mRNA_M-pyrifera_M_contig113080.2720.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113080.2720.1
Unique NamemRNA_M-pyrifera_M_contig113080.2720.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: UPI001566D046 (DUF4167 domain-containing protein n=1 Tax=Sphingopyxis sp. BSNA05 TaxID=1236614 RepID=UPI001566D046)

HSP 1 Score: 142 bits (359), Expect = 1.300e-40
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 LMNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXXIDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 285
            +MNNRQP RRGR RNTN                ID+RARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQR+AREE
Sbjct:    1 MMNNRQPGRRGRSRNTNNRPQGNRGGGSDRDNRIDNRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRLAREE 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A2D3RBU7_9SPHN (DUF4167 domain-containing protein n=2 Tax=Sphingorhabdus sp. YGSMI21 TaxID=2077182 RepID=A0A2D3RBU7_9SPHN)

HSP 1 Score: 142 bits (359), Expect = 1.920e-40
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    1 LMNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXXIDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 285
            +MNNRQP RRGR RNTN                ID+RARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQR+AREE
Sbjct:    1 MMNNRQPGRRGRSRNTNNRPQGNRGGGSDRDNRIDNRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRLAREE 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A653JRR0_9SPHN (DUF4167 domain-containing protein n=1 Tax=Sphingorhabdus sp. 109 TaxID=2653173 RepID=A0A653JRR0_9SPHN)

HSP 1 Score: 142 bits (358), Expect = 2.580e-40
Identity = 75/94 (79.79%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:    4 MNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXXIDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 285
            MNNRQP RRGR RNTN                ID+RARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE
Sbjct:    1 MNNRQPGRRGRSRNTNNRSQGNRGGGSDRDNRIDNRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 94
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: UPI001593A614 (DUF4167 domain-containing protein n=1 Tax=Parasphingorhabdus flavimaris TaxID=266812 RepID=UPI001593A614)

HSP 1 Score: 138 bits (347), Expect = 1.150e-38
Identity = 75/97 (77.32%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    4 MNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXX--IDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREEA 288
            MNNRQP RRGRGRNTN                  IDSRARGNAAQML+K+KKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE+
Sbjct:    1 MNNRQPGRRGRGRNTNNNNRPQGNRSGGSDRDNRIDSRARGNAAQMLEKFKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREES 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A2M7LEM0_9SPHN (DUF4167 domain-containing protein (Fragment) n=1 Tax=Sphingomonadales bacterium CG_4_10_14_3_um_filter_58_15 TaxID=1974093 RepID=A0A2M7LEM0_9SPHN)

HSP 1 Score: 132 bits (332), Expect = 4.140e-38
Identity = 69/88 (78.41%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 LMNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXXIDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREE 264
            +MNNRQP RRGRGRNTN      X         IDSRARGNA QMLDK+KKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREE
Sbjct:    1 MMNNRQPGRRGRGRNTNNRPQSNXSGGSDRDNRIDSRARGNAVQMLDKFKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREE 88
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A220W8S4_9SPHN (Eukaryotic translation initiation factor 3 subunit 10 n=2 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220W8S4_9SPHN)

HSP 1 Score: 136 bits (342), Expect = 6.530e-38
Identity = 79/97 (81.44%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    4 MNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXX--IDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREEA 288
            MNNRQP RRGRGRNT XXXXX             ID+RARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQR+AREE+
Sbjct:    1 MNNRQPGRRGRGRNTXXXXXXQGNRGGGADRENRIDNRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRMAREES 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A2G2D433_9SPHN (DUF4167 domain-containing protein n=1 Tax=Sphingopyxis sp. TaxID=1908224 RepID=A0A2G2D433_9SPHN)

HSP 1 Score: 134 bits (338), Expect = 2.690e-37
Identity = 86/95 (90.53%), Postives = 90/95 (94.74%), Query Frame = 1 
Query:    1 LMNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXXIDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 285
            +MNNRQ  RRGRGRNTNXXXXXXXXXXXXXXXX  +RARGNA QMLDK+KKMAQDAQVNGDRVQAEYYHQFADHYFRVNADT+ARREEQRIAREE
Sbjct:    1 MMNNRQAGRRGRGRNTNXXXXXXXXXXXXXXXXXXNRARGNAVQMLDKFKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTVARREEQRIAREE 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A1B6ZCI9_9SPHN (DUF4167 domain-containing protein n=1 Tax=Sphingomonadales bacterium EhC05 TaxID=1849171 RepID=A0A1B6ZCI9_9SPHN)

HSP 1 Score: 124 bits (312), Expect = 3.420e-33
Identity = 77/98 (78.57%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:    1 LMNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXX---IDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 285
            +MNNRQP RRGR     XXXXXXXX           ID+RARGNAAQMLDKYKKMAQDAQVNGDRV AEYYHQFADHYFRVNADTIARREEQR+AREE
Sbjct:    1 MMNNRQPPRRGRXXXXXXXXXXXXXRGSGGVDRDNRIDNRARGNAAQMLDKYKKMAQDAQVNGDRVNAEYYHQFADHYFRVNADTIARREEQRLAREE 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: A0A1N6CNG0_9SPHN (DUF4167 domain-containing protein n=1 Tax=Parasphingorhabdus marina DSM 22363 TaxID=1123272 RepID=A0A1N6CNG0_9SPHN)

HSP 1 Score: 118 bits (296), Expect = 4.760e-31
Identity = 74/95 (77.89%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    4 MNNRQPSRRGRGRNTNXXXXXXXXXXXXXXXXIDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREEA 288
            MNNRQ  RR       XXXXXXXXX       ID+RARGNAAQMLDKYKKMAQDAQVNGDRV AEYYHQFADHYFRVNAD+ ARREEQR+AREEA
Sbjct:    1 MNNRQAGRRXXXXXXXXXXXXXXXXGIDRENRIDNRARGNAAQMLDKYKKMAQDAQVNGDRVNAEYYHQFADHYFRVNADSQARREEQRLAREEA 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Match: UPI001E48DBB1 (DUF4167 domain-containing protein n=1 Tax=Parasphingorhabdus litoris TaxID=394733 RepID=UPI001E48DBB1)

HSP 1 Score: 115 bits (289), Expect = 7.220e-30
Identity = 57/62 (91.94%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:  100 IDSRARGNAAQMLDKYKKMAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREE 285
            ID+RARGNAAQMLDKYKKMAQDAQVNGDRV AEYYHQFADHYFRVNAD+ ARREEQR+AREE
Sbjct:   35 IDNRARGNAAQMLDKYKKMAQDAQVNGDRVNAEYYHQFADHYFRVNADSQARREEQRLAREE 96
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113080.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001566D0461.300e-4077.89DUF4167 domain-containing protein n=1 Tax=Sphingop... [more]
A0A2D3RBU7_9SPHN1.920e-4077.89DUF4167 domain-containing protein n=2 Tax=Sphingor... [more]
A0A653JRR0_9SPHN2.580e-4079.79DUF4167 domain-containing protein n=1 Tax=Sphingor... [more]
UPI001593A6141.150e-3877.32DUF4167 domain-containing protein n=1 Tax=Parasphi... [more]
A0A2M7LEM0_9SPHN4.140e-3878.41DUF4167 domain-containing protein (Fragment) n=1 T... [more]
A0A220W8S4_9SPHN6.530e-3881.44Eukaryotic translation initiation factor 3 subunit... [more]
A0A2G2D433_9SPHN2.690e-3790.53DUF4167 domain-containing protein n=1 Tax=Sphingop... [more]
A0A1B6ZCI9_9SPHN3.420e-3378.57DUF4167 domain-containing protein n=1 Tax=Sphingom... [more]
A0A1N6CNG0_9SPHN4.760e-3177.89DUF4167 domain-containing protein n=1 Tax=Parasphi... [more]
UPI001E48DBB17.220e-3091.94DUF4167 domain-containing protein n=1 Tax=Parasphi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113080contigM-pyrifera_M_contig113080:236..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score98.6
Seed ortholog evalue2e-18
Seed eggNOG ortholog237727.NAP1_11858
Preferred nameOtg1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4167)
EggNOG OGs1N7JV@1224,2K53N@204457,2TR7A@28211,COG5373@1,COG5373@2
COG Functional cat.S
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
Exons1
Model size345
Cds size342
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.9210107-UTR-M-pyrifera_M_contig113080:235..2381622815644.9210107-UTR-M-pyrifera_M_contig113080:235..238Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113080 236..238 +
1692277502.635132-UTR-M-pyrifera_M_contig113080:235..2381692277502.635132-UTR-M-pyrifera_M_contig113080:235..238Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113080 236..238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.9348223-CDS-M-pyrifera_M_contig113080:238..5801622815644.9348223-CDS-M-pyrifera_M_contig113080:238..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113080 239..580 +
1692277502.6449378-CDS-M-pyrifera_M_contig113080:238..5801692277502.6449378-CDS-M-pyrifera_M_contig113080:238..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113080 239..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113080.2720.1prot_M-pyrifera_M_contig113080.2720.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113080 239..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113080.2720.1

>prot_M-pyrifera_M_contig113080.2720.1 ID=prot_M-pyrifera_M_contig113080.2720.1|Name=mRNA_M-pyrifera_M_contig113080.2720.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
MNNRQPSRRGRGRNTNNRPQGNRGGGADRDNRIDSRARGNAAQMLDKYKK
MAQDAQVNGDRVQAEYYHQFADHYFRVNADTIARREEQRIAREEARGEQR
GDNRGNGSAQGDSN
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mRNA from alignment at M-pyrifera_M_contig113080:236..580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113080.2720.1 ID=mRNA_M-pyrifera_M_contig113080.2720.1|Name=mRNA_M-pyrifera_M_contig113080.2720.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=345bp|location=Sequence derived from alignment at M-pyrifera_M_contig113080:236..580+ (Macrocystis pyrifera P11B4 male)
TTGATGAACAATCGTCAACCTAGCCGCCGTGGGCGTGGCCGGAACACCAA
TAACCGTCCTCAGGGTAATCGTGGCGGCGGAGCAGACCGCGATAACCGGA
TCGATAGCCGCGCACGGGGCAACGCCGCGCAGATGCTCGATAAATACAAG
AAAATGGCGCAGGACGCGCAAGTCAATGGCGACCGCGTCCAGGCCGAATA
TTATCATCAGTTTGCCGATCATTATTTCCGGGTGAACGCCGACACAATCG
CTCGCCGCGAAGAACAGCGGATCGCCCGTGAAGAAGCGCGCGGTGAACAG
CGTGGTGATAATCGCGGTAACGGCTCCGCTCAGGGTGATTCCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113080:236..580+

>mRNA_M-pyrifera_M_contig113080.2720.1 ID=mRNA_M-pyrifera_M_contig113080.2720.1|Name=mRNA_M-pyrifera_M_contig113080.2720.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig113080:236..580+ (Macrocystis pyrifera P11B4 male)
ATGAACAATCGTCAACCTAGCCGCCGTGGGCGTGGCCGGAACACCAATAA
CCGTCCTCAGGGTAATCGTGGCGGCGGAGCAGACCGCGATAACCGGATCG
ATAGCCGCGCACGGGGCAACGCCGCGCAGATGCTCGATAAATACAAGAAA
ATGGCGCAGGACGCGCAAGTCAATGGCGACCGCGTCCAGGCCGAATATTA
TCATCAGTTTGCCGATCATTATTTCCGGGTGAACGCCGACACAATCGCTC
GCCGCGAAGAACAGCGGATCGCCCGTGAAGAAGCGCGCGGTGAACAGCGT
GGTGATAATCGCGGTAACGGCTCCGCTCAGGGTGATTCCAATATGAACAA
TCGTCAACCTAGCCGCCGTGGGCGTGGCCGGAACACCAATAACCGTCCTC
AGGGTAATCGTGGCGGCGGAGCAGACCGCGATAACCGGATCGATAGCCGC
GCACGGGGCAACGCCGCGCAGATGCTCGATAAATACAAGAAAATGGCGCA
GGACGCGCAAGTCAATGGCGACCGCGTCCAGGCCGAATATTATCATCAGT
TTGCCGATCATTATTTCCGGGTGAACGCCGACACAATCGCTCGCCGCGAA
GAACAGCGGATCGCCCGTGAAGAAGCGCGCGGTGAACAGCGTGGTGATAA
TCGCGGTAACGGCTCCGCTCAGGGTGATTCCAAT
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