mRNA_M-pyrifera_M_contig112908.2683.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112908.2683.1
Unique NamemRNA_M-pyrifera_M_contig112908.2683.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A507FBW8_9FUNG (IU_nuc_hydro domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FBW8_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 1.850e-20
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    4 QRAPLKMVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFER-ENEHDTRIELISWDLTNDFGLSWSDVDRVLG 345
            + A   ++  ++AA   +T++ +GPLTN+  AL+LDPS +  +  LVVMGG+  ARGN + TAEFNFH DPE+   V  A  +   E   ++ L+ W+ T D  + W+  DR++G
Sbjct:  122 EHAVTALLRMVNAAPGEITILALGPLTNIALALSLDPSFLSKVKALVVMGGATSARGNSNRTAEFNFHCDPESVHVVLHAASKLPLESTPKVTLVPWETTVDHAVPWTFFDRIVG 236          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A1Y2CUX2_9FUNG (Nucleoside hydrolase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CUX2_9FUNG)

HSP 1 Score: 92.0 bits (227), Expect = 1.050e-19
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 TQRAPLKMVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVLG 345
            T RA +++V    A    +TL+ +GPLTN+  A++LD + +  +  LV+MGGS  ARGN S  +EFNFH DPEAA  VF A     E    + LI W+ T D  L W+ VD +LG
Sbjct:  131 TNRAAIELVTRAAANPGTLTLLALGPLTNVALAISLDKNFLKNLKSLVIMGGSIDARGNSSRVSEFNFHCDPEAAHIVFHAAGLLEE--CNVTLIPWETTLDHALPWTFVDYLLG 243          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A4D9D6H7_9STRA (IU_nuc_hydro domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6H7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.160e-19
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = 1
Query:    1 TQRAPLKMVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVL 342
            ++ A L M+         VTLVC+GPLT++  A  LDP+    + +++VMGG+ RA+GN SLT+EFNFH DPEAA  V  +F +         ++SW+ T    ++W  ++ +L
Sbjct:  138 SEHAALAMIRLCKQYAGEVTLVCLGPLTSVALACKLDPTFPASVRQMIVMGGTTRAKGNVSLTSEFNFHKDPEAAHIVLSSFPQSY-------MVSWETTEQHTVAWEFMEELL 244          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A1V5Q093_9CHLR (Pyrimidine-specific ribonucleoside hydrolase RihB n=1 Tax=Chloroflexi bacterium ADurb.Bin360 TaxID=1852861 RepID=A0A1V5Q093_9CHLR)

HSP 1 Score: 87.8 bits (216), Expect = 2.060e-18
Identity = 48/107 (44.86%), Postives = 66/107 (61.68%), Query Frame = 1
Query:   22 MVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVL 342
            ++   +A   A+TLV +GPLTNL  AL LDP++     RLVVMGG+ R+ GN +LTAEFNFHADPEAA  +   +       T + L+SW+ T +   S + V  +L
Sbjct:  106 LIRLANAEPGALTLVALGPLTNLALALRLDPTLPRKYRRLVVMGGAIRSMGNTTLTAEFNFHADPEAAAIILRDW-------TPLTLVSWETTVEHPFSEAQVKALL 205          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: UPI000F8D9108 (nucleoside hydrolase n=1 Tax=Pelagibacterium montanilacus TaxID=2185280 RepID=UPI000F8D9108)

HSP 1 Score: 87.8 bits (216), Expect = 2.440e-18
Identity = 49/102 (48.04%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   40 AAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVLG 345
            A GE V ++ IGPLTNL TAL L+PSIV  IGRL +MGG+   RGN +  AEFN +ADPE+A  VFEA       D    ++ W+      +   DVD +LG
Sbjct:  117 ARGEKVDILMIGPLTNLATALRLEPSIVSGIGRLTIMGGTLHGRGNTTPAAEFNIYADPESAAIVFEA-------DIETLVVPWEPCVSHFMDGPDVDALLG 211          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: UPI001F1BD39B (nucleoside hydrolase n=1 Tax=Lysobacter sp. GX 14042 TaxID=2907155 RepID=UPI001F1BD39B)

HSP 1 Score: 87.4 bits (215), Expect = 3.120e-18
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 TQRAPLKMVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVL 342
            ++ A L ++   H     + LV +GPLTNL  AL LDP++   + RLVVMGG+    GN S  AEFN   DPEAA+ VFEAFER       IEL  W+ T   GL     DRVL
Sbjct:  107 SEHAALAILRLSHEHAGRLLLVALGPLTNLALALRLDPTLPARVARLVVMGGAVTGHGNLSAAAEFNVGFDPEAAKVVFEAFER-------IELADWEATLAHGLHH---DRVL 210          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A0A0MAN9_9GAMM (Nucleoside hydrolase n=1 Tax=Lysobacter defluvii IMMIB APB-9 = DSM 18482 TaxID=1385515 RepID=A0A0A0MAN9_9GAMM)

HSP 1 Score: 85.1 bits (209), Expect = 2.170e-17
Identity = 50/114 (43.86%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    1 TQRAPLKMVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVL 342
            T+ A L ++   H     + LV +GPLTNL  AL LDP++   + RLVVMGG+    GN +  AEFN   DPEAA+ VF+AF+R       I+L  W+ T   GL     DRVL
Sbjct:  103 TEHAALAILRLSHEHAGRLLLVALGPLTNLALALRLDPTLPQRVARLVVMGGAVTGHGNLTAAAEFNVGYDPEAAKVVFDAFDR-------IDLADWEATLAHGLHH---DRVL 206          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A088S516_9TRYP (Inosine-guanine nucleoside hydrolase, putative n=9 Tax=Viannia TaxID=37616 RepID=A0A088S516_9TRYP)

HSP 1 Score: 84.3 bits (207), Expect = 6.360e-17
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = 1
Query:   61 LVCIGPLTNLDTALALDPSIVHCIGR-----LVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTR-IELISWDLTNDFGLSWSDVDRVLGGQ 351
            LVC+GPLTN+  A+ L+P +   +G      + +MGG+  A+GN SLTAEFN H DPEAA  VF      N+ + R + ++SW++T +  ++W+  D  LG Q
Sbjct:  128 LVCLGPLTNVALAMRLEPGVFDVLGSETEPAITIMGGTSEAKGNSSLTAEFNIHCDPEAAYVVF------NQRNMRPVRVVSWEVTVECCMTWTFFDEWLGRQ 224          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A7S0Z4J0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z4J0_9CRYP)

HSP 1 Score: 79.0 bits (193), Expect = 1.380e-16
Identity = 41/98 (41.84%), Postives = 56/98 (57.14%), Query Frame = 1
Query:   55 VTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRVLGG 348
            V+++ +GPLTN+  A  LDP        LVVMGG   ARGN SLTAEFNF +DPEAA    EAF    +   ++ ++ W+   +  + W + D   GG
Sbjct:   21 VSVLALGPLTNVALACRLDPLFPSRCAGLVVMGGCSSARGNASLTAEFNFWSDPEAAHVCLEAFGGV-QGGPKVTIVPWEACLESSIRWREYDEYAGG 117          
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Match: A0A1Y2H9Y7_9FUNG (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2H9Y7_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 1.460e-16
Identity = 49/119 (41.18%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   10 APLKMVEALHAAGEAV---------TLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRARGNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSWSDVDRV 339
            A +K+VE  H A   V         T+V IGPLTN+  A+ LDP  +  I +L VMGGS  A+GN + TAEFNF  DPEAA  VF +  + +    +I L   +LT D    W  ++R+
Sbjct:  113 AKVKVVEDEHGANALVRMCKAEKGMTVVAIGPLTNIAMAIRLDPDFLSYIDKLYVMGGSLLAKGNATRTAEFNFACDPEAAHIVFTSSTKHSIQAPKIVLAPLELTFDHAFDWDLIERL 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112908.2683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A507FBW8_9FUNG1.850e-2040.00IU_nuc_hydro domain-containing protein n=1 Tax=Chy... [more]
A0A1Y2CUX2_9FUNG1.050e-1944.35Nucleoside hydrolase n=1 Tax=Rhizoclosmatium globo... [more]
A0A4D9D6H7_9STRA4.160e-1938.60IU_nuc_hydro domain-containing protein n=2 Tax=Mon... [more]
A0A1V5Q093_9CHLR2.060e-1844.86Pyrimidine-specific ribonucleoside hydrolase RihB ... [more]
UPI000F8D91082.440e-1848.04nucleoside hydrolase n=1 Tax=Pelagibacterium monta... [more]
UPI001F1BD39B3.120e-1846.49nucleoside hydrolase n=1 Tax=Lysobacter sp. GX 140... [more]
A0A0A0MAN9_9GAMM2.170e-1743.86Nucleoside hydrolase n=1 Tax=Lysobacter defluvii I... [more]
A0A088S516_9TRYP6.360e-1741.75Inosine-guanine nucleoside hydrolase, putative n=9... [more]
A0A7S0Z4J0_9CRYP1.380e-1641.84Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1Y2H9Y7_9FUNG1.460e-1641.18Inosine/uridine-preferring nucleoside hydrolase do... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112908contigM-pyrifera_M_contig112908:79..429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue4.5e-15
Seed eggNOG ortholog5664.LmjF.14.0130
Preferred nameIG-NH
KEGG rclassRC00033,RC00063,RC00122,RC00318,RC00485
KEGG koko:K01239,ko:K11273
KEGG ReactionR01245,R01273,R01677,R01770,R02143
KEGG Pathwayko00230,ko00760,ko01100,map00230,map00760,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006152,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008477,GO:0009056,GO:0009116,GO:0009164,GO:0009987,GO:0016787,GO:0016798,GO:0016799,GO:0019439,GO:0034641,GO:0034655,GO:0034656,GO:0042278,GO:0044237,GO:0044238,GO:0044248,GO:0044270,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0055086,GO:0071704,GO:0072521,GO:0072523,GO:1901135,GO:1901136,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901657,GO:1901658
EggNOG free text desc.nucleoside hydrolase
EggNOG OGs3XSIN@5653,COG1957@1,KOG2938@2759
EC3.2.2.1,3.6.4.13
COG Functional cat.F
Best tax levelKinetoplastida
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons1
Model size351
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.6758769-CDS-M-pyrifera_M_contig112908:78..4081622815642.6758769-CDS-M-pyrifera_M_contig112908:78..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112908 79..408 -
1692277501.5499976-CDS-M-pyrifera_M_contig112908:78..4081692277501.5499976-CDS-M-pyrifera_M_contig112908:78..408Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112908 79..408 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.6894124-UTR-M-pyrifera_M_contig112908:408..4291622815642.6894124-UTR-M-pyrifera_M_contig112908:408..429Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112908 409..429 -
1692277501.5620227-UTR-M-pyrifera_M_contig112908:408..4291692277501.5620227-UTR-M-pyrifera_M_contig112908:408..429Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112908 409..429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112908.2683.1prot_M-pyrifera_M_contig112908.2683.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112908 79..408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112908.2683.1

>prot_M-pyrifera_M_contig112908.2683.1 ID=prot_M-pyrifera_M_contig112908.2683.1|Name=mRNA_M-pyrifera_M_contig112908.2683.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MVEALHAAGEAVTLVCIGPLTNLDTALALDPSIVHCIGRLVVMGGSDRAR
GNCSLTAEFNFHADPEAARAVFEAFERENEHDTRIELISWDLTNDFGLSW
SDVDRVLGGQ
back to top

mRNA from alignment at M-pyrifera_M_contig112908:79..429-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112908.2683.1 ID=mRNA_M-pyrifera_M_contig112908.2683.1|Name=mRNA_M-pyrifera_M_contig112908.2683.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig112908:79..429- (Macrocystis pyrifera P11B4 male)
ACGCAGAGGGCGCCGCTGAAGATGGTGGAGGCGCTGCACGCGGCGGGCGA GGCCGTTACGCTGGTGTGCATTGGCCCACTCACGAACCTCGACACCGCGC TGGCACTCGACCCGAGCATCGTCCACTGCATTGGGCGGCTCGTGGTCATG GGCGGCAGCGACAGAGCGCGAGGGAACTGCTCCCTCACTGCAGAGTTCAA CTTCCATGCAGACCCTGAGGCGGCGCGTGCAGTGTTCGAGGCCTTCGAGC GCGAGAACGAACACGACACGCGCATCGAGCTCATCTCCTGGGACCTCACC AACGACTTTGGCCTCTCCTGGAGTGACGTGGACCGCGTGCTGGGCGGCCA G
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112908:79..429-

>mRNA_M-pyrifera_M_contig112908.2683.1 ID=mRNA_M-pyrifera_M_contig112908.2683.1|Name=mRNA_M-pyrifera_M_contig112908.2683.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig112908:79..429- (Macrocystis pyrifera P11B4 male)
ATGGTGGAGGCGCTGCACGCGGCGGGCGAGGCCGTTACGCTGGTGTGCAT
TGGCCCACTCACGAACCTCGACACCGCGCTGGCACTCGACCCGAGCATCG
TCCACTGCATTGGGCGGCTCGTGGTCATGGGCGGCAGCGACAGAGCGCGA
GGGAACTGCTCCCTCACTGCAGAGTTCAACTTCCATGCAGACCCTGAGGC
GGCGCGTGCAGTGTTCGAGGCCTTCGAGCGCGAGAACGAACACGACACGC
GCATCGAGCTCATCTCCTGGGACCTCACCAACGACTTTGGCCTCTCCTGG
AGTGACGTGGACCGCGTGCTGGGCGGCCAGATGGTGGAGGCGCTGCACGC
GGCGGGCGAGGCCGTTACGCTGGTGTGCATTGGCCCACTCACGAACCTCG
ACACCGCGCTGGCACTCGACCCGAGCATCGTCCACTGCATTGGGCGGCTC
GTGGTCATGGGCGGCAGCGACAGAGCGCGAGGGAACTGCTCCCTCACTGC
AGAGTTCAACTTCCATGCAGACCCTGAGGCGGCGCGTGCAGTGTTCGAGG
CCTTCGAGCGCGAGAACGAACACGACACGCGCATCGAGCTCATCTCCTGG
GACCTCACCAACGACTTTGGCCTCTCCTGGAGTGACGTGGACCGCGTGCT
GGGCGGCCAG
back to top