mRNA_M-pyrifera_M_contig113232.2761.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113232.2761.1
Unique NamemRNA_M-pyrifera_M_contig113232.2761.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A517WAC8_9PLAN (Type II secretion system protein G n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517WAC8_9PLAN)

HSP 1 Score: 223 bits (569), Expect = 2.610e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 AGGLWIGASNTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            AGGLWIGASNTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY
Sbjct:  209 AGGLWIGASNTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
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BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A517V6J0_9PLAN (Type II secretion system protein G n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V6J0_9PLAN)

HSP 1 Score: 189 bits (481), Expect = 5.440e-58
Identity = 89/105 (84.76%), Postives = 96/105 (91.43%), Query Frame = 1 
Query:    1 AGGLWIGASNTNN-GHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            AGGLWIGASN++    NYANWPYHTALVRTWQGATATP PSTIYLINGIN +TGTKYEWSL SSHTGGCHF+FGDGR+KFISEN +G+TLVYLA INDKNVLGEY
Sbjct:  209 AGGLWIGASNSSGTAGNYANWPYHTALVRTWQGATATPDPSTIYLINGINNNTGTKYEWSLSSSHTGGCHFVFGDGRVKFISENVNGDTLVYLAAINDKNVLGEY 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A2E2C1M6_9PLAN (Prepilin-type cleavage/methylation domain-containing protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1M6_9PLAN)

HSP 1 Score: 171 bits (433), Expect = 9.330e-51
Identity = 81/105 (77.14%), Postives = 91/105 (86.67%), Query Frame = 1 
Query:    1 AGGLWIGASNTNN-GHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            AGG+WIGASNT     N ANWPYH+A+VRT+QG+   P  STIYLINGIN +TGTKYEW+L SSHTGGCHFLFGDGRI+FISEN +G+TLVYLAGINDKNVLGEY
Sbjct:  209 AGGVWIGASNTTGTSGNIANWPYHSAIVRTYQGSATAPDFSTIYLINGINNTTGTKYEWTLSSSHTGGCHFLFGDGRIQFISENVNGDTLVYLAGINDKNVLGEY 313
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A518A3Q1_9PLAN (Type II secretion system protein G n=8 Tax=Gimesia TaxID=1649453 RepID=A0A518A3Q1_9PLAN)

HSP 1 Score: 164 bits (416), Expect = 3.280e-48
Identity = 74/106 (69.81%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 AGGLWIGAS--NTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            +G +WIG+S  N++   NY +WPYHTALVR WQG++  P PSTIYLINGINQ+ G KY WSL SSHTGGCHFL GDGR+KFISEN DG TL+YLA INDKNV+GE+
Sbjct:  207 SGAIWIGSSPLNSSTAGNYGDWPYHTALVRNWQGSSTAPIPSTIYLINGINQTDGLKYAWSLSSSHTGGCHFLLGDGRVKFISENIDGETLIYLAAINDKNVIGEF 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A6I6AB33_9PLAN (DUF1559 domain-containing protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A6I6AB33_9PLAN)

HSP 1 Score: 164 bits (415), Expect = 5.010e-48
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 1 
Query:    1 AGGLWIGASNTNNGH--NYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            +G LWIGA +  +    N  NWPYHTAL+RTWQGATATPTPSTIYLINGINQ+ G  Y WSL SSH GGCHF+ GDG ++F+SENTDGNTLVYLA INDKNVLGE+
Sbjct:  210 SGALWIGAHSYVHATAGNIGNWPYHTALMRTWQGATATPTPSTIYLINGINQNDGLAYAWSLSSSHEGGCHFVLGDGSVRFVSENTDGNTLVYLAAINDKNVLGEW 315
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A2E2BVR8_9PLAN (Prepilin-type cleavage/methylation domain-containing protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2BVR8_9PLAN)

HSP 1 Score: 164 bits (414), Expect = 6.550e-48
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:    1 AGGLWIGA--SNTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            AG +WIGA  +NT  G NYA+W +HTALVR WQG++  P PSTIYLINGINQ+ G KYEW+L SSHTGGCHFL GDGR++F+SEN DG TL+YLA INDKNV+GE+
Sbjct:  207 AGSIWIGAVPTNTATGGNYADWYWHTALVRNWQGSSTAPIPSTIYLINGINQTNGLKYEWTLSSSHTGGCHFLLGDGRVQFVSENIDGETLIYLASINDKNVIGEF 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A517V6I5_9PLAN (Type II secretion system protein G n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V6I5_9PLAN)

HSP 1 Score: 162 bits (409), Expect = 3.890e-47
Identity = 75/106 (70.75%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 AGGLWIGASNT--NNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            +G +WIGA     ++  N ANWPYHTALVRTWQG TATP PSTIYLINGIN + G +Y WSL SSHTGGCHFL GDG ++FISEN DG+TLVYLA INDKNV+GE+
Sbjct:  209 SGAIWIGAQGYVHSSAGNVANWPYHTALVRTWQGPTATPDPSTIYLINGINNNDGLRYAWSLSSSHTGGCHFLLGDGSVRFISENIDGDTLVYLAAINDKNVIGEF 314
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A517W5N6_9PLAN (Type II secretion system protein G n=3 Tax=Gimesia TaxID=1649453 RepID=A0A517W5N6_9PLAN)

HSP 1 Score: 160 bits (405), Expect = 1.630e-46
Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 1 
Query:    1 AGGLWIGAS----NTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            +GG+W+G S    N + G NY NWP+HTALVRTWQG++ATP PSTIYLINGIN + G +Y WSL SSH GGCHFL GDG ++FISEN DGN LVYLAGINDKNV+GE+
Sbjct:  210 SGGVWMGTSVVTSNASAG-NYGNWPWHTALVRTWQGSSATPDPSTIYLINGINNNDGLRYAWSLSSSHEGGCHFLLGDGGVRFISENIDGNLLVYLAGINDKNVIGEF 316
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A517VAV2_9PLAN (Type II secretion system protein G n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517VAV2_9PLAN)

HSP 1 Score: 156 bits (394), Expect = 6.610e-45
Identity = 69/106 (65.09%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:    1 AGGLWIGAS--NTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            +G +WIG+S  N+    NY +WPYHTALVR WQG++  P PSTIYLINGINQ+ G +Y W+L SSHTGGCHFL GDGR++FISEN +G TL+YL  INDKNV+GE+
Sbjct:  207 SGAIWIGSSPINSATAGNYGDWPYHTALVRNWQGSSTAPIPSTIYLINGINQTDGLRYAWTLSSSHTGGCHFLLGDGRVQFISENINGETLIYLTAINDKNVIGEF 312
[Close]
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Match: A0A517W9R1_9PLAN (Type II secretion system protein G n=6 Tax=Gimesia TaxID=1649453 RepID=A0A517W9R1_9PLAN)

HSP 1 Score: 158 bits (400), Expect = 8.130e-45
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 AGGLWIGAS--NTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQSTGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNVLGEY 312
            +G +WIG+S  N+    NY +WPYHTALVR WQG++  P PSTIYLINGINQ+ G KY WSL SSH GGCHFL GDGR++FISEN D  TL+YLA INDKNV+GE+
Sbjct:  308 SGAIWIGSSPLNSATAGNYGDWPYHTALVRNWQGSSTAPIPSTIYLINGINQTDGLKYAWSLSSSHAGGCHFLLGDGRVRFISENVDAETLIYLAAINDKNVIGEF 413
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113232.2761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517WAC8_9PLAN2.610e-71100.00Type II secretion system protein G n=5 Tax=Gimesia... [more]
A0A517V6J0_9PLAN5.440e-5884.76Type II secretion system protein G n=2 Tax=Gimesia... [more]
A0A2E2C1M6_9PLAN9.330e-5177.14Prepilin-type cleavage/methylation domain-containi... [more]
A0A518A3Q1_9PLAN3.280e-4869.81Type II secretion system protein G n=8 Tax=Gimesia... [more]
A0A6I6AB33_9PLAN5.010e-4872.64DUF1559 domain-containing protein n=2 Tax=Gimesia ... [more]
A0A2E2BVR8_9PLAN6.550e-4869.81Prepilin-type cleavage/methylation domain-containi... [more]
A0A517V6I5_9PLAN3.890e-4770.75Type II secretion system protein G n=2 Tax=Gimesia... [more]
A0A517W5N6_9PLAN1.630e-4669.44Type II secretion system protein G n=3 Tax=Gimesia... [more]
A0A517VAV2_9PLAN6.610e-4565.09Type II secretion system protein G n=2 Tax=Gimesia... [more]
A0A517W9R1_9PLAN8.130e-4566.98Type II secretion system protein G n=6 Tax=Gimesia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113232contigM-pyrifera_M_contig113232:264..578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score118.2
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog344747.PM8797T_07974
Hectar predicted targeting categoryother localisation
EggNOG free text desc.general secretion pathway protein
EggNOG OGsCOG2165@1,COG2165@2
COG Functional cat.NU
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.2968369-CDS-M-pyrifera_M_contig113232:263..5781622815647.2968369-CDS-M-pyrifera_M_contig113232:263..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113232 264..578 -
1692277503.7284462-CDS-M-pyrifera_M_contig113232:263..5781692277503.7284462-CDS-M-pyrifera_M_contig113232:263..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113232 264..578 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113232.2761.1prot_M-pyrifera_M_contig113232.2761.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113232 264..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113232.2761.1

>prot_M-pyrifera_M_contig113232.2761.1 ID=prot_M-pyrifera_M_contig113232.2761.1|Name=mRNA_M-pyrifera_M_contig113232.2761.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
AGGLWIGASNTNNGHNYANWPYHTALVRTWQGATATPTPSTIYLINGINQ
STGTKYEWSLGSSHTGGCHFLFGDGRIKFISENTDGNTLVYLAGINDKNV
LGEY*
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mRNA from alignment at M-pyrifera_M_contig113232:264..578-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113232.2761.1 ID=mRNA_M-pyrifera_M_contig113232.2761.1|Name=mRNA_M-pyrifera_M_contig113232.2761.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=315bp|location=Sequence derived from alignment at M-pyrifera_M_contig113232:264..578- (Macrocystis pyrifera P11B4 male)
GCCGGTGGTCTGTGGATCGGTGCCTCGAACACCAATAATGGGCACAATTA
CGCCAACTGGCCTTACCATACGGCTCTGGTCCGCACCTGGCAGGGGGCGA
CTGCGACTCCGACCCCGTCCACGATCTACCTGATCAACGGAATCAACCAG
TCGACCGGAACCAAGTATGAATGGTCGCTGGGCAGTTCGCATACTGGCGG
CTGTCATTTTCTGTTCGGTGACGGACGGATCAAATTTATCAGCGAGAATA
CCGATGGGAACACCCTGGTCTACCTGGCTGGTATCAACGATAAGAACGTG
CTTGGAGAATACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113232:264..578-

>mRNA_M-pyrifera_M_contig113232.2761.1 ID=mRNA_M-pyrifera_M_contig113232.2761.1|Name=mRNA_M-pyrifera_M_contig113232.2761.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig113232:264..578- (Macrocystis pyrifera P11B4 male)
GCCGGTGGTCTGTGGATCGGTGCCTCGAACACCAATAATGGGCACAATTA
CGCCAACTGGCCTTACCATACGGCTCTGGTCCGCACCTGGCAGGGGGCGA
CTGCGACTCCGACCCCGTCCACGATCTACCTGATCAACGGAATCAACCAG
TCGACCGGAACCAAGTATGAATGGTCGCTGGGCAGTTCGCATACTGGCGG
CTGTCATTTTCTGTTCGGTGACGGACGGATCAAATTTATCAGCGAGAATA
CCGATGGGAACACCCTGGTCTACCTGGCTGGTATCAACGATAAGAACGTG
CTTGGAGAATACTAAGCCGGTGGTCTGTGGATCGGTGCCTCGAACACCAA
TAATGGGCACAATTACGCCAACTGGCCTTACCATACGGCTCTGGTCCGCA
CCTGGCAGGGGGCGACTGCGACTCCGACCCCGTCCACGATCTACCTGATC
AACGGAATCAACCAGTCGACCGGAACCAAGTATGAATGGTCGCTGGGCAG
TTCGCATACTGGCGGCTGTCATTTTCTGTTCGGTGACGGACGGATCAAAT
TTATCAGCGAGAATACCGATGGGAACACCCTGGTCTACCTGGCTGGTATC
AACGATAAGAACGTGCTTGGAGAATACTAA
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