mRNA_M-pyrifera_M_contig100115.27.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100115.27.1
Unique NamemRNA_M-pyrifera_M_contig100115.27.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: A0A5A8E5A5_CAFRO (Serine--tRNA ligase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E5A5_CAFRO)

HSP 1 Score: 290 bits (742), Expect = 1.010e-91
Identity = 141/210 (67.14%), Postives = 163/210 (77.62%), Query Frame = 1
Query:   22 EDGADDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRF-IPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVG-KEFIPFTR 645
            E G  +KYLIATSEQP+C FH  + L   ++P +YAGWS+CFRKEAGS GRD  GIFRVHQFEKIEQF V  P +SW +H+EM  TA  FYK+LGI Y V+ +VS ELN+AAA+K DLEGWFP   EYRELVSCSNCTDYQARA+ETRF    K   G K Y H LNSTLCATTRTICAILEN+QT +G++VPEALVPY+G   F+PF R
Sbjct:  248 EKGDSEKYLIATSEQPLCTFHRGDWLNPKDLPVKYAGWSTCFRKEAGSHGRDTWGIFRVHQFEKIEQFVVCAPEDSWRIHEEMIATAEEFYKSLGIAYRVITLVSKELNNAAAKKYDLEGWFPGFSEYRELVSCSNCTDYQARAMETRFGAKTKADNGVKTYAHMLNSTLCATTRTICAILENYQTPDGVKVPEALVPYMGGTTFLPFVR 457          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: A0A152A6B6_9MYCE (Serine--tRNA ligase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A6B6_9MYCE)

HSP 1 Score: 281 bits (718), Expect = 3.670e-90
Identity = 132/203 (65.02%), Postives = 158/203 (77.83%), Query Frame = 1
Query:   37 DKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVGKEFIPFTR 645
            +KYLIATSEQP+  FH  E L E ++P +Y G+S+CFRKEAGSSG+D  GIFRVHQFEKIEQFC+T P +SWDMH+EM   A AFY+ LG+PY VV IVS  LN+AAA+K DLEGWFP  G YRELVSCSNCTDYQ+R +E R    K  + +K Y H LNSTL ATTR IC ILEN+QT +GI VP+ALVPY+G +F+PF +
Sbjct:  236 EKYLIATSEQPISAFHRGEWLEEKQLPLKYLGYSTCFRKEAGSSGKDTWGIFRVHQFEKIEQFCITEPEKSWDMHEEMLANAEAFYQELGLPYRVVSIVSGALNNAAAKKYDLEGWFPGYGTYRELVSCSNCTDYQSRDLEIRCGTKKAGQTQKKYVHMLNSTLAATTRVICCILENYQTDKGINVPKALVPYLGMDFLPFVK 438          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: I3TA49_LOTJA (Serine--tRNA ligase n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3TA49_LOTJA)

HSP 1 Score: 272 bits (695), Expect = 1.690e-89
Identity = 132/209 (63.16%), Postives = 156/209 (74.64%), Query Frame = 1
Query:   34 DDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGE--SWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVG-KEFIPFTRMP 651
            DDKYLIAT+EQP+C +HL + +  +++P RYAG+SSCFRKEAGS GRD  GIFRVHQFEK+EQFC+T P +  SWDMH+EM   +  FYK L IPY VV IVS  LN AAA+K DLE WFPA+  YRELVSCSNCTDYQAR +E R+   K  +  K Y H LNSTL AT RTIC ILEN+Q  +G+ +PEAL PY+G K FIPF   P
Sbjct:   22 DDKYLIATAEQPLCAYHLDDWIHPSQLPIRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCLTSPNDNDSWDMHEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCTDYQARRLEIRYGQRKSNEQLKQYVHLLNSTLTATERTICCILENNQKDDGVEIPEALRPYMGGKSFIPFKNQP 230          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: L8GI72_ACACA (Serine--tRNA ligase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GI72_ACACA)

HSP 1 Score: 278 bits (711), Expect = 6.210e-89
Identity = 135/205 (65.85%), Postives = 162/205 (79.02%), Query Frame = 1
Query:   34 DDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVGK-EFIPFTR 645
            D+KYLIATSEQP+  FH +E L   ++P RYAG SSCFRKEAG+ G+D  GIFRVHQFEKIEQFC+T P +SW+ H+ M  TA AFY++L +PYHVV IVS ELN+AAA+KLDLE WFPA GE+RELVS SNCTDYQ+R++E R    K+  GEK Y H LN+TLCATTRTIC ILEN+QT EG+ VP+ L PY+G  EFIPF +
Sbjct:  233 DEKYLIATSEQPISAFHAEEWLEPKDLPIRYAGTSSCFRKEAGAHGKDTWGIFRVHQFEKIEQFCLTEPEKSWEEHENMVKTAEAFYQSLELPYHVVAIVSGELNNAAAKKLDLEAWFPAFGEFRELVSASNCTDYQSRSLEVRCGSRKQ-GGEKKYVHMLNATLCATTRTICCILENYQTPEGVAVPKVLQPYLGGLEFIPFVK 436          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: A0A7S0BR21_9RHOD (Serine--tRNA ligase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BR21_9RHOD)

HSP 1 Score: 270 bits (691), Expect = 7.830e-89
Identity = 131/212 (61.79%), Postives = 162/212 (76.42%), Query Frame = 1
Query:   28 GADDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRP--GESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEV-KGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVG-KEFIPFTRMP 651
            G  +KYLIATSEQP+  +H+ + +    +PK+Y G+S+CFRKEAGS GRD  GIFRVHQFEKIEQFC+T P   ESWD H++M   +  F+++LGIPY VV IVS  LN+AAA+KLDLEGW+PA   YRELVSCSNCTDYQ+R ++TRF  NK   +GEK + H LNSTLCATTR ICAILENHQT +G+ +PE L  Y+G KE + F+R P
Sbjct:   22 GVTEKYLIATSEQPIAAYHVDDWVDPKTLPKKYVGYSTCFRKEAGSHGRDTLGIFRVHQFEKIEQFCLTSPDDNESWDAHEDMIKASEEFHQSLGIPYRVVSIVSGALNNAAAKKLDLEGWYPAGSAYRELVSCSNCTDYQSRRLQTRFGSNKRGDQGEKKFVHMLNSTLCATTRVICAILENHQTDKGVVIPEPLRVYMGGKELMEFSRAP 233          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: F0ZTM5_DICPU (Serine--tRNA ligase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZTM5_DICPU)

HSP 1 Score: 277 bits (709), Expect = 7.870e-89
Identity = 138/215 (64.19%), Postives = 160/215 (74.42%), Query Frame = 1
Query:    1 GGKGEEEEDGADDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVGKEFIPFTR 645
            G  GEE E     KYLIATSEQP+  FH  E L E E+PKRY G+S+CFRKEAGSSGRD  GIFRVHQFEKIEQFCVT P +SWDM +EM   +  FY+ LGIPY VV+IVS  LN+AA++K DLEGWFP    YRELVSCSNCTDYQ+R +E R    K+ + +K Y H LNSTL ATTR IC ILEN+QT  GI VPE L P++GK+FIPF +
Sbjct:  227 GAAGEENE-----KYLIATSEQPISAFHRGEWLDEKELPKRYVGYSTCFRKEAGSSGRDTWGIFRVHQFEKIEQFCVTEPEKSWDMMEEMISNSEQFYQELGIPYRVVNIVSGALNNAASKKYDLEGWFPGYNTYRELVSCSNCTDYQSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGITVPEPLRPFLGKDFIPFVK 436          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: UPI000D62E803 (serine--tRNA ligase-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D62E803)

HSP 1 Score: 270 bits (689), Expect = 1.930e-88
Identity = 125/209 (59.81%), Postives = 156/209 (74.64%), Query Frame = 1
Query:   34 DDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPG--ESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVG-KEFIPFTRMP 651
            DDKYLIAT+EQP+C +H+ + +   ++P RYAG+SSCFRKEAGS GRD  GIFRVHQFEK+EQFC+T P   +SW+MH+EM   +  FY+ L +PYH+V IVS  LN AAA+K DLE WFPA+  YRELVSCSNCTDYQ+R +E RF   K  +  K YCH LNSTL AT RT+C ILEN+Q  +G+ +PE L P++G K F+PF   P
Sbjct:   27 DDKYLIATAEQPLCAYHIDDWIHPTQLPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNDSWEMHEEMIKNSEEFYQMLKLPYHIVSIVSGALNDAAAKKYDLEAWFPASSTYRELVSCSNCTDYQSRKLEIRFGQKKSNEQMKQYCHLLNSTLTATERTMCCILENYQREDGVEIPEVLQPFMGGKTFMPFQAPP 235          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: A0A8K0MQK5_9ROSA (Uncharacterized protein n=2 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MQK5_9ROSA)

HSP 1 Score: 275 bits (704), Expect = 5.000e-88
Identity = 132/209 (63.16%), Postives = 160/209 (76.56%), Query Frame = 1
Query:   34 DDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPG--ESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVG-KEFIPFTRMP 651
            DDKYLIAT+EQP+C +HL + +  +++P RYAG+SSCFRKEAGS GRD  GIFRVHQFEK+EQFC+T P   +SWDMH+EM   +  FYK L IPY VV IVS  LN AAA+K DLEGWFPA+  YRELVSCSNCTDYQ+R +E R+  NK+ +  KLY H LNSTL AT RTIC ILEN+Q  +G+ +PEAL P++G K F+PF   P
Sbjct:  228 DDKYLIATAEQPLCAYHLDDWIHPSQLPLRYAGYSSCFRKEAGSHGRDTLGIFRVHQFEKVEQFCLTSPNGNDSWDMHEEMIKNSEDFYKMLNIPYQVVAIVSGALNDAAAKKYDLEGWFPASQTYRELVSCSNCTDYQSRRLEIRYGQNKKNEQTKLYVHLLNSTLTATERTICCILENNQKEDGVEIPEALRPFMGGKTFLPFKSKP 436          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: A0A0G4ERX4_VITBC (Serine--tRNA ligase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERX4_VITBC)

HSP 1 Score: 275 bits (703), Expect = 1.790e-87
Identity = 132/211 (62.56%), Postives = 158/211 (74.88%), Query Frame = 1
Query:   10 GEEEEDGADDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVG-KEFIPF 639
            GE+E DG  D +LIATSEQP+  FH  + LR  E PKRYAG S+CFRKEAGSSG+D+ GIFRVHQFEK+EQFC+T P ESW MH+EM   A  FY++L +PY V+ IVS  LN AAA+K DLE WFP    YRELVSCSNCTDYQAR +E R    K  + EK YCH LN+TL A+ RT+C ILEN+QT  G+RVP  L+PY+G +EF+PF
Sbjct:  238 GEKESDGTPDMFLIATSEQPISAFHRGDWLRPDECPKRYAGVSTCFRKEAGSSGKDMWGIFRVHQFEKVEQFCITSPEESWAMHEEMIGIAEEFYQSLELPYQVIAIVSGALNDAAAKKYDLEAWFPGYETYRELVSCSNCTDYQARQLEVRHGQKKSGEREKKYCHMLNATLVASQRTMCCILENYQTPTGVRVPRVLIPYMGGEEFLPF 448          
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Match: A0A8J4Q5C8_9MYCE (Serine--tRNA ligase n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q5C8_9MYCE)

HSP 1 Score: 273 bits (699), Expect = 2.680e-87
Identity = 135/214 (63.08%), Postives = 161/214 (75.23%), Query Frame = 1
Query:    4 GKGEEEEDGADDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFRKEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKALGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQARAVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPEALVPYVGKEFIPFTR 645
            G+GE+ E     KYLIATSEQP+  +H +E + E E+PK+YAG+S+ FRKEAGSSG+D  GIFRVHQFEKIEQFC+T P +SWDM  EM   A AFY+ LG+PY VV+IVS  LN+AAARK DLE WFP   EYRELVSCSNCTDYQ+R +E R    K+ + +K Y H LNSTL ATTR IC ILEN+QT  GI VP  L PY+G +FIPFT+
Sbjct:  226 GEGEDNE-----KYLIATSEQPISAYHRREWIEEKELPKKYAGYSTNFRKEAGSSGKDNWGIFRVHQFEKIEQFCITEPEKSWDMQDEMLGNAEAFYQELGLPYRVVNIVSGALNNAAARKYDLECWFPGYNEYRELVSCSNCTDYQSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGINVPTPLRPYLGMDFIPFTK 434          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100115.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E5A5_CAFRO1.010e-9167.14Serine--tRNA ligase n=1 Tax=Cafeteria roenbergensi... [more]
A0A152A6B6_9MYCE3.670e-9065.02Serine--tRNA ligase n=1 Tax=Tieghemostelium lacteu... [more]
I3TA49_LOTJA1.690e-8963.16Serine--tRNA ligase n=1 Tax=Lotus japonicus TaxID=... [more]
L8GI72_ACACA6.210e-8965.85Serine--tRNA ligase n=1 Tax=Acanthamoeba castellan... [more]
A0A7S0BR21_9RHOD7.830e-8961.79Serine--tRNA ligase n=1 Tax=Rhodosorus marinus Tax... [more]
F0ZTM5_DICPU7.870e-8964.19Serine--tRNA ligase n=1 Tax=Dictyostelium purpureu... [more]
UPI000D62E8031.930e-8859.81serine--tRNA ligase-like n=1 Tax=Cynara cardunculu... [more]
A0A8K0MQK5_9ROSA5.000e-8863.16Uncharacterized protein n=2 Tax=Rhamnella rubriner... [more]
A0A0G4ERX4_VITBC1.790e-8762.56Serine--tRNA ligase n=1 Tax=Vitrella brassicaformi... [more]
A0A8J4Q5C8_9MYCE2.680e-8763.08Serine--tRNA ligase n=1 Tax=Polysphondylium violac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100115contigM-pyrifera_M_contig100115:8..661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score282.0
Seed ortholog evalue2.4e-73
Seed eggNOG ortholog3750.XP_008388577.1
KEGG rclassRC00055,RC00523
KEGG koko:K01875
KEGG ReactionR03662,R08218
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004828,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006434,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010035,GO:0010038,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0042221,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046686,GO:0050896,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Serine--tRNA
EggNOG OGs37IH8@33090,3G7DD@35493,4JN3G@91835,COG0172@1,KOG2509@2759
Ec32 ortholog descriptionSeryl-tRNA synthetase
Ec32 orthologEc-24_004300.1
EC6.1.1.11
COG Functional cat.J
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size654
Cds size654
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.836527-CDS-M-pyrifera_M_contig100115:7..6611622815495.836527-CDS-M-pyrifera_M_contig100115:7..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100115 8..661 -
1692277437.9780087-CDS-M-pyrifera_M_contig100115:7..6611692277437.9780087-CDS-M-pyrifera_M_contig100115:7..661Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100115 8..661 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100115.27.1prot_M-pyrifera_M_contig100115.27.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100115 8..661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100115.27.1

>prot_M-pyrifera_M_contig100115.27.1 ID=prot_M-pyrifera_M_contig100115.27.1|Name=mRNA_M-pyrifera_M_contig100115.27.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=218bp
GGKGEEEEDGADDKYLIATSEQPVCLFHLKESLREAEVPKRYAGWSSCFR
KEAGSSGRDLKGIFRVHQFEKIEQFCVTRPGESWDMHKEMSDTAAAFYKA
LGIPYHVVDIVSVELNSAAARKLDLEGWFPAAGEYRELVSCSNCTDYQAR
AVETRFIPNKEVKGEKLYCHFLNSTLCATTRTICAILENHQTAEGIRVPE
ALVPYVGKEFIPFTRMPV
back to top

mRNA from alignment at M-pyrifera_M_contig100115:8..661-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100115.27.1 ID=mRNA_M-pyrifera_M_contig100115.27.1|Name=mRNA_M-pyrifera_M_contig100115.27.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig100115:8..661- (Macrocystis pyrifera P11B4 male)
GGAGGGAAAGGGGAGGAGGAGGAGGATGGGGCGGATGACAAGTACCTCAT TGCCACTTCGGAACAACCCGTGTGTCTCTTCCACCTCAAGGAGTCGCTGC GTGAAGCAGAGGTGCCCAAGCGCTATGCCGGGTGGTCTTCTTGCTTCCGG AAAGAGGCAGGGTCGTCTGGCCGCGACTTGAAGGGCATTTTCAGAGTGCA CCAGTTTGAGAAGATTGAGCAGTTTTGCGTGACTCGCCCTGGAGAATCGT GGGACATGCACAAGGAAATGAGCGACACGGCTGCTGCCTTCTACAAGGCT CTGGGAATTCCGTACCACGTGGTGGACATTGTCTCCGTGGAACTCAACAG CGCAGCAGCACGGAAACTGGATTTGGAAGGGTGGTTCCCAGCTGCTGGTG AATACCGTGAACTCGTCAGCTGCTCCAACTGCACAGACTACCAAGCCCGA GCTGTGGAGACGCGGTTCATTCCCAACAAGGAAGTCAAGGGCGAGAAGCT CTACTGCCACTTCCTCAACTCCACCCTCTGTGCCACCACACGCACCATCT GCGCCATCCTCGAAAACCACCAAACCGCCGAAGGCATCCGGGTTCCAGAA GCACTCGTGCCCTACGTCGGCAAAGAGTTCATCCCATTCACCAGAATGCC AGTC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig100115:8..661-

>mRNA_M-pyrifera_M_contig100115.27.1 ID=mRNA_M-pyrifera_M_contig100115.27.1|Name=mRNA_M-pyrifera_M_contig100115.27.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1308bp|location=Sequence derived from alignment at M-pyrifera_M_contig100115:8..661- (Macrocystis pyrifera P11B4 male)
GGAGGGAAAGGGGAGGAGGAGGAGGATGGGGCGGATGACAAGTACCTCAT
TGCCACTTCGGAACAACCCGTGTGTCTCTTCCACCTCAAGGAGTCGCTGC
GTGAAGCAGAGGTGCCCAAGCGCTATGCCGGGTGGTCTTCTTGCTTCCGG
AAAGAGGCAGGGTCGTCTGGCCGCGACTTGAAGGGCATTTTCAGAGTGCA
CCAGTTTGAGAAGATTGAGCAGTTTTGCGTGACTCGCCCTGGAGAATCGT
GGGACATGCACAAGGAAATGAGCGACACGGCTGCTGCCTTCTACAAGGCT
CTGGGAATTCCGTACCACGTGGTGGACATTGTCTCCGTGGAACTCAACAG
CGCAGCAGCACGGAAACTGGATTTGGAAGGGTGGTTCCCAGCTGCTGGTG
AATACCGTGAACTCGTCAGCTGCTCCAACTGCACAGACTACCAAGCCCGA
GCTGTGGAGACGCGGTTCATTCCCAACAAGGAAGTCAAGGGCGAGAAGCT
CTACTGCCACTTCCTCAACTCCACCCTCTGTGCCACCACACGCACCATCT
GCGCCATCCTCGAAAACCACCAAACCGCCGAAGGCATCCGGGTTCCAGAA
GCACTCGTGCCCTACGTCGGCAAAGAGTTCATCCCATTCACCAGAATGCC
AGTCGGAGGGAAAGGGGAGGAGGAGGAGGATGGGGCGGATGACAAGTACC
TCATTGCCACTTCGGAACAACCCGTGTGTCTCTTCCACCTCAAGGAGTCG
CTGCGTGAAGCAGAGGTGCCCAAGCGCTATGCCGGGTGGTCTTCTTGCTT
CCGGAAAGAGGCAGGGTCGTCTGGCCGCGACTTGAAGGGCATTTTCAGAG
TGCACCAGTTTGAGAAGATTGAGCAGTTTTGCGTGACTCGCCCTGGAGAA
TCGTGGGACATGCACAAGGAAATGAGCGACACGGCTGCTGCCTTCTACAA
GGCTCTGGGAATTCCGTACCACGTGGTGGACATTGTCTCCGTGGAACTCA
ACAGCGCAGCAGCACGGAAACTGGATTTGGAAGGGTGGTTCCCAGCTGCT
GGTGAATACCGTGAACTCGTCAGCTGCTCCAACTGCACAGACTACCAAGC
CCGAGCTGTGGAGACGCGGTTCATTCCCAACAAGGAAGTCAAGGGCGAGA
AGCTCTACTGCCACTTCCTCAACTCCACCCTCTGTGCCACCACACGCACC
ATCTGCGCCATCCTCGAAAACCACCAAACCGCCGAAGGCATCCGGGTTCC
AGAAGCACTCGTGCCCTACGTCGGCAAAGAGTTCATCCCATTCACCAGAA
TGCCAGTC
back to top