRPRFEDRGEDNLCEPAGSGAEEHVG-------TLRDTNPAVGATTAQEGGGSSEMHITMVAWVRSDAMHAMVSTPTWGYFLNLFELSRVLDLPADDLRAMLQPPCARKSTIEHELFLSTFGIIPGCHDGKPAWHLLGCG 180
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11325.2767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNQ4_ECTSI2.030e-8041.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0V0_9PHAE1.430e-6841.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB44_9PHAE3.780e-2841.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11325contigM-pyrifera_M_contig11325:435..2207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1107
Cds size1098
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11325.2767.1prot_M-pyrifera_M_contig11325.2767.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11325 444..2207 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.554787-UTR-M-pyrifera_M_contig11325:434..4431622815647.554787-UTR-M-pyrifera_M_contig11325:434..443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11325 435..443 +
1692277503.8055944-UTR-M-pyrifera_M_contig11325:434..4431692277503.8055944-UTR-M-pyrifera_M_contig11325:434..443Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11325 435..443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.5662322-CDS-M-pyrifera_M_contig11325:443..8591622815647.5662322-CDS-M-pyrifera_M_contig11325:443..859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11325 444..859 +
1692277503.8141503-CDS-M-pyrifera_M_contig11325:443..8591692277503.8141503-CDS-M-pyrifera_M_contig11325:443..859Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11325 444..859 +
1622815647.5765593-CDS-M-pyrifera_M_contig11325:1334..16401622815647.5765593-CDS-M-pyrifera_M_contig11325:1334..1640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11325 1335..1640 +
1692277503.8225048-CDS-M-pyrifera_M_contig11325:1334..16401692277503.8225048-CDS-M-pyrifera_M_contig11325:1334..1640Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11325 1335..1640 +
1622815647.5859256-CDS-M-pyrifera_M_contig11325:1831..22071622815647.5859256-CDS-M-pyrifera_M_contig11325:1831..2207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11325 1832..2207 +
1692277503.8309226-CDS-M-pyrifera_M_contig11325:1831..22071692277503.8309226-CDS-M-pyrifera_M_contig11325:1831..2207Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11325 1832..2207 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11325.2767.1

>prot_M-pyrifera_M_contig11325.2767.1 ID=prot_M-pyrifera_M_contig11325.2767.1|Name=mRNA_M-pyrifera_M_contig11325.2767.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=366bp
MDVTAMLCVQPRMSHWRKQEEVERDLGLEEKAVSKQFMNLGGGTHGKKNH
DEAVKKLAAAGVYRVLGSKYPRRVWWLAFTGKGGAEPPFNAREDVHEFTS
EKNRAVDQIIPGPGAAITARDERGSASVIREGGGGACGSVGWVRSDAMQM
MMSSPTYGIFLNLDELSRFLDVPKQALREVLLPTSTSASEDHDMFLKTFG
IFRERHFNMPCWGLLGRGHIFALGFDVYSSLLSATHQKTFWTGQQFRSTG
QPENPPPGCLASDCLEICELAKDVFHSLQCRNCEPNCPRKTPRHCWDFMR
VESPETSIVPLEKPGELGAKFECVHCGSIHIAVPLPAKGLVLGGERWSID
DRAVRLVFGSVHAWTK
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mRNA from alignment at M-pyrifera_M_contig11325:435..2207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11325.2767.1 ID=mRNA_M-pyrifera_M_contig11325.2767.1|Name=mRNA_M-pyrifera_M_contig11325.2767.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1773bp|location=Sequence derived from alignment at M-pyrifera_M_contig11325:435..2207+ (Macrocystis pyrifera P11B4 male)
GCTTCGGCGATGGATGTTACTGCGATGTTGTGCGTTCAGCCACGAATGAG
TCACTGGCGCAAGCAGGAAGAAGTCGAACGCGACCTGGGGCTCGAAGAGA
AGGCCGTCAGCAAGCAGTTCATGAACTTGGGCGGAGGCACGCATGGCAAG
AAGAACCACGACGAGGCCGTCAAGAAGCTCGCGGCAGCTGGAGTCTACCG
AGTCTTGGGTAGCAAGTATCCGAGGAGGGTGTGGTGGCTAGCCTTCACTG
GCAAGGGGGGTGCGGAACCCCCATTCAACGCACGGGAGGATGTTCACGAA
TTCACATCGGAGAAGAACCGTGCAGTAGACCAAATCATCCCCGGCCCCGG
GGCTGCTATTACGGCAAGGGACGAGCGGGGTAGCGCCTCTGTTATACGCG
AGGGGGGGGGGGGGGCGTGCGGCTCGTACGGCAGGAGGTAGCGATGTCGG
CACTGGTGAAGACTCACAGAAAATGCGGCAAAGGTGTGCCCCTTCACTGT
GGTAGCGTTCCCTGTTTTGATTACCATCGTACACGGTTGTTTGCTTCGGT
GGGCCGTTCAATTGTATCGGCCATCTTGTACCAAAGGGGTAGAGGGCCTT
TTGCCGGTGACCACGATACTCGCACGTCATCAGCTGGCGTCCGTCCATGC
TATTCGTACGTCAGATGTTTACCCTTACGTCGTTGTGCAAGTGTAAAGAA
AGACCGGTACACACGTTCACAGAGTTAATTTTCCTTGCTTACCGTTGGCC
TTGCGTTCCCCGACGCCGTCGCTGGTGCAGTGCACGCGTGTTGTTTGCGT
GGCGAAATGCGTATGGTTAGTCTAGGATTGATGTACAGTTTTATCTCGAG
CATGTTCTTAGCCGTGTGTGTAACCTTTGTACTAATCTGACGACCCGCAG
GGTTGGCTGGGTACGGAGCGACGCCATGCAGATGATGATGTCTTCTCCAA
CATACGGAATATTTCTCAATTTAGACGAGCTGTCAAGATTCCTTGATGTG
CCCAAGCAAGCCCTGAGAGAGGTACTGCTGCCCACTTCCACATCCGCAAG
TGAAGATCACGACATGTTCCTGAAGACGTTCGGCATCTTCAGGGAACGGC
ACTTCAACATGCCCTGCTGGGGCCTGCTCGGGCGCGGACACATATTCGCA
CTGGGATTTGACGTCTACTCGAGTCTCCTGAGCGCTACACACCAGAAAAC
TTTCTGGTGAGTAGAAGATGTACTGTACATGTCACGTTTTGCACCACCGA
AATGTGTCGGTACCACACGTTTTATTGTCCATGCGACTGCTTGAAGATGC
GCACGTCTGCGGTGTTCGTCGCGAACTCTTACTACATGGATGCGTCTGTA
TTATCTTGCTCACTTTTGCCCAAAAACGTATTGCTGTGTTGGTGCAGGAC
CGGGCAGCAATTCCGGTCAACAGGGCAACCCGAAAACCCGCCGCCTGGAT
GTCTGGCAAGCGATTGCTTGGAGATTTGCGAGCTCGCGAAGGATGTTTTC
CACTCATTGCAGTGCCGGAACTGCGAGCCAAACTGTCCTCGCAAAACCCC
CCGACACTGTTGGGATTTTATGCGGGTGGAGTCGCCGGAAACGTCTATCG
TACCGTTGGAGAAACCAGGGGAGCTCGGCGCCAAGTTCGAGTGTGTTCAC
TGCGGGTCCATCCATATTGCGGTGCCCTTGCCAGCGAAGGGTTTGGTGCT
TGGCGGCGAAAGGTGGTCGATAGATGACAGGGCTGTACGGTTGGTGTTCG
GGTCAGTTCACGCGTGGACGAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11325:435..2207+

>mRNA_M-pyrifera_M_contig11325.2767.1 ID=mRNA_M-pyrifera_M_contig11325.2767.1|Name=mRNA_M-pyrifera_M_contig11325.2767.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2196bp|location=Sequence derived from alignment at M-pyrifera_M_contig11325:435..2207+ (Macrocystis pyrifera P11B4 male)
ATGGATGTTACTGCGATGTTGTGCGTTCAGCCACGAATGAGTCACTGGCG
CAAGCAGGAAGAAGTCGAACGCGACCTGGGGCTCGAAGAGAAGGCCGTCA
GCAAGCAGTTCATGAACTTGGGCGGAGGCACGCATGGCAAGAAGAACCAC
GACGAGGCCGTCAAGAAGCTCGCGGCAGCTGGAGTCTACCGAGTCTTGGG
TAGCAAGTATCCGAGGAGGGTGTGGTGGCTAGCCTTCACTGGCAAGGGGG
GTGCGGAACCCCCATTCAACGCACGGGAGGATGTTCACGAATTCACATCG
GAGAAGAACCGTGCAGTAGACCAAATCATCCCCGGCCCCGGGGCTGCTAT
TACGGCAAGGGACGAGCGGGGTAGCGCCTCTGTTATACGCGAGGGGGGGG
GGGGGGCGTGCGGCTCATGGATGTTACTGCGATGTTGTGCGTTCAGCCAC
GAATGAGTCACTGGCGCAAGCAGGAAGAAGTCGAACGCGACCTGGGGCTC
GAAGAGAAGGCCGTCAGCAAGCAGTTCATGAACTTGGGCGGAGGCACGCA
TGGCAAGAAGAACCACGACGAGGCCGTCAAGAAGCTCGCGGCAGCTGGAG
TCTACCGAGTCTTGGGTAGCAAGTATCCGAGGAGGGTGTGGTGGCTAGCC
TTCACTGGCAAGGGGGGTGCGGAACCCCCATTCAACGCACGGGAGGATGT
TCACGAATTCACATCGGAGAAGAACCGTGCAGTAGACCAAATCATCCCCG
GCCCCGGGGCTGCTATTACGGCAAGGGACGAGCGGGGTAGCGCCTCTGTT
ATACGCGAGGGGGGGGGGGGGGCGTGCGGCTCGGTTGGCTGGGTACGGAG
CGACGCCATGCAGATGATGATGTCTTCTCCAACATACGGAATATTTCTCA
ATTTAGACGAGCTGTCAAGATTCCTTGATGTGCCCAAGCAAGCCCTGAGA
GAGGTACTGCTGCCCACTTCCACATCCGCAAGTGAAGATCACGACATGTT
CCTGAAGACGTTCGGCATCTTCAGGGAACGGCACTTCAACATGCCCTGCT
GGGGCCTGCTCGGGCGCGGACACATATTCGCACTGGGATTTGACGTCTAC
TCGAGTCTCCTGAGCGCTACACACCAGAAAACTTTCTGGGTTGGCTGGGT
ACGGAGCGACGCCATGCAGATGATGATGTCTTCTCCAACATACGGAATAT
TTCTCAATTTAGACGAGCTGTCAAGATTCCTTGATGTGCCCAAGCAAGCC
CTGAGAGAGGTACTGCTGCCCACTTCCACATCCGCAAGTGAAGATCACGA
CATGTTCCTGAAGACGTTCGGCATCTTCAGGGAACGGCACTTCAACATGC
CCTGCTGGGGCCTGCTCGGGCGCGGACACATATTCGCACTGGGATTTGAC
GTCTACTCGAGTCTCCTGAGCGCTACACACCAGAAAACTTTCTGGACCGG
GCAGCAATTCCGGTCAACAGGGCAACCCGAAAACCCGCCGCCTGGATGTC
TGGCAAGCGATTGCTTGGAGATTTGCGAGCTCGCGAAGGATGTTTTCCAC
TCATTGCAGTGCCGGAACTGCGAGCCAAACTGTCCTCGCAAAACCCCCCG
ACACTGTTGGGATTTTATGCGGGTGGAGTCGCCGGAAACGTCTATCGTAC
CGTTGGAGAAACCAGGGGAGCTCGGCGCCAAGTTCGAGTGTGTTCACTGC
GGGTCCATCCATATTGCGGTGCCCTTGCCAGCGAAGGGTTTGGTGCTTGG
CGGCGAAAGGTGGTCGATAGATGACAGGGCTGTACGGTTGGTGTTCGGGT
CAGTTCACGCGTGGACGAAGGACCGGGCAGCAATTCCGGTCAACAGGGCA
ACCCGAAAACCCGCCGCCTGGATGTCTGGCAAGCGATTGCTTGGAGATTT
GCGAGCTCGCGAAGGATGTTTTCCACTCATTGCAGTGCCGGAACTGCGAG
CCAAACTGTCCTCGCAAAACCCCCCGACACTGTTGGGATTTTATGCGGGT
GGAGTCGCCGGAAACGTCTATCGTACCGTTGGAGAAACCAGGGGAGCTCG
GCGCCAAGTTCGAGTGTGTTCACTGCGGGTCCATCCATATTGCGGTGCCC
TTGCCAGCGAAGGGTTTGGTGCTTGGCGGCGAAAGGTGGTCGATAGATGA
CAGGGCTGTACGGTTGGTGTTCGGGTCAGTTCACGCGTGGACGAAG
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