mRNA_M-pyrifera_M_contig113249.2766.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113249.2766.1
Unique NamemRNA_M-pyrifera_M_contig113249.2766.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113249.2766.1 vs. uniprot
Match: A0A7J7PLX7_9CHLO (Mitochondrial inner membrane protease ATP23 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PLX7_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 1.540e-6
Identity = 21/46 (45.65%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   22 HRKCVHRRATLSIQNAPACEKQKPEHVVSAVFRRCYRDTEPFPAAP 159
            H++CV RRA LS+   P C+  K E  V  + + C+RDT+PFP  P
Sbjct:  124 HKRCVRRRALLSVSLNPHCQGGKAEQAVGDMMKHCFRDTDPFPRIP 169
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BLAST of mRNA_M-pyrifera_M_contig113249.2766.1 vs. uniprot
Match: A0A383WKU7_TETOB (Mitochondrial inner membrane protease ATP23 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WKU7_TETOB)

HSP 1 Score: 52.0 bits (123), Expect = 1.850e-6
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   22 HRKCVHRRATLSIQNAPACEKQKPEHVVSAVFRRCYRDTEPFPAAP 159
            H++CV RRA LS+   P C+  K E  VS + + C RDT+PFP  P
Sbjct:  176 HKRCVRRRALLSVSLNPHCQGGKAEQAVSDMMKHCLRDTDPFPRVP 221
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BLAST of mRNA_M-pyrifera_M_contig113249.2766.1 vs. uniprot
Match: A0A0D2MF20_9CHLO (Mitochondrial inner membrane protease ATP23 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MF20_9CHLO)

HSP 1 Score: 50.1 bits (118), Expect = 1.130e-5
Identity = 20/46 (43.48%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:   22 HRKCVHRRATLSIQNAPACEKQKPEHVVSAVFRRCYRDTEPFPAAP 159
            H++CV RRA +S+   P C+  K E  V+ +  RC+RDT+P+P  P
Sbjct:  216 HKRCVRRRALMSVGMNPYCQGVKAEQAVAEMMPRCFRDTDPWPRVP 261
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113249.2766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7J7PLX7_9CHLO1.540e-645.65Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A383WKU7_TETOB1.850e-647.83Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
A0A0D2MF20_9CHLO1.130e-543.48Mitochondrial inner membrane protease ATP23 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113249contigM-pyrifera_M_contig113249:3..167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.5216253-CDS-M-pyrifera_M_contig113249:2..1671622815647.5216253-CDS-M-pyrifera_M_contig113249:2..167Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113249 3..167 +
1692277503.796955-CDS-M-pyrifera_M_contig113249:2..1671692277503.796955-CDS-M-pyrifera_M_contig113249:2..167Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113249 3..167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113249.2766.1prot_M-pyrifera_M_contig113249.2766.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113249 3..167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113249.2766.1

>prot_M-pyrifera_M_contig113249.2766.1 ID=prot_M-pyrifera_M_contig113249.2766.1|Name=mRNA_M-pyrifera_M_contig113249.2766.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
HFGFRKGHRKCVHRRATLSIQNAPACEKQKPEHVVSAVFRRCYRDTEPFP
AAPE*
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mRNA from alignment at M-pyrifera_M_contig113249:3..167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113249.2766.1 ID=mRNA_M-pyrifera_M_contig113249.2766.1|Name=mRNA_M-pyrifera_M_contig113249.2766.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig113249:3..167+ (Macrocystis pyrifera P11B4 male)
CACTTCGGCTTCCGCAAGGGACACCGCAAGTGCGTGCACCGCAGAGCCAC
GCTCTCCATCCAGAACGCACCCGCCTGCGAGAAGCAAAAACCCGAACACG
TCGTCTCCGCTGTCTTCCGAAGGTGCTACAGGGACACGGAGCCGTTCCCC
GCTGCCCCAGAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113249:3..167+

>mRNA_M-pyrifera_M_contig113249.2766.1 ID=mRNA_M-pyrifera_M_contig113249.2766.1|Name=mRNA_M-pyrifera_M_contig113249.2766.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig113249:3..167+ (Macrocystis pyrifera P11B4 male)
CACTTCGGCTTCCGCAAGGGACACCGCAAGTGCGTGCACCGCAGAGCCAC
GCTCTCCATCCAGAACGCACCCGCCTGCGAGAAGCAAAAACCCGAACACG
TCGTCTCCGCTGTCTTCCGAAGGTGCTACAGGGACACGGAGCCGTTCCCC
GCTGCCCCAGAGTGACACTTCGGCTTCCGCAAGGGACACCGCAAGTGCGT
GCACCGCAGAGCCACGCTCTCCATCCAGAACGCACCCGCCTGCGAGAAGC
AAAAACCCGAACACGTCGTCTCCGCTGTCTTCCGAAGGTGCTACAGGGAC
ACGGAGCCGTTCCCCGCTGCCCCAGAGTGA
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