mRNA_M-pyrifera_M_contig112912.2685.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112912.2685.1
Unique NamemRNA_M-pyrifera_M_contig112912.2685.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A7S4KQ08_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KQ08_GUITH)

HSP 1 Score: 228 bits (581), Expect = 1.150e-73
Identity = 107/153 (69.93%), Postives = 131/153 (85.62%), Query Frame = 1
Query:    1 DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            ++ L++NVV++DL +PM +IL+ L+KHPIKTRLSLTG ++VARDIAHAK K+RLD+G GLPDY+K++ +YYAGPAKTPEG  SGSFGPTTAGRMD YV +F K G S+I+LAKGNRS+QV+ ACK  GGFYLGSIGGPAA LA  CIKKV +L
Sbjct:   13 EDKLSKNVVKLDLKKPMKEILNVLTKHPIKTRLSLTGTLVVARDIAHAKLKERLDSGQGLPDYVKNHPIYYAGPAKTPEGLPSGSFGPTTAGRMDPYVDLFQKNGGSLITLAKGNRSKQVTSACKNNGGFYLGSIGGPAAILAKNCIKKVEVL 165          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A2E6QK12_9PROT (Fumarate hydratase class I n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QK12_9PROT)

HSP 1 Score: 238 bits (606), Expect = 2.620e-73
Identity = 112/150 (74.67%), Postives = 133/150 (88.67%), Query Frame = 1
Query:   10 LTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            L    V++DLN+PM++IL+TLS++PI+TRLSLTGPM+VARDIAHAK K+R+DAG GLP YI+D+MVYYAGPAKTPEGYASGSFGPTTAGRMDSYV +F   G SM+ LAKGNRSRQV++ACK +GGFYLGSIGGPAA LA +CIKKV +L
Sbjct:  352 LAGETVQVDLNRPMSEILATLSQYPIRTRLSLTGPMVVARDIAHAKLKERIDAGEGLPSYIRDHMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQANGGSMVMLAKGNRSRQVTQACKTHGGFYLGSIGGPAARLAQDCIKKVEVL 501          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: L8GPI2_ACACA (Fumarate hydratase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPI2_ACACA)

HSP 1 Score: 238 bits (608), Expect = 3.980e-73
Identity = 111/153 (72.55%), Postives = 138/153 (90.20%), Query Frame = 1
Query:    1 DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            ++ L++ VV IDLN+PM++I +TLSK+PIKTRLSL+G ++VARDIAHAK K+RLD G GLP Y+KD+++YYAGPAKTPEGYASGSFGPTTAGRMDSYV +FMK G S+I+LAKGNRS+QV++ACK+YGGFYLGSIGGPAA LA +CI+KV +L
Sbjct:  396 EDKLSDTVVNIDLNKPMSEIQATLSKYPIKTRLSLSGTLVVARDIAHAKLKERLDNGQGLPQYVKDHIIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDMFMKNGGSLITLAKGNRSKQVTEACKKYGGFYLGSIGGPAARLAQDCIRKVEVL 548          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A6A5BT61_NAEFO (Fumarate hydratase n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BT61_NAEFO)

HSP 1 Score: 237 bits (605), Expect = 1.080e-72
Identity = 114/153 (74.51%), Postives = 138/153 (90.20%), Query Frame = 1
Query:    1 DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            +++L+E+VVEIDLN+PM +ILS LSK+PIKTRLSL+GP+IVARDIAHAK K+RLD G GLPDYIK++++YYAGPAKTPEGYASGSFGPTTAGRMDSYV +F + G S+I+LAKGNRSR+V++AC +YGGFYLGSIGGPAA LA   IKKV +L
Sbjct:  396 EKDLSEHVVEIDLNRPMKEILSILSKYPIKTRLSLSGPLIVARDIAHAKLKERLDRGEGLPDYIKNHIIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQQNGGSLITLAKGNRSREVTQACSKYGGFYLGSIGGPAAILAANNIKKVEVL 548          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: D2UY48_NAEGR (Fumarate hydratase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2UY48_NAEGR)

HSP 1 Score: 237 bits (604), Expect = 1.400e-72
Identity = 114/150 (76.00%), Postives = 134/150 (89.33%), Query Frame = 1
Query:    1 DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKV 450
            +++L+E VV+IDLN+PM DILS LSK+PIKTRLSL+GP+IVARDIAHAK K+RLD G GLPDY+K++++YYAGPAKTPEGYASGSFGPTTAGRMDSYV +F K G S+I+LAKGNRSR+V+KAC E GGFYLGSIGGPAA LA   IKKV
Sbjct:  392 EKDLSEQVVKIDLNRPMKDILSVLSKYPIKTRLSLSGPLIVARDIAHAKLKERLDRGEGLPDYVKNHIIYYAGPAKTPEGYASGSFGPTTAGRMDSYVDLFQKNGGSLITLAKGNRSREVTKACSENGGFYLGSIGGPAAILAANNIKKV 541          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A7K1DKN7_9ACTN (Fumarate hydratase n=2 Tax=root TaxID=1 RepID=A0A7K1DKN7_9ACTN)

HSP 1 Score: 229 bits (585), Expect = 1.940e-72
Identity = 110/152 (72.37%), Postives = 129/152 (84.87%), Query Frame = 1
Query:    4 ENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            + L+ +VV IDLN PM++I +TLSK+P+KTR+ LTGPM+VARDIAHAK K RLD+G GLPDY+K Y VYYAGPAKTPEG+ASGSFGPTTAGRMDSYV  F + G S+I LAKGNRS QV++ACK YGGFYLGSIGGPAA LA +CI KV +L
Sbjct:  138 DELSPDVVNIDLNLPMSEIRATLSKYPVKTRIMLTGPMVVARDIAHAKLKQRLDSGEGLPDYLKQYCVYYAGPAKTPEGFASGSFGPTTAGRMDSYVDEFQRAGGSLIMLAKGNRSNQVTQACKTYGGFYLGSIGGPAARLAQDCITKVEVL 289          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A0B7BGZ2_9EUPU (Uncharacterized protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BGZ2_9EUPU)

HSP 1 Score: 227 bits (578), Expect = 2.340e-72
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = 1
Query:    1 DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            D++L   VV +++NQPM DIL  L K+PIKTR+SL+G ++VARDIAHAK K++LDAG GLP YIK++ VYYAGPAKTP+GYASGSFGPTTAGRMDSYV  F K G SMI LAKGNRS+QV+ ACK+YGGFYLGSIGGPAA LA  CIKKV +L
Sbjct:   73 DKDLGGEVVNVNINQPMKDILQQLDKYPIKTRVSLSGTLVVARDIAHAKLKEQLDAGKGLPQYIKNHPVYYAGPAKTPQGYASGSFGPTTAGRMDSYVAEFQKAGGSMIMLAKGNRSKQVTTACKQYGGFYLGSIGGPAAILAQNCIKKVEVL 225          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: E4NGD0_KITSK (Fumarate hydratase class I n=59 Tax=Actinomycetia TaxID=1760 RepID=E4NGD0_KITSK)

HSP 1 Score: 235 bits (600), Expect = 3.020e-72
Identity = 112/153 (73.20%), Postives = 133/153 (86.93%), Query Frame = 1
Query:    1 DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            DE+L ++VV IDLN+PMA++ + LSK+P+KTRLSLTG ++VARDIAHAK K+RLDAG G+P Y+KD+ VYYAGPAKTPEGYASGSFGPTTAGRMDSYV  F   G SM+ LAKGNRS+QV+KAC E+GGFYLGSIGGPAA LA +CIKKV +L
Sbjct:  351 DEHLNDDVVRIDLNRPMAEVRAELSKYPVKTRLSLTGTLVVARDIAHAKIKERLDAGQGMPQYLKDHPVYYAGPAKTPEGYASGSFGPTTAGRMDSYVDQFQAAGGSMVMLAKGNRSKQVTKACNEHGGFYLGSIGGPAARLAQDCIKKVEVL 503          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A0L0FZT3_9EUKA (Fumerase_C domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FZT3_9EUKA)

HSP 1 Score: 225 bits (573), Expect = 3.990e-72
Identity = 107/150 (71.33%), Postives = 130/150 (86.67%), Query Frame = 1
Query:   10 LTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            ++E VV++DLN+PM DILS L+KHPIKTRLSLTG ++VARDIAHAK K+R+++G GLP Y+KD++VYYAGPAKTP+GYASGSFGPTTAGRMDSYV +F K G SM+ LAKGNRS+ V+KACK+  GFYLGSIGGPAA LA   I+KV +L
Sbjct:   39 VSEEVVQVDLNRPMKDILSELTKHPIKTRLSLTGTIVVARDIAHAKLKERIESGEGLPQYMKDHIVYYAGPAKTPDGYASGSFGPTTAGRMDSYVDLFQKNGGSMVMLAKGNRSKAVTKACKDNKGFYLGSIGGPAAILAQNNIRKVEVL 188          
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Match: A0A7K1ENV3_9ACTN (Fumarate hydratase n=2 Tax=root TaxID=1 RepID=A0A7K1ENV3_9ACTN)

HSP 1 Score: 224 bits (571), Expect = 6.400e-72
Identity = 109/152 (71.71%), Postives = 127/152 (83.55%), Query Frame = 1
Query:    4 ENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKWKDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPIFMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKVRLL 459
            ++L++ VV IDL QPM  I +TL+K+P+KTR+ LTGPM+VARDIAHAK K+RLDAG GLP Y+KD+ VYYAGPAKTPEG ASGSFGPTTAGRMDSYV  F   G S I LAKGNRSRQV++ACK +GGFYLGSIGGPAA LA +CI KV +L
Sbjct:   22 DDLSDEVVHIDLTQPMDQIRATLTKYPVKTRVMLTGPMVVARDIAHAKLKERLDAGAGLPQYMKDHCVYYAGPAKTPEGMASGSFGPTTAGRMDSYVEDFQAAGGSFIMLAKGNRSRQVTEACKAHGGFYLGSIGGPAARLAQDCITKVEVL 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112912.2685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4KQ08_GUITH1.150e-7369.93Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A2E6QK12_9PROT2.620e-7374.67Fumarate hydratase class I n=1 Tax=Rhodospirillace... [more]
L8GPI2_ACACA3.980e-7372.55Fumarate hydratase n=1 Tax=Acanthamoeba castellani... [more]
A0A6A5BT61_NAEFO1.080e-7274.51Fumarate hydratase n=2 Tax=Naegleria TaxID=5761 Re... [more]
D2UY48_NAEGR1.400e-7276.00Fumarate hydratase n=1 Tax=Naegleria gruberi TaxID... [more]
A0A7K1DKN7_9ACTN1.940e-7272.37Fumarate hydratase n=2 Tax=root TaxID=1 RepID=A0A7... [more]
A0A0B7BGZ2_9EUPU2.340e-7271.90Uncharacterized protein n=1 Tax=Arion vulgaris Tax... [more]
E4NGD0_KITSK3.020e-7273.20Fumarate hydratase class I n=59 Tax=Actinomycetia ... [more]
A0A0L0FZT3_9EUKA3.990e-7271.33Fumerase_C domain-containing protein n=1 Tax=Sphae... [more]
A0A7K1ENV3_9ACTN6.400e-7271.71Fumarate hydratase n=2 Tax=root TaxID=1 RepID=A0A7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112912contigM-pyrifera_M_contig112912:1..480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.7
Seed ortholog evalue3.9e-60
Seed eggNOG ortholog5762.XP_002683156.1
Preferred nameFUM1
KEGG rclassRC00443
KEGG koko:K01676
KEGG ReactionR01082
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00620,map00720,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011,M00173,M00374
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fumarase C-terminus
EggNOG OGs2QT04@2759,COG1838@1
EC4.2.1.2
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.7615662-CDS-M-pyrifera_M_contig112912:0..4801622815642.7615662-CDS-M-pyrifera_M_contig112912:0..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112912 1..480 +
1692277501.6049736-CDS-M-pyrifera_M_contig112912:0..4801692277501.6049736-CDS-M-pyrifera_M_contig112912:0..480Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112912 1..480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112912.2685.1prot_M-pyrifera_M_contig112912.2685.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112912 1..480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112912.2685.1

>prot_M-pyrifera_M_contig112912.2685.1 ID=prot_M-pyrifera_M_contig112912.2685.1|Name=mRNA_M-pyrifera_M_contig112912.2685.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
DENLTENVVEIDLNQPMADILSTLSKHPIKTRLSLTGPMIVARDIAHAKW
KDRLDAGMGLPDYIKDYMVYYAGPAKTPEGYASGSFGPTTAGRMDSYVPI
FMKEGASMISLAKGNRSRQVSKACKEYGGFYLGSIGGPAAALALECIKKV
RLLFLSSLSL
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mRNA from alignment at M-pyrifera_M_contig112912:1..480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112912.2685.1 ID=mRNA_M-pyrifera_M_contig112912.2685.1|Name=mRNA_M-pyrifera_M_contig112912.2685.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig112912:1..480+ (Macrocystis pyrifera P11B4 male)
GACGAAAACCTCACGGAGAACGTGGTGGAGATCGATCTGAACCAGCCGAT GGCAGACATTCTCTCGACTCTCTCCAAGCATCCGATCAAGACTCGCCTTT CGCTGACAGGGCCGATGATCGTCGCACGTGACATAGCGCACGCCAAGTGG AAGGACCGCCTCGACGCTGGCATGGGTCTGCCAGACTACATCAAGGACTA CATGGTCTACTACGCAGGGCCAGCCAAGACGCCAGAGGGTTACGCAAGCG GCTCCTTTGGCCCCACCACCGCAGGCAGGATGGACTCCTACGTGCCCATC TTCATGAAGGAGGGCGCAAGCATGATCAGCCTCGCCAAGGGCAACCGCTC CCGCCAGGTGAGCAAGGCCTGCAAGGAGTACGGCGGCTTCTACCTCGGCT CCATCGGAGGCCCCGCCGCCGCCCTCGCCCTTGAGTGCATCAAGAAGGTC CGCCTCCTCTTCCTTTCTTCTCTTTCTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112912:1..480+

>mRNA_M-pyrifera_M_contig112912.2685.1 ID=mRNA_M-pyrifera_M_contig112912.2685.1|Name=mRNA_M-pyrifera_M_contig112912.2685.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig112912:1..480+ (Macrocystis pyrifera P11B4 male)
GACGAAAACCTCACGGAGAACGTGGTGGAGATCGATCTGAACCAGCCGAT
GGCAGACATTCTCTCGACTCTCTCCAAGCATCCGATCAAGACTCGCCTTT
CGCTGACAGGGCCGATGATCGTCGCACGTGACATAGCGCACGCCAAGTGG
AAGGACCGCCTCGACGCTGGCATGGGTCTGCCAGACTACATCAAGGACTA
CATGGTCTACTACGCAGGGCCAGCCAAGACGCCAGAGGGTTACGCAAGCG
GCTCCTTTGGCCCCACCACCGCAGGCAGGATGGACTCCTACGTGCCCATC
TTCATGAAGGAGGGCGCAAGCATGATCAGCCTCGCCAAGGGCAACCGCTC
CCGCCAGGTGAGCAAGGCCTGCAAGGAGTACGGCGGCTTCTACCTCGGCT
CCATCGGAGGCCCCGCCGCCGCCCTCGCCCTTGAGTGCATCAAGAAGGTC
CGCCTCCTCTTCCTTTCTTCTCTTTCTCTTGACGAAAACCTCACGGAGAA
CGTGGTGGAGATCGATCTGAACCAGCCGATGGCAGACATTCTCTCGACTC
TCTCCAAGCATCCGATCAAGACTCGCCTTTCGCTGACAGGGCCGATGATC
GTCGCACGTGACATAGCGCACGCCAAGTGGAAGGACCGCCTCGACGCTGG
CATGGGTCTGCCAGACTACATCAAGGACTACATGGTCTACTACGCAGGGC
CAGCCAAGACGCCAGAGGGTTACGCAAGCGGCTCCTTTGGCCCCACCACC
GCAGGCAGGATGGACTCCTACGTGCCCATCTTCATGAAGGAGGGCGCAAG
CATGATCAGCCTCGCCAAGGGCAACCGCTCCCGCCAGGTGAGCAAGGCCT
GCAAGGAGTACGGCGGCTTCTACCTCGGCTCCATCGGAGGCCCCGCCGCC
GCCCTCGCCCTTGAGTGCATCAAGAAGGTCCGCCTCCTCTTCCTTTCTTC
TCTTTCTCTT
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