mRNA_M-pyrifera_M_contig112949.2693.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112949.2693.1
Unique NamemRNA_M-pyrifera_M_contig112949.2693.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI00199341EA (Tim44 domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI00199341EA)

HSP 1 Score: 82.4 bits (202), Expect = 1.240e-18
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
            +L+AE+ ++ ++IT+KF S LI    G  GE++EGD K++  VTDIWTF+R  + RDPNWKLIATE+
Sbjct:   59 ILDAEMVSRNAQITLKFVSELISATRGKTGEVVEGDPKKVRDVTDIWTFSRDLSSRDPNWKLIATET 125          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI00199547A3 (Tim44 domain-containing protein n=1 Tax=Chitinophagales bacterium TaxID=2448779 RepID=UPI00199547A3)

HSP 1 Score: 82.4 bits (202), Expect = 1.370e-17
Identity = 36/67 (53.73%), Postives = 51/67 (76.12%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
            +L+AE+ ++ ++IT+KF S LI    G  GE++EGD K++  VTDIWTF+R  + RDPNWKLIATE+
Sbjct:  170 ILDAEMVSRNAQITLKFVSELISATRGKTGEVVEGDPKKVRDVTDIWTFSRDLSSRDPNWKLIATET 236          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI001EFC4EB3 (Tim44/TimA family putative adaptor protein n=2 Tax=Rhizobium TaxID=379 RepID=UPI001EFC4EB3)

HSP 1 Score: 80.9 bits (198), Expect = 4.730e-17
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 AEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
            A ++  + ++TV+  S LI   +  EG ++EGD++ +  VTDIWTFAR A  RDPNWKLIATESE
Sbjct:  166 ANVNGTEEQVTVRIVSQLISATFDKEGSLVEGDQENVADVTDIWTFARDARSRDPNWKLIATESE 230          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI00177FDBBF (Tim44/TimA family putative adaptor protein n=1 Tax=Agrobacterium sp. AGB01 TaxID=2769302 RepID=UPI00177FDBBF)

HSP 1 Score: 80.5 bits (197), Expect = 6.760e-17
Identity = 33/68 (48.53%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
            +L+A I +++ +ITV+  S LI   Y  +GE+++GD + + +V DIWTFAR    +DPNWKL+ATESE
Sbjct:  164 ILQASIRDEEEQITVRIASQLISATYNKDGELVDGDAEGVSEVNDIWTFARDVRSKDPNWKLVATESE 231          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: UPI001CFF98F9 (Tim44/TimA family putative adaptor protein n=1 Tax=Neorhizobium sp. T786 TaxID=2883104 RepID=UPI001CFF98F9)

HSP 1 Score: 79.7 bits (195), Expect = 1.310e-16
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 AEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
            A + + + +ITV+  S LI   Y  +G ++EGD++ + +VTDIWTFAR    RDPNWKL+ATESE
Sbjct:  166 ASVKDDEEQITVRIVSQLISATYDKDGGVVEGDQESVAEVTDIWTFARDVRSRDPNWKLVATESE 230          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A2N6AX99_9HYPH (Calcium-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6AX99_9HYPH)

HSP 1 Score: 79.7 bits (195), Expect = 1.520e-16
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
            +++AE+  +++ +TVKF S LI++V   +GEI++GD   + +V DIWTFAR    RDPNWKL+ATE+
Sbjct:  172 IMDAELQGREARVTVKFVSELIQSVRDKDGEIVDGDADMVREVIDIWTFARDTKSRDPNWKLVATET 238          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A2N6B4W1_9HYPH (Calcium-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2N6B4W1_9HYPH)

HSP 1 Score: 79.7 bits (195), Expect = 1.590e-16
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
            ++EA + +  +++TV+FKS LI     SEG II+GD  +++ VTDIWTFAR    RDPNWKL+ATE+
Sbjct:  175 IVEAALRDGTAQVTVRFKSQLISVTRDSEGRIIDGDPNKLEDVTDIWTFAREVASRDPNWKLVATET 241          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A7C2RCT6_9HYPH (Tim44/TimA family putative adaptor protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2RCT6_9HYPH)

HSP 1 Score: 79.7 bits (195), Expect = 1.640e-16
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATES 201
            ++EAE+ ++ + +TVKF S LI       GE+I GD K I +VTDIWTFAR  + RDPNWKLIAT++
Sbjct:  177 IVEAELKSRVAHLTVKFVSELISATRDKTGEVISGDPKRIREVTDIWTFAREVDSRDPNWKLIATQA 243          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: B9JXU6_AGRVS (Membrane associated transporter protein n=19 Tax=Agrobacterium vitis TaxID=373 RepID=B9JXU6_AGRVS)

HSP 1 Score: 79.3 bits (194), Expect = 1.870e-16
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:   10 AEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESE 204
            AE+ +++ +ITV+  S LI   Y S+G +IEGD + +  V DIWTFAR    RDPNWKLIATES+
Sbjct:  167 AEVRDQEVQITVRLVSQLISATYDSQGAVIEGDAESVGDVNDIWTFARDTRSRDPNWKLIATESD 231          
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Match: A0A657LVI5_9HYPH (Calcium-binding protein n=1 Tax=Pararhizobium antarcticum TaxID=1798805 RepID=A0A657LVI5_9HYPH)

HSP 1 Score: 79.3 bits (194), Expect = 1.930e-16
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFARAANGRDPNWKLIATESES 207
            M+ AE+ + ++ ITV+  S LI   Y   G II+GD + + +V D+WTFAR    RDPNWKLIATESE+
Sbjct:  166 MVHAEVKDSEANITVRIISQLISATYDKAGTIIDGDAEAVSEVNDLWTFARDTRSRDPNWKLIATESEN 234          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112949.2693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00199341EA1.240e-1853.73Tim44 domain-containing protein n=1 Tax=Chitinopha... [more]
UPI00199547A31.370e-1753.73Tim44 domain-containing protein n=1 Tax=Chitinopha... [more]
UPI001EFC4EB34.730e-1752.31Tim44/TimA family putative adaptor protein n=2 Tax... [more]
UPI00177FDBBF6.760e-1748.53Tim44/TimA family putative adaptor protein n=1 Tax... [more]
UPI001CFF98F91.310e-1650.77Tim44/TimA family putative adaptor protein n=1 Tax... [more]
A0A2N6AX99_9HYPH1.520e-1649.25Calcium-binding protein n=1 Tax=Hyphomicrobiales b... [more]
A0A2N6B4W1_9HYPH1.590e-1652.24Calcium-binding protein n=1 Tax=Hyphomicrobiales b... [more]
A0A7C2RCT6_9HYPH1.640e-1653.73Tim44/TimA family putative adaptor protein n=1 Tax... [more]
B9JXU6_AGRVS1.870e-1653.85Membrane associated transporter protein n=19 Tax=A... [more]
A0A657LVI5_9HYPH1.930e-1650.72Calcium-binding protein n=1 Tax=Pararhizobium anta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112949contigM-pyrifera_M_contig112949:368..577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.0
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog1122214.AQWH01000012_gene3770
Preferred nameMA20_24770
KEGG koko:K15539
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tim44
EggNOG OGs1NCIX@1224,2PJRZ@255475,2TTDQ@28211,COG4395@1,COG4395@2
COG Functional cat.S
Best tax levelAurantimonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815643.189165-CDS-M-pyrifera_M_contig112949:367..5771622815643.189165-CDS-M-pyrifera_M_contig112949:367..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112949 368..577 -
1692277501.8013604-CDS-M-pyrifera_M_contig112949:367..5771692277501.8013604-CDS-M-pyrifera_M_contig112949:367..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112949 368..577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112949.2693.1prot_M-pyrifera_M_contig112949.2693.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112949 368..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112949.2693.1

>prot_M-pyrifera_M_contig112949.2693.1 ID=prot_M-pyrifera_M_contig112949.2693.1|Name=mRNA_M-pyrifera_M_contig112949.2693.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
MLEAEIDNKQSEITVKFKSSLIRTVYGSEGEIIEGDEKEIDKVTDIWTFA
RAANGRDPNWKLIATESES*
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mRNA from alignment at M-pyrifera_M_contig112949:368..577-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112949.2693.1 ID=mRNA_M-pyrifera_M_contig112949.2693.1|Name=mRNA_M-pyrifera_M_contig112949.2693.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig112949:368..577- (Macrocystis pyrifera P11B4 male)
ATGCTGGAAGCTGAAATTGATAATAAACAATCAGAAATTACAGTGAAGTT TAAGTCGTCTCTTATCAGAACAGTCTATGGCTCTGAAGGTGAAATCATTG AAGGTGACGAAAAAGAAATAGATAAAGTCACAGATATTTGGACATTTGCT CGCGCTGCAAATGGCCGCGATCCAAACTGGAAATTGATCGCAACTGAATC AGAATCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112949:368..577-

>mRNA_M-pyrifera_M_contig112949.2693.1 ID=mRNA_M-pyrifera_M_contig112949.2693.1|Name=mRNA_M-pyrifera_M_contig112949.2693.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig112949:368..577- (Macrocystis pyrifera P11B4 male)
ATGCTGGAAGCTGAAATTGATAATAAACAATCAGAAATTACAGTGAAGTT
TAAGTCGTCTCTTATCAGAACAGTCTATGGCTCTGAAGGTGAAATCATTG
AAGGTGACGAAAAAGAAATAGATAAAGTCACAGATATTTGGACATTTGCT
CGCGCTGCAAATGGCCGCGATCCAAACTGGAAATTGATCGCAACTGAATC
AGAATCATAAATGCTGGAAGCTGAAATTGATAATAAACAATCAGAAATTA
CAGTGAAGTTTAAGTCGTCTCTTATCAGAACAGTCTATGGCTCTGAAGGT
GAAATCATTGAAGGTGACGAAAAAGAAATAGATAAAGTCACAGATATTTG
GACATTTGCTCGCGCTGCAAATGGCCGCGATCCAAACTGGAAATTGATCG
CAACTGAATCAGAATCATAA
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