prot_M-pyrifera_M_contig113081.2721.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig113081.2721.1
Unique Nameprot_M-pyrifera_M_contig113081.2721.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length53
Homology
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: M2Y4U9_GALSU (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4U9_GALSU)

HSP 1 Score: 58.5 bits (140), Expect = 6.160e-10
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 51
            MNL+LSD  ET    E D +TGEEL +A  RK+PM++VRGD VIL+ PP R
Sbjct:   38 MNLVLSDVEETALKVEVDDETGEELIKAVKRKMPMLFVRGDGVILVAPPLR 88          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A9UTK3_MONBE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UTK3_MONBE)

HSP 1 Score: 56.6 bits (135), Expect = 3.790e-9
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPRA 52
            MN++LS+ VET    + D +TGEEL +   R LPM+YVRGD VIL+ PP RA
Sbjct:   42 MNMVLSNVVETLATVDVDDETGEELVKTAKRVLPMLYVRGDGVILVAPPHRA 93          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A7E4V274_PANRE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4V274_PANRE)

HSP 1 Score: 54.7 bits (130), Expect = 2.720e-8
Identity = 23/51 (45.10%), Postives = 40/51 (78.43%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 51
            +N++LSD VET  + E DP++ EE+ ++ TR++P++++RGD+VIL+  P R
Sbjct:   50 LNMVLSDVVETINIVETDPESSEEIHKSTTREIPLLFIRGDSVILVSTPNR 100          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: F2TZT7_SALR5 (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TZT7_SALR5)

HSP 1 Score: 53.9 bits (128), Expect = 4.170e-8
Identity = 26/51 (50.98%), Postives = 36/51 (70.59%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 51
            +N++LSD VET    E D ++ EE+ +   RK+PM+YVRGD VIL+ PP R
Sbjct:   41 LNMVLSDVVETITTSEIDEESYEEIIKTTERKMPMLYVRGDGVILVAPPMR 91          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A3P7UY54_HELPZ (Sm domain-containing protein n=3 Tax=Heligmosomoides polygyrus TaxID=6339 RepID=A0A3P7UY54_HELPZ)

HSP 1 Score: 50.1 bits (118), Expect = 5.750e-7
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPRA 52
            MN++LS+  ET    E D ++ EE+     R +PM+YVRGD+VIL+ PP RA
Sbjct:    1 MNMILSNVEETVTTSEVDEESFEEIYRQTKRTIPMLYVRGDSVILVSPPVRA 52          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A7J7JVD2_BUGNE (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JVD2_BUGNE)

HSP 1 Score: 51.2 bits (121), Expect = 6.220e-7
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPRA 52
            +N++L DA ET    E D +T EE+ ++  R +PM++VRGD VIL+ PP RA
Sbjct:   49 LNMILGDAEETVTTVEIDDETYEEIYKSTKRTIPMLFVRGDGVILISPPMRA 100          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: A0A2P4W7B6_CAERE (Sm domain-containing protein n=1 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A2P4W7B6_CAERE)

HSP 1 Score: 50.1 bits (118), Expect = 7.730e-7
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPRA 52
            +N++LS+  ET   +E D DT EE+     R +PM++VRGD+VIL+ PP RA
Sbjct:   14 LNMVLSEVEETITTREVDEDTFEEIYRQTKRVVPMLFVRGDSVILVSPPIRA 65          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: F4PV45_CAVFA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PV45_CAVFA)

HSP 1 Score: 50.8 bits (120), Expect = 7.740e-7
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPRA 52
            +N++LSD  ET  + E+D +T EE+ ++  RK+ M++VRGD VIL+ PP R+
Sbjct:   45 LNMILSDVEETIRVVEKDEETDEEIVKSIKRKIKMLFVRGDGVILISPPLRS 96          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: D6WUX0_TRICA (U6 snRNA-associated Sm-like protein LSm3 n=14 Tax=Polyphaga TaxID=41084 RepID=D6WUX0_TRICA)

HSP 1 Score: 50.8 bits (120), Expect = 8.430e-7
Identity = 26/51 (50.98%), Postives = 34/51 (66.67%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 51
            MN++LSDA ET    E D +T EE+     R +PM++VRGD VIL+ PP R
Sbjct:   49 MNMILSDAEETITTVEIDEETYEEVYRTTKRNIPMLFVRGDGVILVSPPMR 99          
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Match: UPI00083BF8BC (U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=Polyphaga TaxID=41084 RepID=UPI00083BF8BC)

HSP 1 Score: 50.8 bits (120), Expect = 8.620e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 0
Query:    1 MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPPR 51
            MN++LSDA ET    E D +T EE+  +  R +PM++VRGD VIL+ PP R
Sbjct:   50 MNMVLSDAEETITTVEIDEETYEEVYRSTKRTIPMLFVRGDGVILVSPPMR 100          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113081.2721.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M2Y4U9_GALSU6.160e-1058.82U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=G... [more]
A9UTK3_MONBE3.790e-955.77U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=M... [more]
A0A7E4V274_PANRE2.720e-845.10U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=P... [more]
F2TZT7_SALR54.170e-850.98U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
A0A3P7UY54_HELPZ5.750e-748.08Sm domain-containing protein n=3 Tax=Heligmosomoid... [more]
A0A7J7JVD2_BUGNE6.220e-748.08U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=B... [more]
A0A2P4W7B6_CAERE7.730e-748.08Sm domain-containing protein n=1 Tax=Caenorhabditi... [more]
F4PV45_CAVFA7.740e-746.15U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]
D6WUX0_TRICA8.430e-750.98U6 snRNA-associated Sm-like protein LSm3 n=14 Tax=... [more]
UPI00083BF8BC8.620e-750.98U6 snRNA-associated Sm-like protein LSm3 n=3 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..50
e-value: 7.2E-8
score: 34.1
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 1..47
e-value: 1.2E-6
score: 28.1
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 1..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113081contigM-pyrifera_M_contig113081:91..249 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113081.2721.1mRNA_M-pyrifera_M_contig113081.2721.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig113081 91..267 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig113081.2721.1 ID=prot_M-pyrifera_M_contig113081.2721.1|Name=mRNA_M-pyrifera_M_contig113081.2721.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MNLMLSDAVETTFLKERDPDTGEELSEAKTRKLPMVYVRGDAVILLRPPP
RA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf