mRNA_M-pyrifera_M_contig112951.2694.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112951.2694.1
Unique NamemRNA_M-pyrifera_M_contig112951.2694.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7S3DN11_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DN11_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.150e-11
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLL 105
            ++FDHFCPWV NAVGA NHKFF LF+ Y  + CLL
Sbjct:   60 VKFDHFCPWVGNAVGALNHKFFCLFLLYTAITCLL 94          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7S1Y5B7_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y5B7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 8.450e-11
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLL 105
            ++ DHFCPWV NAVGA NHKFFVLF+ Y  L+CLL
Sbjct:  152 VKMDHFCPWVCNAVGALNHKFFVLFIFYTLLSCLL 186          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7S2Y8H8_9STRA (Palmitoyltransferase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y8H8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.620e-9
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLLVTIASIEAATH 138
            ++FDHFCPWV NAVGA NHKFF LF+ Y  + C+L  +  +  A H
Sbjct:   60 VKFDHFCPWVGNAVGALNHKFFCLFLLYTAITCVLSMLLLLLRALH 105          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A6B2LFU5_9EUKA (Palmitoyltransferase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LFU5_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 2.100e-9
Identity = 21/32 (65.62%), Postives = 28/32 (87.50%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLA 96
            LR+DHFCPW+ANAVG +NHK+F+L + YA +A
Sbjct:   70 LRYDHFCPWIANAVGLQNHKYFILLIIYAMIA 101          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7S1B7Z3_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B7Z3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.420e-9
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTY---AFLACLLV 108
            ++FDH+CPW+ NAVG RNHKFFVLFV Y   A + CLLV
Sbjct:  196 VKFDHYCPWINNAVGVRNHKFFVLFVAYVATAAVGCLLV 234          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7J7ID45_9RHOD (Palmitoyltransferase n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ID45_9RHOD)

HSP 1 Score: 58.9 bits (141), Expect = 6.110e-9
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLLVTIASIEAATH 138
            L+ DH+CPW  N +G  NHKFFV F+ YAFLA L+  + S+ A  H
Sbjct:  188 LKMDHYCPWTNNTIGFYNHKFFVQFLYYAFLASLITAVISLPAILH 233          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: M1VAM4_CYAM1 (Palmitoyltransferase n=2 Tax=cellular organisms TaxID=131567 RepID=M1VAM4_CYAM1)

HSP 1 Score: 58.5 bits (140), Expect = 8.370e-9
Identity = 24/43 (55.81%), Postives = 29/43 (67.44%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLLVTIASIEA 129
            L+ DHFCPW  N VG  NHKFFV F+ Y F+ACL+  + S  A
Sbjct:  188 LKMDHFCPWTNNTVGFYNHKFFVQFLYYGFMACLVTAVLSFPA 230          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: M2X872_GALSU (Palmitoyltransferase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X872_GALSU)

HSP 1 Score: 58.2 bits (139), Expect = 1.080e-8
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLLVTIASI 123
            L+ DH CPW+ N VG  N KFF+LFV YAFL CL V++  +
Sbjct:  147 LKMDHHCPWINNCVGFYNQKFFILFVYYAFLGCLFVSVTGV 187          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7S2W6V2_9STRA (Palmitoyltransferase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6V2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.120e-8
Identity = 23/33 (69.70%), Postives = 26/33 (78.79%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLAC 99
            L+ DHFCPWV NAVG  NHKFF+LFV Y  L+C
Sbjct:  131 LKMDHFCPWVNNAVGLFNHKFFLLFVLYTMLSC 163          
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Match: A0A7S0CKC9_9STRA (Palmitoyltransferase n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKC9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.870e-8
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:    1 LRFDHFCPWVANAVGARNHKFFVLFVTYAFLA 96
            ++ DHFCPWV NA+GA NHK FVLF+ Y FL+
Sbjct:   37 VKMDHFCPWVCNAIGAMNHKHFVLFILYTFLS 68          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112951.2694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3DN11_9STRA7.150e-1168.57Palmitoyltransferase (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S1Y5B7_9STRA8.450e-1171.43Palmitoyltransferase (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S2Y8H8_9STRA1.620e-954.35Palmitoyltransferase n=1 Tax=Amphiprora paludosa T... [more]
A0A6B2LFU5_9EUKA2.100e-965.63Palmitoyltransferase n=1 Tax=Arcella intermedia Ta... [more]
A0A7S1B7Z3_9STRA2.420e-966.67Palmitoyltransferase (Fragment) n=1 Tax=Corethron ... [more]
A0A7J7ID45_9RHOD6.110e-952.17Palmitoyltransferase n=1 Tax=Cyanidiococcus yangmi... [more]
M1VAM4_CYAM18.370e-955.81Palmitoyltransferase n=2 Tax=cellular organisms Ta... [more]
M2X872_GALSU1.080e-856.10Palmitoyltransferase n=1 Tax=Galdieria sulphuraria... [more]
A0A7S2W6V2_9STRA1.120e-869.70Palmitoyltransferase n=2 Tax=Rhizochromulina marin... [more]
A0A7S0CKC9_9STRA2.870e-865.63Palmitoyltransferase n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112951contigM-pyrifera_M_contig112951:443..580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.2320542-CDS-M-pyrifera_M_contig112951:442..5801622815643.2320542-CDS-M-pyrifera_M_contig112951:442..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112951 443..580 -
1692277501.812824-CDS-M-pyrifera_M_contig112951:442..5801692277501.812824-CDS-M-pyrifera_M_contig112951:442..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112951 443..580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112951.2694.1prot_M-pyrifera_M_contig112951.2694.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112951 443..580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112951.2694.1

>prot_M-pyrifera_M_contig112951.2694.1 ID=prot_M-pyrifera_M_contig112951.2694.1|Name=mRNA_M-pyrifera_M_contig112951.2694.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
LRFDHFCPWVANAVGARNHKFFVLFVTYAFLACLLVTIASIEAATH
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mRNA from alignment at M-pyrifera_M_contig112951:443..580-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112951.2694.1 ID=mRNA_M-pyrifera_M_contig112951.2694.1|Name=mRNA_M-pyrifera_M_contig112951.2694.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig112951:443..580- (Macrocystis pyrifera P11B4 male)
CTCCGGTTTGACCATTTTTGCCCCTGGGTAGCGAACGCTGTCGGTGCAAG AAACCACAAGTTCTTCGTCCTCTTCGTCACCTACGCCTTCCTCGCGTGCC TCCTCGTCACCATTGCATCCATCGAAGCTGCAACACAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112951:443..580-

>mRNA_M-pyrifera_M_contig112951.2694.1 ID=mRNA_M-pyrifera_M_contig112951.2694.1|Name=mRNA_M-pyrifera_M_contig112951.2694.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig112951:443..580- (Macrocystis pyrifera P11B4 male)
CTCCGGTTTGACCATTTTTGCCCCTGGGTAGCGAACGCTGTCGGTGCAAG
AAACCACAAGTTCTTCGTCCTCTTCGTCACCTACGCCTTCCTCGCGTGCC
TCCTCGTCACCATTGCATCCATCGAAGCTGCAACACACCTCCGGTTTGAC
CATTTTTGCCCCTGGGTAGCGAACGCTGTCGGTGCAAGAAACCACAAGTT
CTTCGTCCTCTTCGTCACCTACGCCTTCCTCGCGTGCCTCCTCGTCACCA
TTGCATCCATCGAAGCTGCAACACAC
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