mRNA_M-pyrifera_M_contig113130.2742.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A7X6AS89_9ACTN (50S ribosomal protein L9 n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6AS89_9ACTN) HSP 1 Score: 145 bits (365), Expect = 1.230e-42 Identity = 73/96 (76.04%), Postives = 87/96 (90.62%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
RA ++RNAA+RAEAEEVA++LV VITIAAKAGEGGRLFGSVG A+I AVEAQTG V+DRR+L LEHPLKDLGQ+ V+C+LHPEVEFP+TV+V+E
Sbjct: 52 RATAMRNAANRAEAEEVASRLVSEVITIAAKAGEGGRLFGSVGAADISAAVEAQTGAVIDRRTLQLEHPLKDLGQASVICRLHPEVEFPVTVEVIE 147
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A3M2GVZ8_ACTSX (50S ribosomal protein L9 n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GVZ8_ACTSX) HSP 1 Score: 124 bits (310), Expect = 2.820e-34 Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 1
Query: 16 RNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
RNAA RA+AEEVAT+LVP VITI A AGEGGRLFGSV A+IVEAV Q GV +DRR+L L+ PLK+ G+ +VMC+LH EVEFPITV+VV
Sbjct: 57 RNAADRAQAEEVATRLVPQVITIGAHAGEGGRLFGSVTSADIVEAVAEQAGVTLDRRTLRLDGPLKETGRHVVMCRLHAEVEFPITVEVV 146
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A6B1ATW2_9ACTN (50S ribosomal protein L9 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1ATW2_9ACTN) HSP 1 Score: 123 bits (308), Expect = 5.670e-34 Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
RAA +R+A SRAEAEE+A +LVP VIT+ A+AGEGGRLFGSV +IV+AVEAQ GVV+DR +L L+ PLK+LGQ V CKL EVEFP+TV+V+E
Sbjct: 52 RAAVLRDAKSRAEAEEIAARLVPMVITVRARAGEGGRLFGSVSTFDIVDAVEAQAGVVIDRHALALDAPLKELGQVSVNCKLQDEVEFPVTVEVIE 147
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A2D6U6W9_9ACTN (50S ribosomal protein L9 n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U6W9_9ACTN) HSP 1 Score: 121 bits (304), Expect = 7.950e-34 Identity = 61/96 (63.54%), Postives = 81/96 (84.38%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
RAAS+++AA+RA+AEEVATKLVP TIAAKAG+GGRLFGSV A+I VE++ GV ++ R+L+L+ P+KDLG+ +VMCKLH EV FP+TV+V+E
Sbjct: 16 RAASLKDAATRADAEEVATKLVPMRFTIAAKAGDGGRLFGSVSAADIAAVVESEAGVELEARTLDLDAPIKDLGEHVVMCKLHAEVAFPVTVEVIE 111
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A2E0T0F0_9ACTN (50S ribosomal protein L9 n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0T0F0_9ACTN) HSP 1 Score: 114 bits (286), Expect = 1.270e-30 Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVE 288
RAAS ++AA+RA+AEEVATKLVP T AAKAG+GGR FGSV A+I VE++ GV ++ R+L+L+ P+KDLG+ +VMCKLH EV FP+TV+V E
Sbjct: 53 RAASXKDAATRADAEEVATKLVPMRFTXAAKAGDGGRXFGSVSAADIXAVVESEXGVELEXRTLDLDAPIKDLGEHVVMCKLHAEVAFPVTVEVXE 148
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A520XPA5_9ACTN (50S ribosomal protein L9 n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XPA5_9ACTN) HSP 1 Score: 111 bits (277), Expect = 2.940e-29 Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDV 282
RA++ +NA SRA+A++VA+ LVP VI I AK + G LFGSVG A+IV AVE QTGVV+DR++L L+H +K++G MVM ++HPEVEFPI+V++
Sbjct: 52 RASAAKNAESRADADQVASMLVPQVINITAKVHDEGLLFGSVGAADIVAAVEEQTGVVIDRKALRLDHAIKEVGTHMVMTRIHPEVEFPISVEI 145
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: UPI001C62C68C (50S ribosomal protein L9 n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62C68C) HSP 1 Score: 107 bits (267), Expect = 9.380e-28 Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 1
Query: 13 VRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVVEA 291
+++A+ RA AEEVA LVP+ +T+ AKAG GRLFGSVG AE+ EA+E QTG+V+DRR L L+ P+K+ G+ + +LHP V+FP+ ++VV A
Sbjct: 56 IKDASDRASAEEVAKVLVPTTVTVTAKAGTEGRLFGSVGTAEVAEAIEEQTGIVIDRRRLILDEPIKETGEHQLTARLHPAVQFPVRIEVVGA 148
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A5Q2RSI2_9ACTN (50S ribosomal protein L9 n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RSI2_9ACTN) HSP 1 Score: 106 bits (265), Expect = 1.890e-27 Identity = 54/95 (56.84%), Postives = 75/95 (78.95%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
R+ V++AA+RA A+E+A+ LVP+VITI+AKAG G+LFGSV A++ EAV++QTG+ +DRR ++L+ P+K G V KLH EVEFPITV+VV
Sbjct: 52 RSRDVKDAAARAAAQEIASTLVPTVITISAKAGGEGKLFGSVTTADVAEAVQSQTGIEIDRRQIHLDEPIKTTGTHTVPAKLHSEVEFPITVEVV 146
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: UPI001AA09A13 (50S ribosomal protein L9 n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA09A13) HSP 1 Score: 103 bits (258), Expect = 2.170e-26 Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
R+ +++AA R AEEVA LVP+VIT+AAKAG GRLFGSV A++VEAV +QTG+ +DR+ L+L+ P+K LG V KLH +VEF ITVDV+
Sbjct: 52 RSRDLKDAADRGAAEEVAKVLVPAVITVAAKAGTEGRLFGSVTTADVVEAVASQTGIRLDRKLLHLDEPIKTLGTHSVQAKLHSDVEFAITVDVI 146
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Match: A0A6G0A7T6_9ACTN (50S ribosomal protein L9 n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A7T6_9ACTN) HSP 1 Score: 101 bits (251), Expect = 2.480e-25 Identity = 54/95 (56.84%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 1 RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAVEAQTGVVVDRRSLNLEHPLKDLGQSMVMCKLHPEVEFPITVDVV 285
RA + A R AEE+AT+LV +V+TI AKAGEGGRLFGSV ++I AV QTG+ +DRR + LE P+K++G V +LH EVEFPITV+VV
Sbjct: 52 RARDQKEARDRGAAEEIATQLVSAVVTIDAKAGEGGRLFGSVTTSDISAAVLDQTGIEIDRRMIALEEPIKNVGSHQVAARLHAEVEFPITVEVV 146 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113130.2742.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig113130.2742.1 >prot_M-pyrifera_M_contig113130.2742.1 ID=prot_M-pyrifera_M_contig113130.2742.1|Name=mRNA_M-pyrifera_M_contig113130.2742.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp RAASVRNAASRAEAEEVATKLVPSVITIAAKAGEGGRLFGSVGEAEIVEAback to top mRNA from alignment at M-pyrifera_M_contig113130:286..579- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig113130.2742.1 ID=mRNA_M-pyrifera_M_contig113130.2742.1|Name=mRNA_M-pyrifera_M_contig113130.2742.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig113130:286..579- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig113130:286..579- >mRNA_M-pyrifera_M_contig113130.2742.1 ID=mRNA_M-pyrifera_M_contig113130.2742.1|Name=mRNA_M-pyrifera_M_contig113130.2742.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig113130:286..579- (Macrocystis pyrifera P11B4 male)back to top |