prot_M-pyrifera_M_contig113195.2749.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig113195.2749.1
Unique Nameprot_M-pyrifera_M_contig113195.2749.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length100
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113195.2749.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 17..85
e-value: 3.6E-6
score: 28.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113195contigM-pyrifera_M_contig113195:280..579 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113195.2749.1mRNA_M-pyrifera_M_contig113195.2749.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig113195 280..579 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig113195.2749.1 ID=prot_M-pyrifera_M_contig113195.2749.1|Name=mRNA_M-pyrifera_M_contig113195.2749.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
GGAGVPNRAARLVSGPASTVKVAIAGGASNVEAIVKTTSLPEPMVRMIVA
ELERVGELVVDSIGFGCPDGACGSCSSGSSCDHCSPDGDGNPVPVELGPR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf