mRNA_M-pyrifera_M_contig11316.2743.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11316.2743.1
Unique NamemRNA_M-pyrifera_M_contig11316.2743.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11316.2743.1 vs. uniprot
Match: D8LMU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU4_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 2.820e-67
Identity = 173/362 (47.79%), Postives = 208/362 (57.46%), Query Frame = 1 
Query:    1 QYQEAFMHYLVAAEQGSPEGQASLAWLLDQGLLAEARDTS-PGRVLQTXXXXXXXXXXXXXXXXXXXXXXXXXXEPSELGEVGAE--ASPSVGVGDEGDEGIG-----------------GGVFDVVDVVRAMGGNPEAMARTYRRMAAEQGDADARCEIADHLYRLAKAKGVVPPGTGWLP-WAK---------------------------GYAAATEPRGAEETAENLETPGGFGPGT-----GTGYGRESEASRVAREGDGARLLSDAVGYYRLA---GEAEGG-----GSRRGLFAMGWLHQHGVGVKADPAVARQYYRRSGSAPAVVGLWIMGASDVFTEVALPFALSIAVVGITM 903
            QYQEAF+HYL+AAEQG+ EGQASLAWLLD+ + A A  TS P  +++          XXXXXXXXXXXXX       ++G  G +     + G  DEG  G                    GV  V D VR MGG+PEAMAR YRR+AAEQGD++ARC+IADHLYR AK  G V PGTGWLP WA+                                            L+  G  G G         YGRESE  R+ARE D A+LLSDAV YYRLA   G  EGG      S+RGLF++GW+HQHGVGV+ADPA+AR+ YRRSGSAPA++GLW+MGASD+  E+  P A+S+ VV  TM
Sbjct:  716 QYQEAFVHYLIAAEQGNKEGQASLAWLLDRSMAAAAPGTSWPSSLVRRAWDSLVGDGXXXXXXXXXXXXX-------DIGPSGGDERVEDASGWPDEGGSGXXXXXXXXXXMRRGRRRRRSGVGGVADAVRQMGGDPEAMARRYRRLAAEQGDSEARCDIADHLYRQAKDMGAVAPGTGWLPAWARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKPIGQGGIGATXXXXXXXYGRESEDERLARESDAAQLLSDAVAYYRLAAEGGRGEGGLGGSSPSQRGLFSLGWMHQHGVGVEADPALARELYRRSGSAPALLGLWMMGASDLALEIGAPLAVSVVVVAATM 1070
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BLAST of mRNA_M-pyrifera_M_contig11316.2743.1 vs. uniprot
Match: A0A6H5JW92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW92_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.710e-38
Identity = 88/184 (47.83%), Postives = 107/184 (58.15%), Query Frame = 1 
Query:  454 GVVPPGTGWLP-WAKGYAAATEPRGAEETAENLETP--------------------GGFGP---GTGTGYGRESEASRVAREGDGARLLSDAVGYYRLAGEAEGGG--------SRRGLFAMGWLHQHGVGVKADPAVARQYYRRSGSAPAVVGLWIMGASDVFTEVALPFALSIAVVGITMMA 909
            G V PGTGWLP WA+                                         GG G    G+G GYGRESE  R+ARE D A+LLSDAV YY+LA E  GG         S+RGLF++GW+HQHGVGV+ADPA+AR+ YRRSGSAPA++GLW+MGASD+  E+  P A+S  VV  TM+A
Sbjct:    2 GAVAPGTGWLPAWARTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKPIGKGGIGATTGGSGGGYGRESEDERLARESDAAQLLSDAVAYYKLAAEGGGGEGGLGGSSPSQRGLFSLGWMHQHGVGVEADPALARELYRRSGSAPALLGLWMMGASDLALEIGAPLAVSAVVVAATMLA 185
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BLAST of mRNA_M-pyrifera_M_contig11316.2743.1 vs. uniprot
Match: A0A6H5KY48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY48_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.090e-12
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  739 HGVGVKADPAVARQYYRRSGSAPAVVGLWIMGASDVFTEVALPFALSIAVVGITMMA 909
            HGVGV+ADPA+AR+ YRRSGS PA++GLW+MGASD+  E+  P A+S   V  TM+A
Sbjct:    9 HGVGVEADPALARELYRRSGSTPALLGLWMMGASDLALEIGAPRAVSAVRVAATMLA 65
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11316.2743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LMU4_ECTSI2.820e-6747.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JW92_9PHAE1.710e-3847.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY48_9PHAE3.090e-1261.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11316contigM-pyrifera_M_contig11316:268..2636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1131
Cds size1113
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11316.2743.1prot_M-pyrifera_M_contig11316.2743.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11316 286..2636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.3618722-UTR-M-pyrifera_M_contig11316:267..2851622815646.3618722-UTR-M-pyrifera_M_contig11316:267..285Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11316 268..285 +
1692277503.3814986-UTR-M-pyrifera_M_contig11316:267..2851692277503.3814986-UTR-M-pyrifera_M_contig11316:267..285Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11316 268..285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.372128-CDS-M-pyrifera_M_contig11316:285..6771622815646.372128-CDS-M-pyrifera_M_contig11316:285..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11316 286..677 +
1692277503.3940704-CDS-M-pyrifera_M_contig11316:285..6771692277503.3940704-CDS-M-pyrifera_M_contig11316:285..677Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11316 286..677 +
1622815646.3814592-CDS-M-pyrifera_M_contig11316:1241..15691622815646.3814592-CDS-M-pyrifera_M_contig11316:1241..1569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11316 1242..1569 +
1692277503.401527-CDS-M-pyrifera_M_contig11316:1241..15691692277503.401527-CDS-M-pyrifera_M_contig11316:1241..1569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11316 1242..1569 +
1622815646.3907518-CDS-M-pyrifera_M_contig11316:2243..26361622815646.3907518-CDS-M-pyrifera_M_contig11316:2243..2636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11316 2244..2636 +
1692277503.408813-CDS-M-pyrifera_M_contig11316:2243..26361692277503.408813-CDS-M-pyrifera_M_contig11316:2243..2636Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11316 2244..2636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11316.2743.1

>prot_M-pyrifera_M_contig11316.2743.1 ID=prot_M-pyrifera_M_contig11316.2743.1|Name=mRNA_M-pyrifera_M_contig11316.2743.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=371bp
MHYLVAAEQGSPEGQASLAWLLDQGLLAEARDTSPGRVLQTTTTTTSSSS
SSSGSSNGGGSSSGGGGEPSELGEVGAEASPSVGVGDEGDEGIGGGVFDV
VDVVRAMGGNPEAMARTYRRMAAEQGDADARCEIADHLYRLAKAKGVVPP
GTGWLPWAKGYAAATEPRGAEETAENLETPGGFGPGTGTGYGRESEASRV
AREGDGARLLSDAVGYYRLAGEAEGGGSRRGLFAMGWLHQHGVGVKADPA
VARQYYRRSGSAPAVVGLWIMGASDVFTEVALPFALSIAVVGITMMAMKM
SRRGRSRGRRHRHRQQPDGPGGNSSRVGGGVRVDGGVGVGGSGGVGEGGG
GGFGGGSVSVGVDGAGSGSEE
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mRNA from alignment at M-pyrifera_M_contig11316:268..2636+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11316.2743.1 ID=mRNA_M-pyrifera_M_contig11316.2743.1|Name=mRNA_M-pyrifera_M_contig11316.2743.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2369bp|location=Sequence derived from alignment at M-pyrifera_M_contig11316:268..2636+ (Macrocystis pyrifera P11B4 male)
CAGTACCAAGAGGCGTTTATGCATTACCTCGTCGCAGCGGAGCAGGGGAG
CCCGGAAGGCCAAGCGTCGCTCGCCTGGCTCCTGGACCAAGGCTTACTCG
CCGAGGCCAGGGATACGTCGCCCGGCCGCGTGCTCCAGACCACCACCACC
ACCACCAGCAGCAGCAGCAGCAGCAGCGGCAGCAGCAACGGCGGCGGCAG
TAGTAGCGGCGGCGGCGGTGAACCTAGTGAACTGGGGGAGGTGGGGGCGG
AGGCGTCGCCGTCCGTGGGGGTTGGGGACGAAGGCGATGAGGGTATCGGT
GGCGGTGTGTTTGACGTAGTTGACGTCGTGAGGGCAATGGGTGGAAACCC
CGAAGCGATGGCGCGCACCTACCGGAGGATGGCGGCCGAGCAGGGAGACG
CGGACGCGAGGTGAGCAAAGCGAGGCGGGGAGTGTTCACGCTGGTTGGTG
GCTGGGACGACGGGAGGGCAGGATGATTTATTTTCTTGTTATCGAAGTTT
TTAGTTTGTTGTCGTTGTTTGTTACGGTGGTTGGAGCCTAATCTCGTATT
GCACTATCAAAGCCCCTTCACCGCGTGCAATTGTTCCGGCGGCGCGGGCA
ACGAACGACAGCAGTCGTCTCGGGTTTGCACAGGCCCCCGTAAGTCCTCA
GCCCACACCCTGCACGTGCTGTGTATAAGAGGAAACTCCCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCTCCAAATCCACCAACCAAGCGGTTCTTAGTAG
GATGCTGCTCACCCTTTGTGTGTGTTTTACCGAGCACGTCACGGCGCTTC
GCACTTGGTGCCAGCAGTGTCTGCCTGGTCGGTGCAAACCCGACGTGCTC
CGTCACGGCATTGTAGGGATGCGAGATCCTATGGCCGAACGACTACGGCT
ATGCATGACATGAATACACCCCCCCCCACCTTTACCCTTCCTCCCTTCCT
CCCTTCCTCCCTCCGCAAAACAAGGTGTGAGATAGCGGACCACCTGTACC
GGCTGGCGAAGGCAAAAGGCGTCGTTCCCCCCGGCACCGGCTGGCTGCCG
TGGGCCAAGGGATACGCGGCGGCGACAGAACCGAGGGGGGCGGAGGAAAC
CGCGGAAAATTTGGAAACCCCCGGTGGCTTCGGGCCTGGCACGGGGACGG
GGTACGGCAGGGAGAGCGAAGCCTCCCGCGTTGCGAGAGAGGGCGACGGG
GCGAGGCTTTTGTCGGACGCTGTCGGGTATTATAGGCTGGCGGGCGAGGC
GGAGGGGGGAGGGAGCCGGCGGGGCCTCTTTGCCATGGGTTGGCTGCATC
AGGTGGGAGTAGTGAAGAAGTGAAGGGGGTTTTGGGCGCACGCGGTGTTA
TTGGGTTGGTGACGATCGTGGGAGGGGGGGGGGGGGGGGAGGGGGTCTTG
GGGGGGGGGGGGGGGGGGTTTTTTTTTTCCGGTGATGTTTCACTGCCAAT
GGTTTTTATTTTTTTCCCTTCTGTTTTTGCTTTCGCTACTGTATTCGTCG
CTGTTACTATTGATGTTGTTGTTGCTATGGTTTCTGTTGTCTGTTGTCTA
GATTGATGGCAAAGACAAGCTCCTGTACATTGCACCAAAAGCGCGACGGA
GCTGCCAAACCCCCACACGACAGGTACCACGCAACACAGCAGCAGATGGA
AAAACATTTCTGAACGCAGACGCTGAATACTCAGTGCCCCTCCTCCCTCC
CCCTCCTGCGCCCTATTACGCACCAAAAATCGACCCCCCCCCCCCCCCCC
CCCAACACCCCCCCAAAAAAAAAAAAAACAGGCAAAAAAAACCCTCTGTT
CTTTTNNNNNNNNNNCCTTCCCCACCCCTGCTCCTCAACTCCCGCCCCCC
CCCCCCCCCCCCCCCCCCCCCACCCCTATCCCCCAAACCCCCCCCCCCCC
CCCCCCCCCCCCCGAAACACCACACAAAACATATGAAAACGCGCAAAAAC
ATGCCCTTTGTCGTTTGCTTTGGCAGCACGGCGTGGGTGTGAAGGCCGAC
CCCGCTGTAGCCCGCCAGTACTACCGCCGCTCCGGCTCCGCCCCGGCAGT
GGTGGGCCTCTGGATCATGGGAGCGTCAGATGTGTTCACCGAGGTCGCCC
TCCCTTTCGCGCTGTCGATTGCGGTGGTCGGCATCACGATGATGGCGATG
AAAATGTCGAGGAGAGGACGCAGTCGTGGTCGTCGCCACCGCCACCGCCA
ACAGCCGGATGGACCCGGCGGGAATTCTAGTAGGGTCGGTGGCGGTGTTC
GTGTTGATGGTGGTGTTGGTGTTGGTGGGAGTGGGGGGGTGGGGGAGGGT
GGCGGTGGTGGCTTCGGCGGTGGCAGTGTCAGCGTCGGTGTCGACGGTGC
CGGCAGCGGTAGCGAAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11316:268..2636+

>mRNA_M-pyrifera_M_contig11316.2743.1 ID=mRNA_M-pyrifera_M_contig11316.2743.1|Name=mRNA_M-pyrifera_M_contig11316.2743.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2226bp|location=Sequence derived from alignment at M-pyrifera_M_contig11316:268..2636+ (Macrocystis pyrifera P11B4 male)
ATGCATTACCTCGTCGCAGCGGAGCAGGGGAGCCCGGAAGGCCAAGCGTC
GCTCGCCTGGCTCCTGGACCAAGGCTTACTCGCCGAGGCCAGGGATACGT
CGCCCGGCCGCGTGCTCCAGACCACCACCACCACCACCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGCAACGGCGGCGGCAGTAGTAGCGGCGGCGGCGG
TGAACCTAGTGAACTGGGGGAGGTGGGGGCGGAGGCGTCGCCGTCCGTGG
GGGTTGGGGACGAAGGCGATGAGGGTATCGGTGGCGGTGTGTTTGACGTA
GTTGACGTCGTGAGGGCAATGGGTGGAAACCCCGAAGCGATGGCGCGCAC
CTACCGGAGGATGGCGGCCGAGCAGGGAGACGCGGACGCGAGATGCATTA
CCTCGTCGCAGCGGAGCAGGGGAGCCCGGAAGGCCAAGCGTCGCTCGCCT
GGCTCCTGGACCAAGGCTTACTCGCCGAGGCCAGGGATACGTCGCCCGGC
CGCGTGCTCCAGACCACCACCACCACCACCAGCAGCAGCAGCAGCAGCAG
CGGCAGCAGCAACGGCGGCGGCAGTAGTAGCGGCGGCGGCGGTGAACCTA
GTGAACTGGGGGAGGTGGGGGCGGAGGCGTCGCCGTCCGTGGGGGTTGGG
GACGAAGGCGATGAGGGTATCGGTGGCGGTGTGTTTGACGTAGTTGACGT
CGTGAGGGCAATGGGTGGAAACCCCGAAGCGATGGCGCGCACCTACCGGA
GGATGGCGGCCGAGCAGGGAGACGCGGACGCGAGGTGTGAGATAGCGGAC
CACCTGTACCGGCTGGCGAAGGCAAAAGGCGTCGTTCCCCCCGGCACCGG
CTGGCTGCCGTGGGCCAAGGGATACGCGGCGGCGACAGAACCGAGGGGGG
CGGAGGAAACCGCGGAAAATTTGGAAACCCCCGGTGGCTTCGGGCCTGGC
ACGGGGACGGGGTACGGCAGGGAGAGCGAAGCCTCCCGCGTTGCGAGAGA
GGGCGACGGGGCGAGGCTTTTGTCGGACGCTGTCGGGTATTATAGGCTGG
CGGGCGAGGCGGAGGGGGGAGGGAGCCGGCGGGGCCTCTTTGCCATGGGT
TGGCTGCATCAGGTGTGAGATAGCGGACCACCTGTACCGGCTGGCGAAGG
CAAAAGGCGTCGTTCCCCCCGGCACCGGCTGGCTGCCGTGGGCCAAGGGA
TACGCGGCGGCGACAGAACCGAGGGGGGCGGAGGAAACCGCGGAAAATTT
GGAAACCCCCGGTGGCTTCGGGCCTGGCACGGGGACGGGGTACGGCAGGG
AGAGCGAAGCCTCCCGCGTTGCGAGAGAGGGCGACGGGGCGAGGCTTTTG
TCGGACGCTGTCGGGTATTATAGGCTGGCGGGCGAGGCGGAGGGGGGAGG
GAGCCGGCGGGGCCTCTTTGCCATGGGTTGGCTGCATCAGCACGGCGTGG
GTGTGAAGGCCGACCCCGCTGTAGCCCGCCAGTACTACCGCCGCTCCGGC
TCCGCCCCGGCAGTGGTGGGCCTCTGGATCATGGGAGCGTCAGATGTGTT
CACCGAGGTCGCCCTCCCTTTCGCGCTGTCGATTGCGGTGGTCGGCATCA
CGATGATGGCGATGAAAATGTCGAGGAGAGGACGCAGTCGTGGTCGTCGC
CACCGCCACCGCCAACAGCCGGATGGACCCGGCGGGAATTCTAGTAGGGT
CGGTGGCGGTGTTCGTGTTGATGGTGGTGTTGGTGTTGGTGGGAGTGGGG
GGGTGGGGGAGGGTGGCGGTGGTGGCTTCGGCGGTGGCAGTGTCAGCGTC
GGTGTCGACGGTGCCGGCAGCGGTAGCGAAGAGCACGGCGTGGGTGTGAA
GGCCGACCCCGCTGTAGCCCGCCAGTACTACCGCCGCTCCGGCTCCGCCC
CGGCAGTGGTGGGCCTCTGGATCATGGGAGCGTCAGATGTGTTCACCGAG
GTCGCCCTCCCTTTCGCGCTGTCGATTGCGGTGGTCGGCATCACGATGAT
GGCGATGAAAATGTCGAGGAGAGGACGCAGTCGTGGTCGTCGCCACCGCC
ACCGCCAACAGCCGGATGGACCCGGCGGGAATTCTAGTAGGGTCGGTGGC
GGTGTTCGTGTTGATGGTGGTGTTGGTGTTGGTGGGAGTGGGGGGGTGGG
GGAGGGTGGCGGTGGTGGCTTCGGCGGTGGCAGTGTCAGCGTCGGTGTCG
ACGGTGCCGGCAGCGGTAGCGAAGAG
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