mRNA_M-pyrifera_M_contig10127.273.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10127.273.1
Unique NamemRNA_M-pyrifera_M_contig10127.273.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10127.273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10127contigM-pyrifera_M_contig10127:6570..7067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10127.273.1prot_M-pyrifera_M_contig10127.273.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10127 6590..6967 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.5883007-UTR-M-pyrifera_M_contig10127:6569..65891622815510.5883007-UTR-M-pyrifera_M_contig10127:6569..6589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10127 6570..6589 +
1692277444.153007-UTR-M-pyrifera_M_contig10127:6569..65891692277444.153007-UTR-M-pyrifera_M_contig10127:6569..6589Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10127 6570..6589 +
1622815510.6260068-UTR-M-pyrifera_M_contig10127:6967..70671622815510.6260068-UTR-M-pyrifera_M_contig10127:6967..7067Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10127 6968..7067 +
1692277444.1759222-UTR-M-pyrifera_M_contig10127:6967..70671692277444.1759222-UTR-M-pyrifera_M_contig10127:6967..7067Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig10127 6968..7067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.6095145-CDS-M-pyrifera_M_contig10127:6589..69671622815510.6095145-CDS-M-pyrifera_M_contig10127:6589..6967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10127 6590..6967 +
1692277444.1626673-CDS-M-pyrifera_M_contig10127:6589..69671692277444.1626673-CDS-M-pyrifera_M_contig10127:6589..6967Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10127 6590..6967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10127.273.1

>prot_M-pyrifera_M_contig10127.273.1 ID=prot_M-pyrifera_M_contig10127.273.1|Name=mRNA_M-pyrifera_M_contig10127.273.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MDGWMMLIGACDSERRKAARAWVCLDGSGLNRCNRNASFRTENLVICRIS
LFTIDSLVPTWSIFQKPWIAGEQGRILRCIYVCSGGKEPLYLWEAWNLFA
VVSRCADFMENQELCEGDRKGMGAR*
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mRNA from alignment at M-pyrifera_M_contig10127:6570..7067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10127.273.1 ID=mRNA_M-pyrifera_M_contig10127.273.1|Name=mRNA_M-pyrifera_M_contig10127.273.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig10127:6570..7067+ (Macrocystis pyrifera P11B4 male)
CGTGGACGAGGGGACAGCGGATGGATGGGTGGATGATGCTGATTGGAGCT
TGTGATAGTGAGCGAAGGAAGGCCGCGAGAGCATGGGTGTGTCTCGACGG
TTCGGGACTGAACCGGTGCAACAGAAACGCAAGCTTCCGTACAGAAAATC
TGGTGATTTGTCGTATCAGTCTGTTTACAATCGACTCGTTGGTCCCGACA
TGGTCGATTTTCCAGAAGCCATGGATTGCGGGGGAGCAGGGCCGTATATT
ACGATGCATTTATGTGTGCTCTGGTGGAAAGGAGCCGCTTTACCTGTGGG
AAGCGTGGAATCTGTTTGCTGTTGTTTCGCGCTGTGCTGATTTTATGGAA
AATCAGGAGCTGTGCGAGGGAGATCGGAAAGGAATGGGAGCGAGGTAGGG
AGAGTGACGCTCGCTTGTCTTTTCTGGCTCGCTTGTCTTTTTTTTGGTTG
TTTGTAATTGGTCGGTTCGTTGGTTGATTGTGTACAGACAGGCGAGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10127:6570..7067+

>mRNA_M-pyrifera_M_contig10127.273.1 ID=mRNA_M-pyrifera_M_contig10127.273.1|Name=mRNA_M-pyrifera_M_contig10127.273.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig10127:6570..7067+ (Macrocystis pyrifera P11B4 male)
ATGGATGGGTGGATGATGCTGATTGGAGCTTGTGATAGTGAGCGAAGGAA
GGCCGCGAGAGCATGGGTGTGTCTCGACGGTTCGGGACTGAACCGGTGCA
ACAGAAACGCAAGCTTCCGTACAGAAAATCTGGTGATTTGTCGTATCAGT
CTGTTTACAATCGACTCGTTGGTCCCGACATGGTCGATTTTCCAGAAGCC
ATGGATTGCGGGGGAGCAGGGCCGTATATTACGATGCATTTATGTGTGCT
CTGGTGGAAAGGAGCCGCTTTACCTGTGGGAAGCGTGGAATCTGTTTGCT
GTTGTTTCGCGCTGTGCTGATTTTATGGAAAATCAGGAGCTGTGCGAGGG
AGATCGGAAAGGAATGGGAGCGAGGTAGATGGATGGGTGGATGATGCTGA
TTGGAGCTTGTGATAGTGAGCGAAGGAAGGCCGCGAGAGCATGGGTGTGT
CTCGACGGTTCGGGACTGAACCGGTGCAACAGAAACGCAAGCTTCCGTAC
AGAAAATCTGGTGATTTGTCGTATCAGTCTGTTTACAATCGACTCGTTGG
TCCCGACATGGTCGATTTTCCAGAAGCCATGGATTGCGGGGGAGCAGGGC
CGTATATTACGATGCATTTATGTGTGCTCTGGTGGAAAGGAGCCGCTTTA
CCTGTGGGAAGCGTGGAATCTGTTTGCTGTTGTTTCGCGCTGTGCTGATT
TTATGGAAAATCAGGAGCTGTGCGAGGGAGATCGGAAAGGAATGGGAGCG
AGGTAG
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