mRNA_M-pyrifera_M_contig113130.2742.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113130.2742.1
Unique NamemRNA_M-pyrifera_M_contig113130.2742.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A7X6AS89_9ACTN (50S ribosomal protein L9 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AS89_9ACTN)

HSP 1 Score: 145 bits (365), Expect = 1.230e-42
Identity = 73/96 (76.04%), Postives = 87/96 (90.62%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
            RA ++RNAA+RAEAEEVA++LV  VITIAAKAGEGGRLFGSVG A+I  AVEAQTG V+DRR+L LEHPLKDLGQ+ V+C+LHPEVEFP+TV+V+E
Sbjct:   52 RATAMRNAANRAEAEEVASRLVSEVITIAAKAGEGGRLFGSVGAADISAAVEAQTGAVIDRRTLQLEHPLKDLGQASVICRLHPEVEFPVTVEVIE 147          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A3M2GVZ8_ACTSX (50S ribosomal protein L9 n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GVZ8_ACTSX)

HSP 1 Score: 124 bits (310), Expect = 2.820e-34
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1
Query:   16 RNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
            RNAA RA+AEEVAT+LVP VITI A AGEGGRLFGSV  A+IVEAV  Q GV +DRR+L L+ PLK+ G+ +VMC+LH EVEFPITV+VV
Sbjct:   57 RNAADRAQAEEVATRLVPQVITIGAHAGEGGRLFGSVTSADIVEAVAEQAGVTLDRRTLRLDGPLKETGRHVVMCRLHAEVEFPITVEVV 146          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A6B1ATW2_9ACTN (50S ribosomal protein L9 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1ATW2_9ACTN)

HSP 1 Score: 123 bits (308), Expect = 5.670e-34
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
            RAA +R+A SRAEAEE+A +LVP VIT+ A+AGEGGRLFGSV   +IV+AVEAQ GVV+DR +L L+ PLK+LGQ  V CKL  EVEFP+TV+V+E
Sbjct:   52 RAAVLRDAKSRAEAEEIAARLVPMVITVRARAGEGGRLFGSVSTFDIVDAVEAQAGVVIDRHALALDAPLKELGQVSVNCKLQDEVEFPVTVEVIE 147          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A2D6U6W9_9ACTN (50S ribosomal protein L9 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U6W9_9ACTN)

HSP 1 Score: 121 bits (304), Expect = 7.950e-34
Identity = 61/96 (63.54%), Postives = 81/96 (84.38%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
            RAAS+++AA+RA+AEEVATKLVP   TIAAKAG+GGRLFGSV  A+I   VE++ GV ++ R+L+L+ P+KDLG+ +VMCKLH EV FP+TV+V+E
Sbjct:   16 RAASLKDAATRADAEEVATKLVPMRFTIAAKAGDGGRLFGSVSAADIAAVVESEAGVELEARTLDLDAPIKDLGEHVVMCKLHAEVAFPVTVEVIE 111          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A2E0T0F0_9ACTN (50S ribosomal protein L9 n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T0F0_9ACTN)

HSP 1 Score: 114 bits (286), Expect = 1.270e-30
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
            RAAS ++AA+RA+AEEVATKLVP   T AAKAG+GGR FGSV  A+I   VE++ GV ++ R+L+L+ P+KDLG+ +VMCKLH EV FP+TV+V E
Sbjct:   53 RAASXKDAATRADAEEVATKLVPMRFTXAAKAGDGGRXFGSVSAADIXAVVESEXGVELEXRTLDLDAPIKDLGEHVVMCKLHAEVAFPVTVEVXE 148          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A520XPA5_9ACTN (50S ribosomal protein L9 n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XPA5_9ACTN)

HSP 1 Score: 111 bits (277), Expect = 2.940e-29
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDV 282
            RA++ +NA SRA+A++VA+ LVP VI I AK  + G LFGSVG A+IV AVE QTGVV+DR++L L+H +K++G  MVM ++HPEVEFPI+V++
Sbjct:   52 RASAAKNAESRADADQVASMLVPQVINITAKVHDEGLLFGSVGAADIVAAVEEQTGVVIDRKALRLDHAIKEVGTHMVMTRIHPEVEFPISVEI 145          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: UPI001C62C68C (50S ribosomal protein L9 n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62C68C)

HSP 1 Score: 107 bits (267), Expect = 9.380e-28
Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 1
Query:   13 VRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVEA 291
            +++A+ RA AEEVA  LVP+ +T+ AKAG  GRLFGSVG AE+ EA+E QTG+V+DRR L L+ P+K+ G+  +  +LHP V+FP+ ++VV A
Sbjct:   56 IKDASDRASAEEVAKVLVPTTVTVTAKAGTEGRLFGSVGTAEVAEAIEEQTGIVIDRRRLILDEPIKETGEHQLTARLHPAVQFPVRIEVVGA 148          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A5Q2RSI2_9ACTN (50S ribosomal protein L9 n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RSI2_9ACTN)

HSP 1 Score: 106 bits (265), Expect = 1.890e-27
Identity = 54/95 (56.84%), Postives = 75/95 (78.95%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
            R+  V++AA+RA A+E+A+ LVP+VITI+AKAG  G+LFGSV  A++ EAV++QTG+ +DRR ++L+ P+K  G   V  KLH EVEFPITV+VV
Sbjct:   52 RSRDVKDAAARAAAQEIASTLVPTVITISAKAGGEGKLFGSVTTADVAEAVQSQTGIEIDRRQIHLDEPIKTTGTHTVPAKLHSEVEFPITVEVV 146          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: UPI001AA09A13 (50S ribosomal protein L9 n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA09A13)

HSP 1 Score: 103 bits (258), Expect = 2.170e-26
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
            R+  +++AA R  AEEVA  LVP+VIT+AAKAG  GRLFGSV  A++VEAV +QTG+ +DR+ L+L+ P+K LG   V  KLH +VEF ITVDV+
Sbjct:   52 RSRDLKDAADRGAAEEVAKVLVPAVITVAAKAGTEGRLFGSVTTADVVEAVASQTGIRLDRKLLHLDEPIKTLGTHSVQAKLHSDVEFAITVDVI 146          
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A6G0A7T6_9ACTN (50S ribosomal protein L9 n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A7T6_9ACTN)

HSP 1 Score: 101 bits (251), Expect = 2.480e-25
Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
            RA   + A  R  AEE+AT+LV +V+TI AKAGEGGRLFGSV  ++I  AV  QTG+ +DRR + LE P+K++G   V  +LH EVEFPITV+VV
Sbjct:   52 RARDQKEARDRGAAEEIATQLVSAVVTIDAKAGEGGRLFGSVTTSDISAAVLDQTGIEIDRRMIALEEPIKNVGSHQVAARLHAEVEFPITVEVV 146          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6AS89_9ACTN1.230e-4276.0450S ribosomal protein L9 n=1 Tax=Actinomycetia bac... [more]
A0A3M2GVZ8_ACTSX2.820e-3471.1150S ribosomal protein L9 n=1 Tax=Actinomyces sp. T... [more]
A0A6B1ATW2_9ACTN5.670e-3466.6750S ribosomal protein L9 n=1 Tax=Acidimicrobiaceae... [more]
A0A2D6U6W9_9ACTN7.950e-3463.5450S ribosomal protein L9 n=1 Tax=Acidimicrobiaceae... [more]
A0A2E0T0F0_9ACTN1.270e-3061.4650S ribosomal protein L9 n=6 Tax=Acidimicrobiaceae... [more]
A0A520XPA5_9ACTN2.940e-2958.5150S ribosomal protein L9 n=1 Tax=Acidimicrobiales ... [more]
UPI001C62C68C9.380e-2853.7650S ribosomal protein L9 n=1 Tax=Iamia sp. SCSIO 6... [more]
A0A5Q2RSI2_9ACTN1.890e-2756.8450S ribosomal protein L9 n=1 Tax=Actinomarinicola ... [more]
UPI001AA09A132.170e-2657.8950S ribosomal protein L9 n=1 Tax=Rhabdothermincola... [more]
A0A6G0A7T6_9ACTN2.480e-2556.8450S ribosomal protein L9 n=2 Tax=Bacteria TaxID=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113130contigM-pyrifera_M_contig113130:286..579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog1229780.BN381_100140
Preferred namerplI
KEGG koko:K02939
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0019843,GO:0022625,GO:0022626,GO:0030312,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070180,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.binds to the 23S rRNA
EggNOG OGs2IKX7@201174,3UWRZ@52018,COG0359@1,COG0359@2
COG Functional cat.J
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815646.3278368-CDS-M-pyrifera_M_contig113130:285..5791622815646.3278368-CDS-M-pyrifera_M_contig113130:285..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113130 286..579 -
1692277503.3694746-CDS-M-pyrifera_M_contig113130:285..5791692277503.3694746-CDS-M-pyrifera_M_contig113130:285..579Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113130 286..579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113130.2742.1prot_M-pyrifera_M_contig113130.2742.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113130 286..579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113130.2742.1

>prot_M-pyrifera_M_contig113130.2742.1 ID=prot_M-pyrifera_M_contig113130.2742.1|Name=mRNA_M-pyrifera_M_contig113130.2742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEA
VEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVEA*
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mRNA from alignment at M-pyrifera_M_contig113130:286..579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113130.2742.1 ID=mRNA_M-pyrifera_M_contig113130.2742.1|Name=mRNA_M-pyrifera_M_contig113130.2742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig113130:286..579- (Macrocystis pyrifera P11B4 male)
CGTGCGGCCTCCGTGCGCAACGCCGCGAGCCGGGCCGAGGCCGAAGAGGT CGCCACCAAGCTCGTCCCGAGCGTGATCACCATCGCGGCCAAGGCCGGCG AGGGTGGTCGACTGTTCGGTTCGGTCGGTGAGGCCGAGATCGTCGAGGCG GTCGAGGCCCAGACGGGTGTCGTCGTCGATCGACGCTCTCTCAACCTCGA GCACCCCCTGAAGGACCTCGGTCAGTCGATGGTGATGTGCAAGCTCCACC CCGAGGTGGAGTTTCCGATCACCGTCGACGTCGTCGAGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113130:286..579-

>mRNA_M-pyrifera_M_contig113130.2742.1 ID=mRNA_M-pyrifera_M_contig113130.2742.1|Name=mRNA_M-pyrifera_M_contig113130.2742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig113130:286..579- (Macrocystis pyrifera P11B4 male)
CGTGCGGCCTCCGTGCGCAACGCCGCGAGCCGGGCCGAGGCCGAAGAGGT
CGCCACCAAGCTCGTCCCGAGCGTGATCACCATCGCGGCCAAGGCCGGCG
AGGGTGGTCGACTGTTCGGTTCGGTCGGTGAGGCCGAGATCGTCGAGGCG
GTCGAGGCCCAGACGGGTGTCGTCGTCGATCGACGCTCTCTCAACCTCGA
GCACCCCCTGAAGGACCTCGGTCAGTCGATGGTGATGTGCAAGCTCCACC
CCGAGGTGGAGTTTCCGATCACCGTCGACGTCGTCGAGGCCTGACGTGCG
GCCTCCGTGCGCAACGCCGCGAGCCGGGCCGAGGCCGAAGAGGTCGCCAC
CAAGCTCGTCCCGAGCGTGATCACCATCGCGGCCAAGGCCGGCGAGGGTG
GTCGACTGTTCGGTTCGGTCGGTGAGGCCGAGATCGTCGAGGCGGTCGAG
GCCCAGACGGGTGTCGTCGTCGATCGACGCTCTCTCAACCTCGAGCACCC
CCTGAAGGACCTCGGTCAGTCGATGGTGATGTGCAAGCTCCACCCCGAGG
TGGAGTTTCCGATCACCGTCGACGTCGTCGAGGCCTGA
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