mRNA_M-pyrifera_M_contig112958.2696.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A358A1H5_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A1H5_9ACTN) HSP 1 Score: 181 bits (459), Expect = 1.390e-54 Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
L+ IM + ANISWT +FL +L+ M F LG+GFIV+V NARYRD QYLIG+L+ V FFLVPIVY P LLDRD VP++ R LV WNPPALFVEIARD YFL+ P LL +AAWA+ TF +GW YFR +SM ISEEP
Sbjct: 132 LLVIMALFANISWTAVFLVFSLLLTMAFALGIGFIVAVLNARYRDIQYLIGVLIGVGFFLVPIVYPPSLLDRDDVPEIGRQLVTWNPPALFVEIARDGVYFLQTPDPLKLLVAAAWAVGTFTVGWFYFRARSMEISEEP 270
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A6B1AWC8_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWC8_9ACTN) HSP 1 Score: 173 bits (439), Expect = 1.980e-51 Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
L+ IM L+NISWT++FL VA+ FIVSV NARYRD +YL GILLNV+FF VPIVYTP+LL ++ +P++AR+ V+WNP ALF+EI+RDA YFL+VP WN LA+ W++ TF IGWV+FR QSM+ISEEP
Sbjct: 143 LVVIMTALSNISWTLVFLPVAMXXXXXXXXXXXFIVSVLNARYRDVKYLSGILLNVAFFAVPIVYTPELLKKEQIPEIARLFVEWNPVALFIEISRDAAYFLQVPLWNRFLAAVVWSVTTFVIGWVFFRRQSMSISEEP 281
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A2D6UAL4_9ACTN (Transport permease protein n=4 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6UAL4_9ACTN) HSP 1 Score: 172 bits (435), Expect = 5.840e-51 Identity = 83/138 (60.14%), Postives = 105/138 (76.09%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
L+ IM + NISWT +FL AL+ MMF LG+GFIV+V N+RYRD QYL G+L+ V FFLVP+VY P LL+ + VP++AR LV WNPPA+FVEIARD YFL+ P +L + AWA+ TFA+GW+YFR +SM ISEE
Sbjct: 132 LLVIMALFTNISWTALFLVFALLLTMMFALGIGFIVAVLNSRYRDIQYLTGVLIGVGFFLVPVVYPPSLLEHNDVPEIARQLVTWNPPAIFVEIARDGVYFLQTPDPLXVLVATAWAVGTFAVGWLYFRSRSMEISEE 269
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A2E0SYM4_9ACTN (ABC2_membrane domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SYM4_9ACTN) HSP 1 Score: 165 bits (418), Expect = 1.590e-45 Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
L+ IM + NISWT +F AL+ MMF LG+GFIV+V N+RYRD QYL G+L+ V FFLVP+VY P LL+ + VP +AR LV WNPPA+FVE ARD YFL+ P +L + AWA+ TFA GW+YFR +SM ISEE
Sbjct: 465 LLVIMALFTNISWTALFXVFALLLTMMFALGIGFIVAVLNSRYRDIQYLTGVLIGVGFFLVPVVYPPSLLEXNDVPXIARQLVTWNPPAIFVEXARDGVYFLQTPDPLRVLVATAWAVGTFAXGWLYFRSRSMEISEE 602
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A3M2GIJ2_ACTSX (Transport permease protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GIJ2_ACTSX) HSP 1 Score: 142 bits (357), Expect = 3.480e-39 Identity = 78/141 (55.32%), Postives = 101/141 (71.63%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
L+AIM+ L N+SWTV+FL +ALV V +F LG+GF+V++ NARYRD QYL GI LNV FF VPIV+TP ++ G+P + RI ++ NP FV ARDA YFLEVP ++A AW++ +F GW YFR +SM ISEEP
Sbjct: 135 LVAIMVALLNVSWTVVFLPLALVSVAVFALGIGFVVAILNARYRDVQYLTGIALNVWFFSVPIVFTPAIVPERAYGLP-VGRI-IELNPLTQFVGFARDAVYFLEVPSLGRIVAVVAWSVASFVPGWWYFRRKSMEISEEP 273
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A6B1EE92_9ACTN (Transport permease protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EE92_9ACTN) HSP 1 Score: 138 bits (348), Expect = 1.070e-37 Identity = 81/141 (57.45%), Postives = 104/141 (73.76%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLL-DRD-GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEEP 417
L+ IM VLAN+SWT++FL VA++ MF LG+GF ++ NARYRD Q+L I+L+V FF+VPIVYTPD++ DR G+P +ARI V+ NP + +ARDA YFLE P L +AAWAI TFAIG +FR +SMAISEEP
Sbjct: 148 LVLIMTVLANVSWTLVFLPVAMLLAAMFALGLGFAAAIVNARYRDIQHLTTIVLSVGFFMVPIVYTPDIVPDRAYGLP-VARI-VELNPLNSVIAVARDAVYFLETPDLADLATAAAWAIGTFAIGLAFFRRRSMAISEEP 286
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A800LQ96_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800LQ96_9ACTN) HSP 1 Score: 115 bits (288), Expect = 8.890e-29 Identity = 60/129 (46.51%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 28 NISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRDGVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
N+ WT++ L V L+F MFGLG+G ++SVFN RYRD + LI ILL+ FFLVPIVYT D++ + A L+ NP + FV ARD YFLE P + A +A + +GW + +SMA+SEE
Sbjct: 155 NLGWTIVLLPVVLLFTAMFGLGIGMVMSVFNTRYRDVENLIVILLSTMFFLVPIVYTEDIIPEEAYGLPAAALIGANPISQFVGTARDVVYFLEWPSLARMSLLAVYAFGSLGVGWWFLNRRSMALSEE 283
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A2E1WMJ6_9ACTN (Transport permease protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E1WMJ6_9ACTN) HSP 1 Score: 111 bits (277), Expect = 3.080e-27 Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
L+ +M++L N+ + L + L +FGLGVGF V V N YRD QYL+GI++N FFLVPIVY D++ + G+P R +V+WNP FV ARD+ Y +E P + LA ++ TFA+GW +F +SM +SE+
Sbjct: 136 LLLVMVLLGNVGLPTLLLPIVLALAGLFGLGVGFFVCVLNTHYRDVQYLVGIVINAVFFLVPIVYPIDIIPQHHWGLP--IRKIVEWNPINQFVAAARDSAYLVEWPSASRWLALVIYSTATFALGWRFFARRSMRLSED 273
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A1Z9JQP1_9ACTN (Transport permease protein n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A1Z9JQP1_9ACTN) HSP 1 Score: 109 bits (273), Expect = 1.390e-26 Identity = 59/140 (42.14%), Postives = 87/140 (62.14%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
LI +MI++AN+ T + L + LV +FGLG+GF V V N YRD QYL+GI+LN FFLVPIVY ++ G+P R ++++NP FV AR++ Y LE WN +++ +F +GW +F +SM +SE+
Sbjct: 143 LILVMILIANVGLTTLVLPIILVLAGLFGLGIGFFVCVLNTHYRDVQYLVGIILNALFFLVPIVYPISIIPEAHWGIP--IRKMIEYNPVNQFVAAARESAYLLEWSSWNRWALIIFYSVASFTLGWRFFNKRSMQLSED 280
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Match: A0A7C7XQR1_9ACTN (Transport permease protein n=6 Tax=root TaxID=1 RepID=A0A7C7XQR1_9ACTN) HSP 1 Score: 107 bits (268), Expect = 1.170e-25 Identity = 59/140 (42.14%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 1 LIAIMIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLNVSFFLVPIVYTPDLLDRD--GVPDLARILVKWNPPALFVEIARDATYFLEVPQWNHLLASAAWAIITFAIGWVYFRDQSMAISEE 414
L+ +M +L N+ + L V L+ +FGLG+GF V V N YRD QYL+GI++N FFLVPIVY D++ G+P R +V+WNP FV ARD+ Y +E P LA ++ + F +GW +F +SM +SE+
Sbjct: 166 LLLVMALLGNVGLPTLVLPVVLLLAGLFGLGIGFFVCVLNTHYRDVQYLVGIIINAVFFLVPIVYPIDIIPERHWGLP--VRKIVEWNPINQFVAAARDSAYLVEWPSATRWLALVGYSTVAFGLGWRFFARRSMQLSED 303 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112958.2696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112958.2696.1 >prot_M-pyrifera_M_contig112958.2696.1 ID=prot_M-pyrifera_M_contig112958.2696.1|Name=mRNA_M-pyrifera_M_contig112958.2696.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp MIVLANISWTVIFLFVALVFVMMFGLGVGFIVSVFNARYRDTQYLIGILLback to top mRNA from alignment at M-pyrifera_M_contig112958:162..581- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112958.2696.1 ID=mRNA_M-pyrifera_M_contig112958.2696.1|Name=mRNA_M-pyrifera_M_contig112958.2696.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig112958:162..581- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112958:162..581- >mRNA_M-pyrifera_M_contig112958.2696.1 ID=mRNA_M-pyrifera_M_contig112958.2696.1|Name=mRNA_M-pyrifera_M_contig112958.2696.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig112958:162..581- (Macrocystis pyrifera P11B4 male)back to top |