mRNA_M-pyrifera_M_contig113044.2709.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113044.2709.1
Unique NamemRNA_M-pyrifera_M_contig113044.2709.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: A0A392P4S0_9FABA (Non-lysosomal glucosylceramidase-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392P4S0_9FABA)

HSP 1 Score: 108 bits (269), Expect = 4.860e-27
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  +   GQ LYLE +EYQM+NTYDVHFY+SF+L++L+P+LEL++QRDFA A L+H P  M+  LH G++A RK+ GA+PHD+
Sbjct:    5 AYGVSLLQEGEENIGQFLYLEGIEYQMWNTYDVHFYSSFSLVMLFPKLELSVQRDFAAAVLMHDPGKMK-LLHDGQLASRKVLGAVPHDI 93
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BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: A0A7S4I2B7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I2B7_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 8.010e-27
Identity = 47/64 (73.44%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   79 MYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            MYNTYDVHFYASFALI LWPELELNLQR+FA++ L+HAP+     LHS E  PRK+RGA+PHDV
Sbjct:    2 MYNTYDVHFYASFALISLWPELELNLQRNFAKSTLVHAPSDQHLMLHSNETRPRKLRGAVPHDV 65
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BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: A0A5B7BEJ9_DAVIN (Putative non-lysosomal glucosylceramidase (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BEJ9_DAVIN)

HSP 1 Score: 105 bits (261), Expect = 1.030e-26
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A+G   LQ  +   GQ LYLE +EY M+NTYDVHFY+SFAL +L+P+LEL++QRDFA A ++H P+ MR  +H+G+   RK+ GA+PHD+
Sbjct:   60 ASGTNLLQKGEENIGQFLYLEGIEYPMWNTYDVHFYSSFALTMLFPKLELSIQRDFAAAVMMHDPSKMR-LMHNGKWVSRKVLGAVPHDI 148
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BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: UPI0019206E2B (non-lysosomal glucosylceramidase-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019206E2B)

HSP 1 Score: 107 bits (268), Expect = 1.440e-26
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  +   GQ LYLE +EY M NTYDVHFYASFALI+L+PEL+L++QRDFA A ++H P+ M+  L+ G++ PRK+ GA+PHDV
Sbjct:   17 ALGTNLLQEGEENIGQFLYLEGIEYHMRNTYDVHFYASFALIMLFPELQLSIQRDFAAAVIMHDPSKMK-LLNDGQLVPRKVLGAVPHDV 105
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BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: A0A2K2AZH8_POPTR (Uncharacterized protein n=1 Tax=Populus trichocarpa TaxID=3694 RepID=A0A2K2AZH8_POPTR)

HSP 1 Score: 110 bits (276), Expect = 2.160e-26
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  +   GQ LYLE +EY M+NTYDVHFYASFA I+L+P+L+L++QRDFA A ++H P+MM P LH G+  PRK+ GA+PHD+
Sbjct:  511 AFGTNLLQEGEENIGQFLYLEGIEYHMWNTYDVHFYASFAFIMLFPKLQLSIQRDFAAAVMMHDPSMM-PLLHDGQRVPRKVIGAVPHDI 599
[Close]
BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: A0A5D2MTN0_GOSTO (Uncharacterized protein n=1 Tax=Gossypium tomentosum TaxID=34277 RepID=A0A5D2MTN0_GOSTO)

HSP 1 Score: 110 bits (274), Expect = 3.870e-26
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  +   GQ LYLE +EY M+NTYDVHFYASFALI+L+P+L+L++QRDFA A ++H P+ M+  LH G++ PRK+ GA+PHD+
Sbjct:  516 ALGTNLLQEGEENIGQFLYLEGIEYHMWNTYDVHFYASFALIMLFPKLQLSIQRDFAAAVMMHDPSKMK-LLHDGQLVPRKVLGAVPHDI 604
[Close]
BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: W9RAU8_9ROSA (Non-lysosomal glucosylceramidase n=1 Tax=Morus notabilis TaxID=981085 RepID=W9RAU8_9ROSA)

HSP 1 Score: 110 bits (274), Expect = 3.910e-26
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  D   GQ LY E +EYQM+NTYDVHFY+SFAL++L+P+LEL++QRDFA A ++H P+ M+  LH G   PRK+ GAIPHD+
Sbjct:  243 ACGTSLLQKGDENIGQFLYFEGVEYQMWNTYDVHFYSSFALVMLFPKLELSVQRDFAAAVMMHDPSRMK-LLHDGSWGPRKVLGAIPHDI 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: A0A1U8LKY8_GOSHI (Non-lysosomal glucosylceramidase n=20 Tax=Malvoideae TaxID=214907 RepID=A0A1U8LKY8_GOSHI)

HSP 1 Score: 110 bits (274), Expect = 4.070e-26
Identity = 51/90 (56.67%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  +   GQ LYLE +EY M+NTYDVHFYASFALI+L+P+L+L++QRDFA A ++H P+ M+  LH G++ PRK+ GA+PHD+
Sbjct:  516 ALGTNLLQEGEENIGQFLYLEGIEYHMWNTYDVHFYASFALIMLFPKLQLSIQRDFAAAVMMHDPSKMK-LLHDGQLVPRKVLGAVPHDI 604
[Close]
BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: UPI000CED5022 (non-lysosomal glucosylceramidase n=1 Tax=Morus notabilis TaxID=981085 RepID=UPI000CED5022)

HSP 1 Score: 110 bits (274), Expect = 4.070e-26
Identity = 52/90 (57.78%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A G   LQ  D   GQ LY E +EYQM+NTYDVHFY+SFAL++L+P+LEL++QRDFA A ++H P+ M+  LH G   PRK+ GAIPHD+
Sbjct:  516 ACGTSLLQKGDENIGQFLYFEGVEYQMWNTYDVHFYSSFALVMLFPKLELSVQRDFAAAVMMHDPSRMK-LLHDGSWGPRKVLGAIPHDI 604
[Close]
BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Match: UPI00098D92B6 (non-lysosomal glucosylceramidase isoform X1 n=2 Tax=Cajanus cajan TaxID=3821 RepID=UPI00098D92B6)

HSP 1 Score: 109 bits (273), Expect = 5.550e-26
Identity = 52/90 (57.78%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 AAGPEGLQMIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFARAALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV 270
            A+G   LQ  +   GQ LYLE +EYQM+NTYDVHFY+SFAL++L+P+LEL++QRDFA A L+H P+ M+  LH G+ A RK+ GA+PHD+
Sbjct:  510 ASGVNLLQEGEENIGQFLYLEGVEYQMWNTYDVHFYSSFALVMLFPKLELSIQRDFAAAVLMHDPSKMK-LLHDGQWAQRKVLGAVPHDI 598
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113044.2709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A392P4S0_9FABA4.860e-2756.67Non-lysosomal glucosylceramidase-like (Fragment) n... [more]
A0A7S4I2B7_9EUKA8.010e-2773.44Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A5B7BEJ9_DAVIN1.030e-2654.44Putative non-lysosomal glucosylceramidase (Fragmen... [more]
UPI0019206E2B1.440e-2657.78non-lysosomal glucosylceramidase-like n=1 Tax=Hibi... [more]
A0A2K2AZH8_POPTR2.160e-2657.78Uncharacterized protein n=1 Tax=Populus trichocarp... [more]
A0A5D2MTN0_GOSTO3.870e-2656.67Uncharacterized protein n=1 Tax=Gossypium tomentos... [more]
W9RAU8_9ROSA3.910e-2657.78Non-lysosomal glucosylceramidase n=1 Tax=Morus not... [more]
A0A1U8LKY8_GOSHI4.070e-2656.67Non-lysosomal glucosylceramidase n=20 Tax=Malvoide... [more]
UPI000CED50224.070e-2657.78non-lysosomal glucosylceramidase n=1 Tax=Morus not... [more]
UPI00098D92B65.550e-2657.78non-lysosomal glucosylceramidase isoform X1 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113044contigM-pyrifera_M_contig113044:3..272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score110.9
Seed ortholog evalue2.8e-22
Seed eggNOG ortholog4572.TRIUR3_00842-P1
KEGG rclassRC00059,RC00451
KEGG koko:K17108
KEGG ReactionR01498
KEGG Pathwayko00511,ko00600,ko01100,map00511,map00600,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004348,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005790,GO:0005886,GO:0006082,GO:0006629,GO:0006643,GO:0006664,GO:0006665,GO:0006687,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0008202,GO:0008206,GO:0008422,GO:0009056,GO:0009987,GO:0012505,GO:0015926,GO:0016020,GO:0016021,GO:0016137,GO:0016139,GO:0016787,GO:0016798,GO:0019752,GO:0021953,GO:0021954,GO:0022008,GO:0030154,GO:0030182,GO:0031224,GO:0032501,GO:0032502,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0048468,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0071704,GO:0071944,GO:1901135,GO:1901136,GO:1901360,GO:1901564,GO:1901575,GO:1901615,GO:1901657,GO:1901658,GO:1903509
EggNOG free text desc.Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide
EggNOG OGs37JKE@33090,3GG94@35493,3I7VT@38820,3KPX4@4447,COG4354@1,KOG2119@2759
EC3.2.1.45
COG Functional cat.G
CAZyGH116
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size270
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.2229216-CDS-M-pyrifera_M_contig113044:2..2481622815644.2229216-CDS-M-pyrifera_M_contig113044:2..248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113044 3..248 -
1692277502.3970087-CDS-M-pyrifera_M_contig113044:2..2481692277502.3970087-CDS-M-pyrifera_M_contig113044:2..248Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113044 3..248 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.2343783-UTR-M-pyrifera_M_contig113044:248..2721622815644.2343783-UTR-M-pyrifera_M_contig113044:248..272Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113044 249..272 -
1692277502.4100223-UTR-M-pyrifera_M_contig113044:248..2721692277502.4100223-UTR-M-pyrifera_M_contig113044:248..272Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113044 249..272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113044.2709.1prot_M-pyrifera_M_contig113044.2709.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113044 3..248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113044.2709.1

>prot_M-pyrifera_M_contig113044.2709.1 ID=prot_M-pyrifera_M_contig113044.2709.1|Name=mRNA_M-pyrifera_M_contig113044.2709.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
MIDSKFGQLLYLESLEYQMYNTYDVHFYASFALILLWPELELNLQRDFAR
AALIHAPAMMRPTLHSGEMAPRKIRGAIPHDV
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mRNA from alignment at M-pyrifera_M_contig113044:3..272-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113044.2709.1 ID=mRNA_M-pyrifera_M_contig113044.2709.1|Name=mRNA_M-pyrifera_M_contig113044.2709.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=270bp|location=Sequence derived from alignment at M-pyrifera_M_contig113044:3..272- (Macrocystis pyrifera P11B4 male)
GCAGCGGGCCCAGAGGGCCTGCAGATGATCGACAGCAAGTTCGGCCAGCT
GCTCTACCTGGAGTCGCTGGAGTACCAGATGTACAACACCTACGACGTCC
ACTTCTACGCCAGCTTTGCGCTGATTCTCCTCTGGCCAGAGCTGGAGCTG
AACCTCCAGAGGGACTTTGCGCGTGCGGCACTGATCCATGCGCCGGCCAT
GATGCGGCCCACGCTGCATTCTGGTGAGATGGCGCCCAGGAAGATCCGAG
GCGCTATTCCCCACGACGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113044:3..272-

>mRNA_M-pyrifera_M_contig113044.2709.1 ID=mRNA_M-pyrifera_M_contig113044.2709.1|Name=mRNA_M-pyrifera_M_contig113044.2709.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig113044:3..272- (Macrocystis pyrifera P11B4 male)
ATGATCGACAGCAAGTTCGGCCAGCTGCTCTACCTGGAGTCGCTGGAGTA
CCAGATGTACAACACCTACGACGTCCACTTCTACGCCAGCTTTGCGCTGA
TTCTCCTCTGGCCAGAGCTGGAGCTGAACCTCCAGAGGGACTTTGCGCGT
GCGGCACTGATCCATGCGCCGGCCATGATGCGGCCCACGCTGCATTCTGG
TGAGATGGCGCCCAGGAAGATCCGAGGCGCTATTCCCCACGACGTCATGA
TCGACAGCAAGTTCGGCCAGCTGCTCTACCTGGAGTCGCTGGAGTACCAG
ATGTACAACACCTACGACGTCCACTTCTACGCCAGCTTTGCGCTGATTCT
CCTCTGGCCAGAGCTGGAGCTGAACCTCCAGAGGGACTTTGCGCGTGCGG
CACTGATCCATGCGCCGGCCATGATGCGGCCCACGCTGCATTCTGGTGAG
ATGGCGCCCAGGAAGATCCGAGGCGCTATTCCCCACGACGTC
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