mRNA_M-pyrifera_M_contig112927.2687.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112927.2687.1
Unique NamemRNA_M-pyrifera_M_contig112927.2687.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A518IP59_9BACT (Uncharacterized protein n=4 Tax=Rosistilla TaxID=2795779 RepID=A0A518IP59_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 3.930e-24
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR 138
            LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR
Sbjct:   76 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR 121          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A517MKU9_9BACT (Uncharacterized protein n=1 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MKU9_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 2.600e-11
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYR 135
            LD  +V +R TL+SRGFERL +I A G + D+T YPLPEAIAKYR
Sbjct:   76 LDEAFVNERRTLISRGFERLLQIAATGGDRDVTQYPLPEAIAKYR 120          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A7Y2AKJ0_9BACT (Uncharacterized protein n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2AKJ0_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 2.420e-10
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR 138
            LDP+YVQ+R++LV+RG+ RL EI +   + D+T+YPLPEAI KY++
Sbjct:   76 LDPQYVQERQSLVTRGYARLLEIASTQGDRDVTAYPLPEAIQKYQK 121          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: M5RJM8_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 RepID=M5RJM8_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 3.430e-10
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR 138
            LDP++V +R  L++RG+ERLREI A   + D+TSYPLPE I +YR+
Sbjct:   76 LDPDFVAERVALITRGYERLREIAASEGDRDVTSYPLPEVIDRYRQ 121          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A1Z9QW46_9PLAN (Uncharacterized protein n=5 Tax=Planctomycetia TaxID=203683 RepID=A0A1Z9QW46_9PLAN)

HSP 1 Score: 58.2 bits (139), Expect = 1.400e-9
Identity = 27/46 (58.70%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR 138
            LDPE+V++R  LV+RG+ RL+EI A   +GD+T YPL EAI +YRR
Sbjct:   76 LDPEFVEKRINLVTRGYLRLQEIAASQHDGDVTRYPLAEAIDRYRR 121          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A5C6E2U9_9BACT (Uncharacterized protein n=1 Tax=Novipirellula aureliae TaxID=2527966 RepID=A0A5C6E2U9_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-9
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYR 135
            LD E+V QR  LV+RG+ERLREI AE    D+T+YPLP+ I +YR
Sbjct:   76 LDTEFVSQRSKLVTRGYERLREIAAEEGVRDVTAYPLPDVIDRYR 120          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A517NNZ8_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NNZ8_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.880e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR 138
            LD +YVQ R+ LVSRG+ RL EI A   + D+T+YPLPEAI KY++
Sbjct:   76 LDADYVQTRQQLVSRGYGRLLEIAATQGDRDVTAYPLPEAIEKYKQ 121          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A517N618_9BACT (Uncharacterized protein n=1 Tax=Rubripirellula lacrimiformis TaxID=1930273 RepID=A0A517N618_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 3.970e-9
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYR 135
            LD +YV  R  LV+RG++RL EI A   + D+T+YPLPEAIAKYR
Sbjct:   76 LDADYVAARTALVTRGYQRLLEIAATEGDRDVTAYPLPEAIAKYR 120          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A5C6E172_9BACT (Uncharacterized protein n=1 Tax=Novipirellula artificiosorum TaxID=2528016 RepID=A0A5C6E172_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 5.610e-9
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYR 135
            LD E+V++R  LV+RGFERLREI  +  + D+T+YPL E IA+YR
Sbjct:   76 LDKEFVRERTDLVTRGFERLREIAIDERDRDVTTYPLAEVIARYR 120          
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Match: A0A7D8YJ22_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7D8YJ22_9PLAN)

HSP 1 Score: 55.1 bits (131), Expect = 2.150e-8
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYR 135
            LDP +V  R+ LVSRG+ RL E+E +  E D+TSYPLPE + +YR
Sbjct:   76 LDPAFVTARQELVSRGYARLVELERQRGEPDVTSYPLPEVLDRYR 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112927.2687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A518IP59_9BACT3.930e-24100.00Uncharacterized protein n=4 Tax=Rosistilla TaxID=2... [more]
A0A517MKU9_9BACT2.600e-1164.44Uncharacterized protein n=1 Tax=Roseimaritima mult... [more]
A0A7Y2AKJ0_9BACT2.420e-1056.52Uncharacterized protein n=1 Tax=Pirellulaceae bact... [more]
M5RJM8_9BACT3.430e-1056.52Uncharacterized protein n=1 Tax=Rhodopirellula mai... [more]
A0A1Z9QW46_9PLAN1.400e-958.70Uncharacterized protein n=5 Tax=Planctomycetia Tax... [more]
A0A5C6E2U9_9BACT1.940e-960.00Uncharacterized protein n=1 Tax=Novipirellula aure... [more]
A0A517NNZ8_9BACT3.880e-958.70Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A517N618_9BACT3.970e-960.00Uncharacterized protein n=1 Tax=Rubripirellula lac... [more]
A0A5C6E172_9BACT5.610e-957.78Uncharacterized protein n=1 Tax=Novipirellula arti... [more]
A0A7D8YJ22_9PLAN2.150e-855.56Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112927contigM-pyrifera_M_contig112927:441..581 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8389134-CDS-M-pyrifera_M_contig112927:440..5811622815642.8389134-CDS-M-pyrifera_M_contig112927:440..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112927 441..581 -
1692277501.6235638-CDS-M-pyrifera_M_contig112927:440..5811692277501.6235638-CDS-M-pyrifera_M_contig112927:440..581Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112927 441..581 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112927.2687.1prot_M-pyrifera_M_contig112927.2687.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112927 441..581 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112927.2687.1

>prot_M-pyrifera_M_contig112927.2687.1 ID=prot_M-pyrifera_M_contig112927.2687.1|Name=mRNA_M-pyrifera_M_contig112927.2687.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=47bp
LDPEYVQQRETLVSRGFERLREIEAEGPEGDITSYPLPEAIAKYRR*
back to top

mRNA from alignment at M-pyrifera_M_contig112927:441..581-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112927.2687.1 ID=mRNA_M-pyrifera_M_contig112927.2687.1|Name=mRNA_M-pyrifera_M_contig112927.2687.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=141bp|location=Sequence derived from alignment at M-pyrifera_M_contig112927:441..581- (Macrocystis pyrifera P11B4 male)
CTCGATCCGGAGTACGTTCAGCAGCGCGAGACCTTGGTCAGTCGCGGGTT CGAGCGACTGCGTGAGATCGAAGCTGAAGGACCCGAGGGAGACATCACTT CCTATCCGCTGCCCGAGGCGATCGCGAAGTATCGGCGCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112927:441..581-

>mRNA_M-pyrifera_M_contig112927.2687.1 ID=mRNA_M-pyrifera_M_contig112927.2687.1|Name=mRNA_M-pyrifera_M_contig112927.2687.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=282bp|location=Sequence derived from alignment at M-pyrifera_M_contig112927:441..581- (Macrocystis pyrifera P11B4 male)
CTCGATCCGGAGTACGTTCAGCAGCGCGAGACCTTGGTCAGTCGCGGGTT
CGAGCGACTGCGTGAGATCGAAGCTGAAGGACCCGAGGGAGACATCACTT
CCTATCCGCTGCCCGAGGCGATCGCGAAGTATCGGCGCTGACTCGATCCG
GAGTACGTTCAGCAGCGCGAGACCTTGGTCAGTCGCGGGTTCGAGCGACT
GCGTGAGATCGAAGCTGAAGGACCCGAGGGAGACATCACTTCCTATCCGC
TGCCCGAGGCGATCGCGAAGTATCGGCGCTGA
back to top