mRNA_M-pyrifera_M_contig112923.2686.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112923.2686.1
Unique NamemRNA_M-pyrifera_M_contig112923.2686.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B1B1R2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B1R2_9ACTN)

HSP 1 Score: 122 bits (307), Expect = 6.680e-32
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            MT+LLDAARDLRT LD EGAKAEA+G+ MTDEAV+LC+EAGLYG L  REVGGAELS  +SLDVFTELARADGSIGW
Sbjct:    1 MTELLDAARDLRTTLDEEGAKAEAEGTHMTDEAVKLCREAGLYGVLSPREVGGAELSFGESLDVFTELARADGSIGW 77          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A7X5WQL5_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WQL5_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 1.930e-28
Identity = 58/77 (75.32%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            MT LLDAARDL + LDAEGAKAE+ G+PMTDEAVRLC+EAGLY  +V R+VGGAEL   D LDVF E+ARADGSIGW
Sbjct:    1 MTALLDAARDLWSQLDAEGAKAESAGTPMTDEAVRLCQEAGLYTTIVPRDVGGAELPLVDCLDVFAEIARADGSIGW 77          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A3C0HMX4_9ACTN (Acyl-CoA_dh_N domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C0HMX4_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 2.800e-26
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 1
Query:    1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            MT LLDAARDL   LDAE A AE  G+PMTD AV LC++AGLYG ++ R+ GGAEL+  +SLDVF ELARADGS GW
Sbjct:    1 MTALLDAARDLFETLDAEAAIAEEAGTPMTDRAVALCRDAGLYGTMITRDAGGAELTIGESLDVFKELARADGSTGW 77          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A2D6U8C9_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6U8C9_9ACTN)

HSP 1 Score: 98.2 bits (243), Expect = 1.260e-22
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            MT LLDAARDL   LDAE A AE  G+PMTD AV LC++AG YG ++ R+ GGAEL+  +SLDVF  LARADGS GW
Sbjct:    1 MTXLLDAARDLFETLDAEAAIAEEAGTPMTDRAVALCRDAGXYGTMITRDAGGAELTIGESLDVFKXLARADGSTGW 77          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A523JU15_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JU15_9DELT)

HSP 1 Score: 78.2 bits (191), Expect = 2.980e-15
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    4 TQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            T LLDAAR LRT +DA  +KA    +P+  E V   ++AGL+G +  R+VGGAEL   D +DVF E+ARADGS GW
Sbjct:    3 TDLLDAARSLRTTIDANASKA--GNAPIPRETVEALQQAGLFGVMCPRDVGGAELPILDVIDVFAEVARADGSAGW 76          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B1EDT4_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EDT4_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-14
Identity = 42/77 (54.55%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    4 TQLLDAARDLRTALDAEGAKAEADGSPMTDEAV-RLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            ++LL+ AR+LR+ +DA GA A A G+    +AV   C EAGLYG L  R VGGAEL   + LDVF E+A ADGS+GW
Sbjct:    3 SELLERARELRSTIDAAGAAASASGATTLPQAVVDACFEAGLYGTLSPRAVGGAELPIGECLDVFAEVAYADGSVGW 79          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B0WN38_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=5 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WN38_9ACTN)

HSP 1 Score: 75.9 bits (185), Expect = 2.010e-14
Identity = 41/77 (53.25%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    4 TQLLDAARDLRTALDAEGAKA-EADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            ++LL+ AR+LR+ +DA GA A E+  + +  E V  C EAGLYG L  R VGGAEL   D LDVF E+A  DGS+GW
Sbjct:    3 SELLERARELRSTVDAAGAAAAESGATALPQELVSACFEAGLYGTLSPRAVGGAELPIDDCLDVFAEVAYGDGSVGW 79          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A7K2E8F7_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E8F7_9ACTN)

HSP 1 Score: 70.5 bits (171), Expect = 4.300e-14
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 TQLLDAARDLRTALDAEGAKA-EADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADG 219
            ++LL+ ARDLR A+DA GA A E   + +  E V +C EAGLYGAL  R VGGAEL   D LDVF E+A  DG
Sbjct:    3 SELLERARDLRPAVDAGGAAAAETGATALPQELVSVCFEAGLYGALSPRAVGGAELPIDDCLDVFAEVAYGDG 75          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A6B1BXE3_9ACTN (Acyl-CoA_dh_2 domain-containing protein n=8 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1BXE3_9ACTN)

HSP 1 Score: 62.8 bits (151), Expect = 9.720e-10
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    4 TQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            ++ LD AR+LR+ +D   AK   DG P+  E V    +A L+  +V   VGG E+   D +DV+ E++RADGS+GW
Sbjct:    3 SEYLDRARELRSLIDENAAKT--DGLPIPQETVNALVDAELHKVMVPEAVGGIEIPINDCIDVWAEISRADGSVGW 76          
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Match: A0A7K0V2R5_9ACTN (Uncharacterized protein n=5 Tax=root TaxID=1 RepID=A0A7K0V2R5_9ACTN)

HSP 1 Score: 57.4 bits (137), Expect = 7.960e-8
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   22 ARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVAREVGGAELSATDSLDVFTELARADGSIGW 231
            AR LR+ ++ E  + E+    MT + V+   E+GL+G +V   +GG+E     SL+VF ELA ADGSIGW
Sbjct:   22 ARGLRSFIEQEAGRTES-ARTMTADLVKAFSESGLFGLMVPTSLGGSEADTRTSLEVFEELAYADGSIGW 90          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112923.2686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6B1B1R2_9ACTN6.680e-3281.82Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7X5WQL5_9ACTN1.930e-2875.32Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3C0HMX4_9ACTN2.800e-2667.53Acyl-CoA_dh_N domain-containing protein (Fragment)... [more]
A0A2D6U8C9_9ACTN1.260e-2264.94Acyl-CoA_dh_2 domain-containing protein n=6 Tax=Ac... [more]
A0A523JU15_9DELT2.980e-1553.95Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A6B1EDT4_9ACTN1.060e-1454.55Acyl-CoA_dh_2 domain-containing protein n=2 Tax=Ac... [more]
A0A6B0WN38_9ACTN2.010e-1453.25Acyl-CoA_dh_2 domain-containing protein n=5 Tax=Ac... [more]
A0A7K2E8F7_9ACTN4.300e-1456.16Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6B1BXE3_9ACTN9.720e-1042.11Acyl-CoA_dh_2 domain-containing protein n=8 Tax=Ac... [more]
A0A7K0V2R5_9ACTN7.960e-844.29Uncharacterized protein n=5 Tax=root TaxID=1 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112923contigM-pyrifera_M_contig112923:3..233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.79672-CDS-M-pyrifera_M_contig112923:2..2331622815642.79672-CDS-M-pyrifera_M_contig112923:2..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112923 3..233 -
1692277501.615407-CDS-M-pyrifera_M_contig112923:2..2331692277501.615407-CDS-M-pyrifera_M_contig112923:2..233Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112923 3..233 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112923.2686.1prot_M-pyrifera_M_contig112923.2686.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112923 3..233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112923.2686.1

>prot_M-pyrifera_M_contig112923.2686.1 ID=prot_M-pyrifera_M_contig112923.2686.1|Name=mRNA_M-pyrifera_M_contig112923.2686.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=77bp
MTQLLDAARDLRTALDAEGAKAEADGSPMTDEAVRLCKEAGLYGALVARE
VGGAELSATDSLDVFTELARADGSIGW
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mRNA from alignment at M-pyrifera_M_contig112923:3..233-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112923.2686.1 ID=mRNA_M-pyrifera_M_contig112923.2686.1|Name=mRNA_M-pyrifera_M_contig112923.2686.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=231bp|location=Sequence derived from alignment at M-pyrifera_M_contig112923:3..233- (Macrocystis pyrifera P11B4 male)
ATGACACAACTGCTCGACGCAGCCCGCGACCTACGTACCGCGCTCGACGC GGAAGGCGCGAAGGCCGAGGCCGACGGCTCACCGATGACCGATGAGGCCG TCCGCTTGTGCAAGGAAGCCGGGCTCTACGGAGCCCTGGTCGCCCGCGAG GTCGGCGGCGCCGAACTCTCGGCCACCGACAGCCTCGACGTCTTCACTGA GCTCGCCCGCGCCGACGGCTCCATCGGCTGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112923:3..233-

>mRNA_M-pyrifera_M_contig112923.2686.1 ID=mRNA_M-pyrifera_M_contig112923.2686.1|Name=mRNA_M-pyrifera_M_contig112923.2686.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=462bp|location=Sequence derived from alignment at M-pyrifera_M_contig112923:3..233- (Macrocystis pyrifera P11B4 male)
ATGACACAACTGCTCGACGCAGCCCGCGACCTACGTACCGCGCTCGACGC
GGAAGGCGCGAAGGCCGAGGCCGACGGCTCACCGATGACCGATGAGGCCG
TCCGCTTGTGCAAGGAAGCCGGGCTCTACGGAGCCCTGGTCGCCCGCGAG
GTCGGCGGCGCCGAACTCTCGGCCACCGACAGCCTCGACGTCTTCACTGA
GCTCGCCCGCGCCGACGGCTCCATCGGCTGGATGACACAACTGCTCGACG
CAGCCCGCGACCTACGTACCGCGCTCGACGCGGAAGGCGCGAAGGCCGAG
GCCGACGGCTCACCGATGACCGATGAGGCCGTCCGCTTGTGCAAGGAAGC
CGGGCTCTACGGAGCCCTGGTCGCCCGCGAGGTCGGCGGCGCCGAACTCT
CGGCCACCGACAGCCTCGACGTCTTCACTGAGCTCGCCCGCGCCGACGGC
TCCATCGGCTGG
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