mRNA_M-pyrifera_M_contig10128.274.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10128.274.1
Unique NamemRNA_M-pyrifera_M_contig10128.274.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: D8LP20_ECTSI (Vacuolar protein sorting-associated protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP20_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.230e-20
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
             +  GYLVLEDMHIKK  +D LELPL L+HGIIGRL+++IPWS+L+KDPI+VDVDRV
Sbjct:   31 GIWRGYLVLEDMHIKKTLMDMLELPLALRHGIIGRLQIQIPWSTLNKDPILVDVDRV 87
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A6H5JPL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.710e-15
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:   34 MHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            MHIKK  +D LELPL L+HGIIGRL+++IPWS+L+KDPI+VDVDR+
Sbjct:    1 MHIKKTLMDMLELPLALRHGIIGRLQIQIPWSTLNKDPILVDVDRI 46
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A175YPS3_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A175YPS3_DAUCS)

HSP 1 Score: 62.0 bits (149), Expect = 8.560e-10
Identity = 25/57 (43.86%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            +V +G ++L+D+ +K   L++L+LP+T+K G+IG + +++PW SL K+P+IV +DRV
Sbjct:   29 SVWKGDVLLKDLKLKAEALNSLQLPVTVKAGLIGTITLKVPWKSLGKEPVIVLIDRV 85
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A836CEC6_9STRA (Vacuolar protein sorting-associated protein 13A N-terminal domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEC6_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.270e-9
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
             V  G LVLE+M +K   LD  +LPL L+HG IGRLE++IP + L  DPI+  ++ V
Sbjct:   31 GVWSGNLVLENMTLKASVLDPAQLPLELRHGRIGRLELKIPLTRLGTDPIVATLEHV 87
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: UPI001924ADB6 (LOW QUALITY PROTEIN: uncharacterized protein LOC120160726 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001924ADB6)

HSP 1 Score: 60.5 bits (145), Expect = 2.990e-9
Identity = 23/57 (40.35%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            +V +G +VLED+ +K   L++L LP+++K G++G + +++PW SL  +P+IV +DR+
Sbjct:   29 SVWQGDVVLEDLKLKAEALNSLNLPVSVKAGVVGTITLKVPWKSLGNEPVIVLIDRI 85
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A7J7Q829_9CHLO (Peroxin/Ferlin domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q829_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 2.990e-9
Identity = 23/57 (40.35%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            +V  G + L ++ +K   L+ L+LP+T+K G++GRL +++PWSSL + P++V++DR+
Sbjct:   29 SVWRGDVELRNLRLKPEALEELQLPITVKSGLLGRLTLKVPWSSLGQQPVVVELDRL 85
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A2P6NY36_9EUKA (LisH domain-containing protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NY36_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 5.590e-9
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   13 GYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            G +VL+D+ I K  L+ L LP  LKHGIIG+L +++PW SL   P++V V  V
Sbjct:   34 GDVVLQDLEINKDALNNLGLPFELKHGIIGKLVLKVPWQSLKSKPVVVQVSEV 86
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A7S2QZL1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2QZL1_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 2.510e-8
Identity = 21/57 (36.84%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            + L G ++L ++ +K+  L  L  P+TL  G+IG L +++PW+ L ++P++V++DRV
Sbjct:   31 SALRGDVLLRNVQLKRDALRALNAPVTLDAGVIGSLRLKVPWTKLGQEPVVVEIDRV 87
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BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A803L5R2_CHEQI (PH domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803L5R2_CHEQI)

HSP 1 Score: 57.4 bits (137), Expect = 3.660e-8
Identity = 22/57 (38.60%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            +V +G +VL +M +K   L+ L+LP+ +K G +G + +++PWS L +DP+IV++D +
Sbjct:   29 SVWQGNVVLTNMQLKPEALNALKLPIKVKAGFLGSVTLKVPWSKLGQDPVIVELDEI 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Match: A0A803LUA7_CHEQI (PH domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LUA7_CHEQI)

HSP 1 Score: 57.4 bits (137), Expect = 3.660e-8
Identity = 22/57 (38.60%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPIIVDVDRV 171
            +V +G +VL +M +K   L+ L+LP+ +K G +G + +++PWS L +DP+IV++D +
Sbjct:   29 SVWQGNVVLTNMQLKPEALNALKLPIKVKAGFLGSVTLKVPWSKLGQDPVIVELDEI 85
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10128.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LP20_ECTSI1.230e-2071.93Vacuolar protein sorting-associated protein, putat... [more]
A0A6H5JPL9_9PHAE1.710e-1571.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A175YPS3_DAUCS8.560e-1043.86Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
A0A836CEC6_9STRA1.270e-949.12Vacuolar protein sorting-associated protein 13A N-... [more]
UPI001924ADB62.990e-940.35LOW QUALITY PROTEIN: uncharacterized protein LOC12... [more]
A0A7J7Q829_9CHLO2.990e-940.35Peroxin/Ferlin domain-containing protein n=1 Tax=S... [more]
A0A2P6NY36_9EUKA5.590e-949.06LisH domain-containing protein n=1 Tax=Planoprotos... [more]
A0A7S2QZL1_9CHLO2.510e-836.84Hypothetical protein (Fragment) n=1 Tax=Ostreococc... [more]
A0A803L5R2_CHEQI3.660e-838.60PH domain-containing protein n=1 Tax=Chenopodium q... [more]
A0A803LUA7_CHEQI3.660e-838.60PH domain-containing protein n=1 Tax=Chenopodium q... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10128contigM-pyrifera_M_contig10128:6126..6296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue5.5e-17
Seed eggNOG ortholog2880.D8LP20
KEGG koko:K19525
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000045,GO:0006810,GO:0006914,GO:0006996,GO:0007033,GO:0007034,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0016043,GO:0016192,GO:0016236,GO:0022607,GO:0030587,GO:0031154,GO:0032502,GO:0044085,GO:0044237,GO:0044248,GO:0045324,GO:0046907,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0061919,GO:0070925,GO:0071840,GO:0090702,GO:0099120,GO:1905037
EggNOG free text desc.regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
EggNOG OGsCOG5043@1,KOG1809@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.6635518-CDS-M-pyrifera_M_contig10128:6125..62961622815510.6635518-CDS-M-pyrifera_M_contig10128:6125..6296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10128 6126..6296 +
1692277444.1859686-CDS-M-pyrifera_M_contig10128:6125..62961692277444.1859686-CDS-M-pyrifera_M_contig10128:6125..6296Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10128 6126..6296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10128.274.1prot_M-pyrifera_M_contig10128.274.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10128 6126..6296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10128.274.1

>prot_M-pyrifera_M_contig10128.274.1 ID=prot_M-pyrifera_M_contig10128.274.1|Name=mRNA_M-pyrifera_M_contig10128.274.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
AVLEGYLVLEDMHIKKRFLDTLELPLTLKHGIIGRLEMRIPWSSLHKDPI
IVDVDRV
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mRNA from alignment at M-pyrifera_M_contig10128:6126..6296+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10128.274.1 ID=mRNA_M-pyrifera_M_contig10128.274.1|Name=mRNA_M-pyrifera_M_contig10128.274.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig10128:6126..6296+ (Macrocystis pyrifera P11B4 male)
GCCGTTCTTGAAGGCTACCTTGTCCTCGAAGACATGCACATCAAAAAACG
TTTTTTGGACACGCTGGAACTCCCGCTAACGCTCAAGCACGGCATCATCG
GTCGCTTGGAAATGCGAATACCTTGGTCGAGCCTCCACAAGGACCCCATC
ATCGTCGACGTTGACCGGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10128:6126..6296+

>mRNA_M-pyrifera_M_contig10128.274.1 ID=mRNA_M-pyrifera_M_contig10128.274.1|Name=mRNA_M-pyrifera_M_contig10128.274.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig10128:6126..6296+ (Macrocystis pyrifera P11B4 male)
GCCGTTCTTGAAGGCTACCTTGTCCTCGAAGACATGCACATCAAAAAACG
TTTTTTGGACACGCTGGAACTCCCGCTAACGCTCAAGCACGGCATCATCG
GTCGCTTGGAAATGCGAATACCTTGGTCGAGCCTCCACAAGGACCCCATC
ATCGTCGACGTTGACCGGGTGGCCGTTCTTGAAGGCTACCTTGTCCTCGA
AGACATGCACATCAAAAAACGTTTTTTGGACACGCTGGAACTCCCGCTAA
CGCTCAAGCACGGCATCATCGGTCGCTTGGAAATGCGAATACCTTGGTCG
AGCCTCCACAAGGACCCCATCATCGTCGACGTTGACCGGGTG
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