mRNA_M-pyrifera_M_contig113109.2735.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113109.2735.1
Unique NamemRNA_M-pyrifera_M_contig113109.2735.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A2E8DB35_9PLAN (Protoglobin domain-containing protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2E8DB35_9PLAN)

HSP 1 Score: 228 bits (581), Expect = 5.500e-74
Identity = 102/147 (69.39%), Postives = 128/147 (87.07%), Query Frame = 1 
Query:    1 GPRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            GPRI ELV+KTY+KLLSYD TARHF+P+Q G DGDVP+D++ +   HPQIQFRKDHLNRYF+QLIGRSYDAKMV +LDMVGK+HTP+AGN  I+VPL+QMNAL+GL+SD L++++AE P+D  + ++T RAF+KLLWIQND + RHY
Sbjct:   42 GPRIPELVEKTYQKLLSYDTTARHFVPRQDGYDGDVPVDIAALSATHPQIQFRKDHLNRYFMQLIGRSYDAKMVLYLDMVGKMHTPRAGNASIDVPLVQMNALMGLLSDTLMQSIAEWPVDTATVMRTARAFNKLLWIQNDLINRHY 188
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A3L7Q2H8_9BACT (Protoglobin domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7Q2H8_9BACT)

HSP 1 Score: 212 bits (539), Expect = 1.220e-67
Identity = 95/148 (64.19%), Postives = 127/148 (85.81%), Query Frame = 1 
Query:    1 GPRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHYS 444
            GPRI +LV+ TY+KLL+YD TARHF+P+Q G +G  P +L E+  +HPQIQFRKDHLNRYF+ LIGR+YDAKMVQ+LDMVG++HTP+AGNK+I+VPL+QMNAL+G++S++LL +++E P+     LKT +AF+KLLWIQNDF+ RHY+
Sbjct:   42 GPRIPQLVEATYQKLLAYDATARHFVPRQTGYEGPTPANLKELTAEHPQIQFRKDHLNRYFIALIGRAYDAKMVQYLDMVGRMHTPKAGNKEIDVPLVQMNALMGVLSNVLLTSISEWPIPPEVQLKTIQAFNKLLWIQNDFINRHYA 189
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A517YAF1_9BACT (Protoglobin domain-containing protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517YAF1_9BACT)

HSP 1 Score: 211 bits (536), Expect = 4.250e-67
Identity = 96/147 (65.31%), Postives = 125/147 (85.03%), Query Frame = 1 
Query:    1 GPRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            GP I +LV+KTYEKLLSYD TARHF+P+Q G +G +P  ++ +   HPQ++FRK+HL+RYF+QL+GRSYDAKMVQ+LDMVGK+HTP+AG+K+I+VPL+QMNAL+GL+ D L EA+++ PLD  + L+T RAF KLLWIQNDFV RHY
Sbjct:   42 GPLIPQLVEKTYEKLLSYDATARHFVPKQAGYEGPLPGGVANLTLSHPQVRFRKEHLSRYFMQLLGRSYDAKMVQYLDMVGKMHTPKAGSKEIDVPLVQMNALLGLLVDTLTEAISQQPLDNATMLRTLRAFHKLLWIQNDFVTRHY 188
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A3L7N7A1_9BACT (Protoglobin domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7N7A1_9BACT)

HSP 1 Score: 199 bits (506), Expect = 1.600e-62
Identity = 93/147 (63.27%), Postives = 118/147 (80.27%), Query Frame = 1 
Query:    1 GPRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            GP I ELVDKTY++LL++DVTARHF+P+Q G +G VP DL+ +   HPQIQFRK+HL RY   L+GR+ DAK+V +LDMVGK+HTP AG+K+I+VPL+QMNAL+G +SDMLL+ + + PLD  S     RAFSKLLWIQNDF+ RHY
Sbjct:   42 GPLIPELVDKTYQRLLAFDVTARHFVPRQSGFEGQVPTDLASLSATHPQIQFRKEHLARYLATLLGRTCDAKLVPYLDMVGKMHTPLAGSKEIDVPLVQMNALMGFLSDMLLDVLMQLPLDEPSKGLAIRAFSKLLWIQNDFITRHY 188
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A517R8G0_9PLAN (Protoglobin domain-containing protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R8G0_9PLAN)

HSP 1 Score: 194 bits (494), Expect = 1.210e-60
Identity = 91/146 (62.33%), Postives = 112/146 (76.71%), Query Frame = 1 
Query:    4 PRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            P IG+LVD TYEKLLSYD TARHF+P+QHG +G VP  L  +     QI+FRKDHL RYF+QL+G +YD+K+V +LDMVGKIHTP+AGN+ I+VPLIQMN L+GL+SD L E + E  L     +   RAF+KLLWIQNDF+ RHY
Sbjct:   43 PHIGKLVDATYEKLLSYDATARHFVPRQHGYEGAVPDSLDSLSDQSAQIKFRKDHLQRYFMQLLGHAYDSKIVLYLDMVGKIHTPKAGNQQIDVPLIQMNVLLGLISDKLTETLLELDLAPDQKIAALRAFNKLLWIQNDFISRHY 188
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A3L7RMI1_9BACT (Protoglobin domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RMI1_9BACT)

HSP 1 Score: 194 bits (493), Expect = 1.210e-60
Identity = 91/147 (61.90%), Postives = 115/147 (78.23%), Query Frame = 1 
Query:    1 GPRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            GP I ELV+KTY +LL+YD TARHF+P+Q G +G  PIDL  +   HPQIQFRK+HL RY   L+GR+ DAK+V +LDMVG+IHTPQAGNK+INVPL+QMNAL+G +SD LLEA+   PL+ +      RAF++LLW+QNDF+ RHY
Sbjct:   42 GPMIPELVEKTYARLLAYDATARHFLPRQSGFEGAPPIDLQTLTSAHPQIQFRKEHLARYLSTLLGRTCDAKLVPYLDMVGRIHTPQAGNKEINVPLVQMNALMGHLSDTLLEALFALPLELSEKTMVIRAFNRLLWVQNDFINRHY 188
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A7C3G1T2_9BACT (Protoglobin domain-containing protein n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7C3G1T2_9BACT)

HSP 1 Score: 193 bits (490), Expect = 8.590e-60
Identity = 87/147 (59.18%), Postives = 117/147 (79.59%), Query Frame = 1 
Query:    4 PRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHYS 444
            PR+ ++V+ TYEKLL+YD TARHF+P+Q G DG  P DL+ +  +HPQI+FRK+HL RYFL L+G +++ KMV +LDMVGK+HTP+AGN  I+VPL+QMNAL+GL+SD+L   +AE  L   + L+  RAF+KLLWIQNDF+ RHY+
Sbjct:   43 PRVPQMVEATYEKLLAYDATARHFVPRQAGYDGPTPTDLASVHQEHPQIRFRKEHLQRYFLHLLGHAFNEKMVAYLDMVGKMHTPEAGNPAIDVPLVQMNALMGLVSDILWRTLAELDLAPETFLRVGRAFNKLLWIQNDFISRHYA 189
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A517WWS3_9PLAN (Protoglobin domain-containing protein n=3 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WWS3_9PLAN)

HSP 1 Score: 190 bits (482), Expect = 8.270e-59
Identity = 88/146 (60.27%), Postives = 111/146 (76.03%), Query Frame = 1 
Query:    4 PRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            PRI  LVD TYE+LL+YD TARHF+P+QHG +G VP  L E+  +  QI+FRKDHL RYF++L+G SYDAKMV +LDMVGKIHTP+AGN+ +++ L+QMNAL+GL+SD L+E   E  +         RAF KLLWIQNDF+ RHY
Sbjct:   51 PRINGLVDATYERLLNYDATARHFVPRQHGYEGAVPESLEELTAEENQIKFRKDHLQRYFMKLLGHSYDAKMVLYLDMVGKIHTPKAGNEQLDISLVQMNALLGLISDQLIEIFLELDIPDDQKFAAIRAFQKLLWIQNDFISRHY 196
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BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A2G2L837_9BACT (Protoglobin domain-containing protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2L837_9BACT)

HSP 1 Score: 189 bits (481), Expect = 8.290e-59
Identity = 83/147 (56.46%), Postives = 118/147 (80.27%), Query Frame = 1 
Query:    4 PRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHYS 444
            P   ++VD TY+KLL+YD TARHF+P+QH  +GDVP  ++++   H QI+FRK+HL+RY ++LIG +YD+KMV++LD+VGK+HTP AGNK I+VPL+QMNAL+G++SD+L E + +  LDA  T +  RAF+KL+WIQND + RHY+
Sbjct:   43 PMFPKMVDATYDKLLAYDATARHFVPRQHNYEGDVPETMADLSQTHEQIKFRKEHLSRYLMRLIGNAYDSKMVKYLDVVGKMHTPGAGNKSIDVPLVQMNALMGVLSDILTEMILQLDLDAKITTQMVRAFNKLMWIQNDLINRHYA 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Match: A0A3E0N4K8_9BACT (Protoglobin domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0N4K8_9BACT)

HSP 1 Score: 189 bits (480), Expect = 1.470e-58
Identity = 83/146 (56.85%), Postives = 116/146 (79.45%), Query Frame = 1 
Query:    4 PRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQIQFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQMNALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHY 441
            P I  +V++TYEKLL+YD TARHF+P+QHG DG++P  L+ +  D  QIQFRK+HL+RY + L+G +Y+ KM ++LDMVGK+HTPQAG+++I+VPL+QMNAL+GL+SD LL  + E  LDA + +   R+++KLLWIQND + RHY
Sbjct:   43 PHINRIVERTYEKLLAYDATARHFLPRQHGFDGELPASLAALSADDAQIQFRKEHLSRYLMHLLGHAYNDKMAEYLDMVGKMHTPQAGSREIDVPLVQMNALMGLLSDCLLTQIMELDLDAATKIDAVRSWNKLLWIQNDLIGRHY 188
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113109.2735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8DB35_9PLAN5.500e-7469.39Protoglobin domain-containing protein n=1 Tax=Plan... [more]
A0A3L7Q2H8_9BACT1.220e-6764.19Protoglobin domain-containing protein n=1 Tax=Plan... [more]
A0A517YAF1_9BACT4.250e-6765.31Protoglobin domain-containing protein n=1 Tax=Anat... [more]
A0A3L7N7A1_9BACT1.600e-6263.27Protoglobin domain-containing protein n=1 Tax=Plan... [more]
A0A517R8G0_9PLAN1.210e-6062.33Protoglobin domain-containing protein n=1 Tax=Gime... [more]
A0A3L7RMI1_9BACT1.210e-6061.90Protoglobin domain-containing protein n=1 Tax=Plan... [more]
A0A7C3G1T2_9BACT8.590e-6059.18Protoglobin domain-containing protein n=1 Tax=Bryo... [more]
A0A517WWS3_9PLAN8.270e-5960.27Protoglobin domain-containing protein n=3 Tax=Gime... [more]
A0A2G2L837_9BACT8.290e-5956.46Protoglobin domain-containing protein n=1 Tax=Blas... [more]
A0A3E0N4K8_9BACT1.470e-5856.85Protoglobin domain-containing protein n=1 Tax=Plan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113109contigM-pyrifera_M_contig113109:134..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score176.0
Seed ortholog evalue1.3e-41
Seed eggNOG ortholog1210884.HG799470_gene14366
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protoglobin
EggNOG OGs2B1KF@1,2IYWP@203682,2ZBTU@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.8795638-CDS-M-pyrifera_M_contig113109:133..5801622815645.8795638-CDS-M-pyrifera_M_contig113109:133..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113109 134..580 -
1692277503.1505692-CDS-M-pyrifera_M_contig113109:133..5801692277503.1505692-CDS-M-pyrifera_M_contig113109:133..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113109 134..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113109.2735.1prot_M-pyrifera_M_contig113109.2735.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113109 134..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113109.2735.1

>prot_M-pyrifera_M_contig113109.2735.1 ID=prot_M-pyrifera_M_contig113109.2735.1|Name=mRNA_M-pyrifera_M_contig113109.2735.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
GPRIGELVDKTYEKLLSYDVTARHFIPQQHGDDGDVPIDLSEIGPDHPQI
QFRKDHLNRYFLQLIGRSYDAKMVQFLDMVGKIHTPQAGNKDINVPLIQM
NALIGLMSDMLLEAVAESPLDATSTLKTQRAFSKLLWIQNDFVQRHYS*
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mRNA from alignment at M-pyrifera_M_contig113109:134..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113109.2735.1 ID=mRNA_M-pyrifera_M_contig113109.2735.1|Name=mRNA_M-pyrifera_M_contig113109.2735.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig113109:134..580- (Macrocystis pyrifera P11B4 male)
GGGCCAAGGATTGGCGAACTGGTTGACAAGACATATGAGAAACTTCTCAG
CTACGACGTCACTGCAAGACACTTCATTCCCCAGCAACATGGTGACGATG
GCGACGTCCCCATTGACCTCTCCGAGATTGGCCCCGATCATCCGCAGATT
CAATTTCGCAAGGACCACCTCAATCGCTACTTCCTGCAGCTCATCGGCCG
GTCTTACGACGCGAAGATGGTGCAGTTCCTCGACATGGTCGGCAAGATCC
ACACGCCACAAGCCGGCAACAAGGACATCAACGTGCCGCTGATCCAGATG
AACGCACTGATTGGTCTGATGTCCGACATGCTTCTGGAAGCAGTCGCCGA
GTCACCATTGGACGCAACGTCGACTCTCAAGACGCAGCGGGCGTTCTCAA
AACTGCTCTGGATTCAGAACGACTTTGTGCAACGACACTATTCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113109:134..580-

>mRNA_M-pyrifera_M_contig113109.2735.1 ID=mRNA_M-pyrifera_M_contig113109.2735.1|Name=mRNA_M-pyrifera_M_contig113109.2735.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig113109:134..580- (Macrocystis pyrifera P11B4 male)
GGGCCAAGGATTGGCGAACTGGTTGACAAGACATATGAGAAACTTCTCAG
CTACGACGTCACTGCAAGACACTTCATTCCCCAGCAACATGGTGACGATG
GCGACGTCCCCATTGACCTCTCCGAGATTGGCCCCGATCATCCGCAGATT
CAATTTCGCAAGGACCACCTCAATCGCTACTTCCTGCAGCTCATCGGCCG
GTCTTACGACGCGAAGATGGTGCAGTTCCTCGACATGGTCGGCAAGATCC
ACACGCCACAAGCCGGCAACAAGGACATCAACGTGCCGCTGATCCAGATG
AACGCACTGATTGGTCTGATGTCCGACATGCTTCTGGAAGCAGTCGCCGA
GTCACCATTGGACGCAACGTCGACTCTCAAGACGCAGCGGGCGTTCTCAA
AACTGCTCTGGATTCAGAACGACTTTGTGCAACGACACTATTCCTGAGGG
CCAAGGATTGGCGAACTGGTTGACAAGACATATGAGAAACTTCTCAGCTA
CGACGTCACTGCAAGACACTTCATTCCCCAGCAACATGGTGACGATGGCG
ACGTCCCCATTGACCTCTCCGAGATTGGCCCCGATCATCCGCAGATTCAA
TTTCGCAAGGACCACCTCAATCGCTACTTCCTGCAGCTCATCGGCCGGTC
TTACGACGCGAAGATGGTGCAGTTCCTCGACATGGTCGGCAAGATCCACA
CGCCACAAGCCGGCAACAAGGACATCAACGTGCCGCTGATCCAGATGAAC
GCACTGATTGGTCTGATGTCCGACATGCTTCTGGAAGCAGTCGCCGAGTC
ACCATTGGACGCAACGTCGACTCTCAAGACGCAGCGGGCGTTCTCAAAAC
TGCTCTGGATTCAGAACGACTTTGTGCAACGACACTATTCCTGA
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