mRNA_M-pyrifera_M_contig11289.2678.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11289.2678.1
Unique NamemRNA_M-pyrifera_M_contig11289.2678.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: D7FNT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNT4_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 8.140e-122
Identity = 183/228 (80.26%), Postives = 204/228 (89.47%), Query Frame = 1 
Query:  304 EERQVAPVAGNLLRTLTGPQFSVAVGIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSLRETAMA 987
            E  Q +PVAG+L+R LTGP  S+ VG+GI+LAVL NRIATP+L D+QARTDILGVIASGGLVTNGVYLLDL VKEAEEVTLVGTFVQEYA++L P AR+DLQWLGESLLLVS ATS+LVY+ GKTLARVGVMGESA I+DAPIL++C+ +GRDGREQYLAALQTLPGK+EFDYLPENCQAVLMLPV E SAVVV+GTNRARAFTPKDI WMKGL  QA LSLRE  +A
Sbjct:   65 EVEQRSPVAGSLIRALTGPYVSLGVGVGILLAVLANRIATPELVDSQARTDILGVIASGGLVTNGVYLLDLKVKEAEEVTLVGTFVQEYADDLAPGARRDLQWLGESLLLVSPATSMLVYQDGKTLARVGVMGESADIRDAPILRKCISEGRDGREQYLAALQTLPGKVEFDYLPENCQAVLMLPVLEGSAVVVVGTNRARAFTPKDIVWMKGLCNQAALSLREAVVA 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: A0A835YLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLX2_9STRA)

HSP 1 Score: 208 bits (530), Expect = 2.460e-61
Identity = 119/222 (53.60%), Postives = 152/222 (68.47%), Query Frame = 1 
Query:  319 APVAGNLLRTLTGPQFSVAVGIGIILAVLVNRIA-TPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAAT-SVLVYRGGKTLARVGVMGESAAIQDA--PILKRCVRDG-RDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSL 969
            A  +G ++R LTG  FS+A G+  + A+L+NR+A TP L D+QARTDIL +IASGGL+ NGVYLLDL++K A+ VTLVGTF QE    L+      L+WL ESL+L   AT SVLV+  G+T AR GVMG  A   DA  PI+ + +R+  R  +E YL  LQ LPGKIEF YLP NCQ V++  V      VV+G ++ARA+TP+DIAWMK  SE+AT  L
Sbjct:   81 AAQSGGIIRQLTGSNFSLAAGLLGLAAILINRLALTPYLYDSQARTDILALIASGGLIMNGVYLLDLDIKVADSVTLVGTFEQELDPTLSAEQAAQLRWLCESLILAKPATASVLVHVDGRTRARYGVMGGGATTVDAGAPIMAKALREAARSDKEVYLPVLQNLPGKIEFTYLPANCQGVVIQGVLGGRGAVVVGASQARAYTPRDIAWMKAASERATALL 302
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: R1DVS8_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DVS8_EMIHU)

HSP 1 Score: 137 bits (346), Expect = 1.250e-34
Identity = 79/218 (36.24%), Postives = 130/218 (59.63%), Query Frame = 1 
Query:  319 APVAGNLLRTLTGPQFSVAVGIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPA-ARQDLQWLGESLLLVSAATSVLVYR-GGKTLARVGVM------GESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLS 948
            +P A  LLR L  P+ S+  G  ++LA++VNR+AT +L ++Q+R D++  +    L+ +G+  L +   E E V+L G    ++ + +    AR++L W  ++L     A+SV ++R GG TLA  G++        +AA+   P+L++C      G  +YL ALQ LPG++EF Y PE  QA+LM+P+   S VVV+G +R RAF  +D+AW + ++
Sbjct:   32 SPHASGLLRRLRSPEVSLVAGGSLLLALVVNRLATEELLNSQSRADLIATVGPVLLMLDGLSNLAITPAEPEPVSLAGGVAVDWLDPVVSGDARRELAWATDALGAGLGASSVAIWRAGGGTLAACGLLTPRAAASPAAAVVPGPLLQKCAGSAT-GAPEYLPALQLLPGRVEFSYFPEATQALLMVPLGGRSGVVVLGADRKRAFGAEDVAWARAIA 248
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: A0A8J6RIB7_9CYAN (Cofactor assembly of complex C subunit B n=2 Tax=Cyanobacteria/Melainabacteria group TaxID=1798711 RepID=A0A8J6RIB7_9CYAN)

HSP 1 Score: 135 bits (341), Expect = 2.690e-34
Identity = 77/201 (38.31%), Postives = 118/201 (58.71%), Query Frame = 1 
Query:  379 GIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSLRETA 981
            G+G  L +L+NR+ TP L ++QAR+D++GVI S  L+  G+    +     E VTL+G    E  + L  AA+ +L W    LL  +   SV+VYR GKTL R G++   A +   PIL+R +  G+     YL  L   PG++EFDYLPEN Q V+  P+ +  A++ +  N  R++T +D AW++G++++   SL E A
Sbjct:   19 GLGGTL-LLINRVLTPALTESQARSDVMGVILSALLILTGLLWQRVQPTLPEAVTLIGAEGLELDDALPDAAKTELAWASHLLLTNTVTRSVVVYRQGKTLLRRGILAPKAEVTPGPILRRVLETGK---AVYLVKLSIYPGRVEFDYLPENTQGVICQPMGQGGALI-LAANAPRSYTRQDEAWIEGIADKLGHSLGELA 214
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: UPI0016848F88 (cofactor assembly of complex C subunit B n=1 Tax=Richelia sinica TaxID=1357545 RepID=UPI0016848F88)

HSP 1 Score: 135 bits (339), Expect = 3.810e-34
Identity = 77/197 (39.09%), Postives = 114/197 (57.87%), Query Frame = 1 
Query:  379 GIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSL 969
            G+G  L +LVNR+ TP+L D+QAR D+LGVI S  L+  G+    +  +  E V L+G      AE L  A + +L W    LL  +   S++VY  GK L R G++G  + I   PI++R +   +     YL ALQ  PGKIEFDYLPEN Q V+  P+ E   V+++G N  R++T +D  W+  +S++  ++L
Sbjct:   19 GLGATL-LLVNRLLTPELTDSQARGDVLGVILSAVLILTGLIWQQVQPRSPEVVELMGEEGFFLAENLPEAVKTELAWASHILLTNTVTRSLVVYYQGKVLLRRGILGSKSEITPGPIVQRVLATKKP---VYLVALQIYPGKIEFDYLPENTQGVICQPIGEQG-VIILGANAPRSYTKQDENWISAISDKLAVTL 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: A0A2W6ZTT3_9CYAN (Cofactor assembly of complex C subunit B n=1 Tax=Leptolyngbya sp. TaxID=47254 RepID=A0A2W6ZTT3_9CYAN)

HSP 1 Score: 133 bits (334), Expect = 2.980e-33
Identity = 79/200 (39.50%), Postives = 117/200 (58.50%), Query Frame = 1 
Query:  370 VAVGIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSL 969
            VA G+G  L +L+NR+ TP L ++QAR+D++GVI S  L+  G+    +     E VTLVG    E  E L   A+ +L W    LL  +   SV+ YR GKTL R GV+   A +   PILKR +  G+     YL  L+  PG++EFDYLPEN Q V+  P+ +  A++ +  N  R++T +D AW++G++++   SL
Sbjct:   16 VAGGLGGTL-LLLNRVLTPVLTESQARSDVMGVILSALLILTGLLWQRVQPTLPEAVTLVGEEGLELDEALPDTAKTELAWASHLLLTNTVTRSVVAYRQGKTLLRRGVLAPKAEVTPGPILKRVLETGK---AVYLVNLKIYPGRVEFDYLPENTQGVICQPMGQGGALI-LAANAPRSYTRQDEAWIEGIADKLGHSL 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: A0A1Z4RSL5_9CHRO (Uncharacterized protein n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RSL5_9CHRO)

HSP 1 Score: 132 bits (333), Expect = 3.030e-33
Identity = 70/193 (36.27%), Postives = 114/193 (59.07%), Query Frame = 1 
Query:  394 LAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSLR 972
            L +LVNR+ T  L D+QAR+D LGVI    L+  G+    +  K  + VTL+G    E   EL   A+ +L W    L+  +   S++VY  GKT+ R GV+G+++ ++   I++R +  G+     YL  L   PGK+EFDYLPEN Q V+  P+  S  V+++G N  R++T +D  W++G++++  ++L+
Sbjct:   23 LLLLVNRLLTTQLTDSQARSDALGVIEGAVLILVGLLWQQIQAKPPDTVTLIGETGLELDSELPQTAKLELAWASHLLITNTVTRSLVVYYAGKTILRRGVLGKNSQVKPGAIVQRVLTQGKP---VYLVNLNLYPGKVEFDYLPENTQGVICQPIG-SLGVLILGANAPRSYTKQDEVWIEGIADKLAVTLK 211
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: A0A654SHE7_9CYAN (Uncharacterized protein n=1 Tax=Chrysosporum ovalisporum TaxID=75695 RepID=A0A654SHE7_9CYAN)

HSP 1 Score: 132 bits (332), Expect = 3.800e-33
Identity = 72/199 (36.18%), Postives = 117/199 (58.79%), Query Frame = 1 
Query:  379 GIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSLRE 975
            G+G  L +L+NR+ TP+L ++QAR D+LGVI S  L+  G+    +  +  + V L+G    E A +L    + +L W    LL  +   S++V   G+TL R G++G  + +   PILKR +   R     YL AL+  PG+IEFDYLPEN Q V+  P+ +   V+++G N  R++T +D  W+ G++++  ++L+E
Sbjct:   19 GLGATL-LLINRLLTPELTESQARGDVLGVILSAVLILTGLIWQQVQPRSPDTVELIGKEGFELAADLPDTVKTELAWASHLLLTNTVTRSLIVLYQGQTLLRRGILGAKSEVVPGPILKRVLETQRP---IYLVALKVYPGRIEFDYLPENTQGVICQPIGDHG-VLILGANAPRSYTKQDENWIAGIADKLAVTLKE 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: UPI0019F7C38E (Cofactor assembly of complex C subunit B n=1 Tax=Pleurocapsales cyanobacterium LEGE 10410 TaxID=1828828 RepID=UPI0019F7C38E)

HSP 1 Score: 132 bits (332), Expect = 4.010e-33
Identity = 71/197 (36.04%), Postives = 117/197 (59.39%), Query Frame = 1 
Query:  379 GIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKGLSEQATLSL 969
            G+G  L +L+NR+ T  + D+QAR+D LGVI    L+  G+    +  K  + VTL+G    E+A EL+  A+ +L W    LL  +   S++VY  G T+ R GV+G+++ ++   IL+R +   +     YL  L   PGK+EFDYLPEN Q V+  P+  +  V+++G N  R++T KD  W++G++++  ++L
Sbjct:   19 GLGGFL-LLINRLLTAQITDSQARSDALGVIEGAVLILVGLLWQQIQAKTPDTVTLIGETGLEFASELSEVAKTELAWASHLLLTNTVTRSLVVYYDGITMLRRGVLGKNSQVKPGAILERALSKAKP---VYLVNLNLYPGKVEFDYLPENTQGVICQPIG-NKGVLILGANAPRSYTKKDEQWIEGIADKLAVTL 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Match: A0A7S0E2V1_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2V1_9CRYP)

HSP 1 Score: 134 bits (337), Expect = 4.470e-33
Identity = 76/200 (38.00%), Postives = 120/200 (60.00%), Query Frame = 1 
Query:  340 LRTLTGPQFSVAVGIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVTNGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLV-SAATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQTLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWM 936
            +R L     S+AVG+  I  +L+NR+ T DL++ Q+R D+LG+  +  L+ + +  +DL V+E E V L G   +E  +EL       L W  +++L V S A SV++ +GG TL R G MG +  +++  I+K  +  G+   +QYLA LQ LPG+ EFDYLP N QA+L+ PV +   V+++G N+ R  T +D+  +
Sbjct:   78 VRRLVDENSSIAVGLFSISVLLMNRLFTGDLSNAQSRVDLLGIAVASALLVSALSTIDLEVREKETVKLAGVRFEEIPKELGKEREALLLWSLQAVLKVCSNAQSVIIAKGGATLVRYGTMGRNQQLKEGAIVKSAMVQGK---QQYLADLQILPGRFEFDYLPVNTQALLIQPVGD--VVMIVGANKVRPLTARDLVML 272
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11289.2678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNT4_ECTSI8.140e-12280.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLX2_9STRA2.460e-6153.60Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R1DVS8_EMIHU1.250e-3436.24Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A8J6RIB7_9CYAN2.690e-3438.31Cofactor assembly of complex C subunit B n=2 Tax=C... [more]
UPI0016848F883.810e-3439.09cofactor assembly of complex C subunit B n=1 Tax=R... [more]
A0A2W6ZTT3_9CYAN2.980e-3339.50Cofactor assembly of complex C subunit B n=1 Tax=L... [more]
A0A1Z4RSL5_9CHRO3.030e-3336.27Uncharacterized protein n=1 Tax=Chondrocystis sp. ... [more]
A0A654SHE7_9CYAN3.800e-3336.18Uncharacterized protein n=1 Tax=Chrysosporum ovali... [more]
UPI0019F7C38E4.010e-3336.04Cofactor assembly of complex C subunit B n=1 Tax=P... [more]
A0A7S0E2V1_9CRYP4.470e-3338.00Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11289contigM-pyrifera_M_contig11289:1605..6418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.8
Seed ortholog evalue1.6e-97
Seed eggNOG ortholog2880.D7FNT4
Preferred nameCCB4
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009536,GO:0009987,GO:0010190,GO:0016043,GO:0017004,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.Cofactor assembly of complex C subunit B, CCB2/CCB4
EggNOG OGs28KGG@1,2QSXP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1133
Cds size948
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.3219073-UTR-M-pyrifera_M_contig11289:1604..17471622815642.3219073-UTR-M-pyrifera_M_contig11289:1604..1747Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11289 1605..1747 -
1692277501.3516579-UTR-M-pyrifera_M_contig11289:1604..17471692277501.3516579-UTR-M-pyrifera_M_contig11289:1604..1747Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11289 1605..1747 -
1622815642.388048-UTR-M-pyrifera_M_contig11289:6376..64181622815642.388048-UTR-M-pyrifera_M_contig11289:6376..6418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11289 6377..6418 -
1692277501.4165738-UTR-M-pyrifera_M_contig11289:6376..64181692277501.4165738-UTR-M-pyrifera_M_contig11289:6376..6418Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11289 6377..6418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.332173-CDS-M-pyrifera_M_contig11289:1747..19451622815642.332173-CDS-M-pyrifera_M_contig11289:1747..1945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 1748..1945 -
1692277501.3640294-CDS-M-pyrifera_M_contig11289:1747..19451692277501.3640294-CDS-M-pyrifera_M_contig11289:1747..1945Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 1748..1945 -
1622815642.3424647-CDS-M-pyrifera_M_contig11289:3059..32181622815642.3424647-CDS-M-pyrifera_M_contig11289:3059..3218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 3060..3218 -
1692277501.371936-CDS-M-pyrifera_M_contig11289:3059..32181692277501.371936-CDS-M-pyrifera_M_contig11289:3059..3218Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 3060..3218 -
1622815642.3529055-CDS-M-pyrifera_M_contig11289:4414..45371622815642.3529055-CDS-M-pyrifera_M_contig11289:4414..4537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 4415..4537 -
1692277501.3798969-CDS-M-pyrifera_M_contig11289:4414..45371692277501.3798969-CDS-M-pyrifera_M_contig11289:4414..4537Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 4415..4537 -
1622815642.3642862-CDS-M-pyrifera_M_contig11289:5178..54361622815642.3642862-CDS-M-pyrifera_M_contig11289:5178..5436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 5179..5436 -
1692277501.3965042-CDS-M-pyrifera_M_contig11289:5178..54361692277501.3965042-CDS-M-pyrifera_M_contig11289:5178..5436Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 5179..5436 -
1622815642.3756173-CDS-M-pyrifera_M_contig11289:6166..63761622815642.3756173-CDS-M-pyrifera_M_contig11289:6166..6376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 6167..6376 -
1692277501.406982-CDS-M-pyrifera_M_contig11289:6166..63761692277501.406982-CDS-M-pyrifera_M_contig11289:6166..6376Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11289 6167..6376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11289.2678.1prot_M-pyrifera_M_contig11289.2678.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11289 1748..6376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11289.2678.1

>prot_M-pyrifera_M_contig11289.2678.1 ID=prot_M-pyrifera_M_contig11289.2678.1|Name=mRNA_M-pyrifera_M_contig11289.2678.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=316bp
MVMKILMSCLAVLVCAPPPAVEAFHGRPGSISVSTTTWEAPACRHRSCSE
RTLPGGRRSGFPRKQSGARMGDSDDGMLETDASIEGTEERQVAPVAGNLL
RTLTGPQFSVAVGIGIILAVLVNRIATPDLADTQARTDILGVIASGGLVT
NGVYLLDLNVKEAEEVTLVGTFVQEYAEELTPAARQDLQWLGESLLLVSA
ATSVLVYRGGKTLARVGVMGESAAIQDAPILKRCVRDGRDGREQYLAALQ
TLPGKIEFDYLPENCQAVLMLPVHESSAVVVIGTNRARAFTPKDIAWMKG
LSEQATLSLRETAMA*
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mRNA from alignment at M-pyrifera_M_contig11289:1605..6418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11289.2678.1 ID=mRNA_M-pyrifera_M_contig11289.2678.1|Name=mRNA_M-pyrifera_M_contig11289.2678.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4814bp|location=Sequence derived from alignment at M-pyrifera_M_contig11289:1605..6418- (Macrocystis pyrifera P11B4 male)
GCCGACGTCGGGGCTGGATTTTAAGGGACTCTGGGAGCTAGCATGGTGAT
GAAAATATTGATGTCTTGCTTGGCGGTGTTGGTCTGCGCTCCTCCGCCTG
CTGTAGAAGCTTTCCATGGACGACCTGGTAGCATCTCCGTCAGCACCACC
ACCTGGGAAGCGCCTGCTTGCCGTCATCGATCGTGCTCCGAAAGAACTCT
TCCAGGAGGGAGGAGGTCGGGCTTCCCGAGAAAACAAAGTGGTGCTCGCA
TGGTGAGTAGTTGACACTACTCTTGGCCGCACGGAAAACATTGATTGTGT
TGATGATGTTGCATGTTGCACCACTGCCGGGTAAAACATGTTACCTGGTA
CCAGAGCTCAAACGCTTAAACAAACGTTGCGAATTCAAGAGTACCAGCTG
GTACATACAGCAGTAATATTAATATTAATAGTCCTAATAACTATACTCGT
AGTACGAGACAGCAGTGTTACGCCGGTACGAGCTCTGACGGGCGTGTGCT
TGGGCAAGGGGATCTCTAAATCCAGTTTGACGCCAGCAGGTACTTGATGG
TACCTTCAAGCGTTTTGCCGTGGCCATGCACGCACAAGCTCAACCTTTGC
CCCCGACAGGTTACGAGTAGCCCCCCTTTCTCGGCTCCAGGTCCGAATCA
TTTGCTGCAAAATATACACCGTGTCGTCCGTGCATCTCATACCAGTACCA
GGTACGTACCAGGGTACGAGATACGGTACCTGGCATAACCGGCGGTTCTG
TACACACCGTACTAGTAGCGCCGGTGGGAGTACTCGTATCTACTGTAGCT
TATATTTTGTTGCACGTCTTACACTGCCGTCTATGGAACGCATCTGATCA
GCACAACCAACCGCAGATAACATGCACCAGGTACCAGGGTACCAGGTACA
GCAGCAGTACCTGGTATTAATACCTGTAATAACAAACACGCATATCATAC
TCGTCGCGTGCATCAATATGTGCTTAATACAGGGCGACTCAGACGACGGA
ATGTTGGAAACAGACGCGAGCATCGAAGGAACGGAGGAAAGACAAGTGGC
CCCCGTCGCCGGAAATCTCCTCCGAACGCTCACAGGTCCTCAGTTTTCGG
TTGCAGTCGGAATCGGAATCATTTTGGCTGTGCTTGTGAACCGGATCGCC
ACCCCCGACCTTGCTGACACGCAAGCACGCACGGACATCCTTGGGGTGAT
TGCAAGCGGAGGACTCGTCACGAATGGAGTCTACCTGTTGGTGGGTACGG
GAGTGTTACCCCCCCTGTGGCCGTGCTTACCTCAAACTCACACCGACTGC
GTAGTTTGTACATAGGAGGCTACCGCGACTCCACGACGAGTCGTAGCTGT
CGGGCAGCTACAGAATGGGATGATTATTGTTTCTAGATTACTAGATTAGT
CAAATCGAACGAAGCTGTCGTACACGAGTCAGCGCACCATCTCTACTCGC
CGGTTCTTGGACTCTATTCGAAGGGTCACTTGTGTGTCTGTTTTGACGCT
TGTGCAATTACGACAGCAGTAAGTACGTGTACAAGTACGTAAGTATGCTG
CTACTGGGTACCAGCCGGATTCATTGGACCCACTACTGCTGTACGTGCTG
AATAGCAGGTGTATACGACGACTGCTGTTCCTTCAAGGAATCGATGAAGG
CTGAGTGCGCGTTTCGTGATTCGTCGAGTTCGTTCTTCGTCTGCGTGATC
TGCCTTGGAAGTGTCTGTTGCATTACTTAACCTACTGCAGCCTACCGCGT
ACAGTAGTAGTAACTGCCAACCTTCGGGCAATGCTGTTGATGCCGGTGTC
CCCCCCCTCTCCGTCGTGTTCATGGTTGGTGGTGTTCTCTGTTAGTGGAG
GTTCTGACAAACCCGCCGACCTGTTTTTCAGGATCTGAACGTGAAGGAGG
CGGAAGAGGTAACGCTTGTGGGAACGTTCGTCCAAGAGTACGCCGAGGAG
CTGACGCCCGCCGCGCGACAAGACCTCCAATGGTTGGGCGAGTCTTTGCT
CTTGGTGCGTGCTCGGTGTTTAGCGCAACTATCTTCGTTGCCCTTGACCC
TGTCGGCGTCGTGGCGTGTAACCGAACTGTCTGCTTGCCCGCAATTGCAG
GGGCTTCCACGGTGCGAGCACACCATAGCTTCGGTCGCCTTGTCGTCGTG
TGTTGACACAATGCAACAGTGCGTTGTTCATCATGCCCCAAATGTCTTGC
CTTCGTGGTTTGGAGGGCGCCACATTGTACGTACCCCTTTGAAATGAAAA
GCTTTGCGTAATATTGCCCAGTCTCCCAGAAGGTGGGGGAGTATTTTAGT
GTATTGACACAGCTAAGCACCTGACTTGATTGGGTAAGAGAGGGCGCATG
TGGCGACAGCAGTATAAGGGGTTAGCTACTGCTTCCGCCGGTAGCATTCG
GAAACAACATGCGGATGATGCCGGGGCAGCGCATGCGCTTATTGTCGGTC
GTGGGCGTCCGTCATCCTTACTACCTTATCTACATAGTACACATAGGTCG
TATTCGTCGTCATTTCGATCTTCAAAGTGGTGCCGGTTTTAGTATGCCCC
GCGGAAGACCAAGCTCCACCGCGTACGCACGCCCGAGCCACGCTCGCCCC
ACACAGCAGCCCTCGATCACCCCGTCGAAATAGTTGCCACCAAAACCCGA
ATCGGCGAGTGGGGGGCGTTGAGAGGCACGCTCCCGGGGATGGTTTGCTT
GTTCTACGATAGAGGTTCACCCCAATTTTTCTGACGTTCCTATGTCCTCC
CAAGATATAATGCGGAGTTGCACGGGGACAAGCACATGGATACGACTGAT
GCTACACACATCTCGTACGTTTACGTACGCATTATTCCCAACAATGTAGA
GCACAAGTTACATACTCATCCATCCTTCAACTGGCGCTCGGCAAGGACGC
CGTGGCGGCTAAGAAAGTTTTTTGTCCCAAATGTGATATCTCTATCGTAG
AAGGCCTCGCTTGTCATCGTATAATTCCCCATAGCTGTCGTAGAAACGCA
CCATCACGAACCACGTTACGCTTGCACCGGGCGTGCTGGCATGCTACCAC
TCGCTACTCACTCAGGCGAGGTATATGGCGCGGATACGATCGTGCAACGA
TTTTGTGTCGCCGCGTAGAATTTATTGGATATTTCCCTTTTCCGGATACC
TTGTACATCCTTCCAAACGATGTGCGCGTCGTTCTCGACTATTTGCGCAG
GTATCGGCGGCAACGTCGGTGCTGGTATACCGCGGCGGGAAAACTCTGGC
CAGAGTTGGAGTAATGGGGGAGTCGGCTGCCATTCAGGACGCGCCGATTC
TGAAAAGATGTGTTCGGGACGGACGCGATGGGCGCGAGCAGTACCTGGCT
GCTCTTCAGGTAAACTCGCTACTTCCTTGCCGAGGGTTCGTCCTTGTACC
TTACACTCATACTTCGTCTTGTTGAGCATGTTGCCGTATCACACGCAAGA
CAGCACACCACCTCGAACGAATATCCGAGAGGAACTATTTACTCGCGGAA
AGGCGCACACACAACGAAAAATGTGTTTTTGGAAATATCGCTTGGAGACC
TTTCCATGGACGCATCGCTCGATGTTTGTGGTCTCCCCGTTGTCGAGAAT
ACCACCTTGGAAAGCCGTCCGAGACGGTGTGTTTATACCTTTGCGTGCTT
TACGGGAGGCGGGCAAGCCGAGAACCGGAAGCCCACGTTTCGCCCTCCAT
CTTTAGCTGCTGTTTTTGCTTCCCTTGTGCCGATAAGTTTGCCTGGTTGT
GTACATGCGTAATCTGCATTTAGCATTTAGACACTGGGTGCCGGGCGCCC
TTCACGTGTGTCCCTTGCATGGCTCGCCGGACTCCTAGGGCGTGATCGGC
CATGCATGCGTTGTCATGCGCGGTCTGATTAGCGACTTCTGCGTCATCCC
TGATACTTTCGACTTTCGTGGTCAACACGCTTGAAGTGTATTATGGAAGG
TAGACTACATTACTCAAATGTGGGGTGTTCGTAGCCCAAGCGGCATGCTG
CGTCGCGTTTGGGTCAGCCGGCGATCCAACTTCGATACCGTGGGCACCAA
GAGACAAGCGAACAGGAGATACAGTGTGCGACACCACTTTATGGCATGTT
TTGATATTGGGCCAGGCCCGAAATCTTATGTAAGGAAGTATATTTTCCTA
CTCGAATTTTGGAATTATAATGGTCATATTCTTATGGACGACCAAAACTC
GAGCTTGAAATTCTCAACTCCCAACTTATTAAGTGCTGCCGCGTACTGTG
GTCGCTTGGTTTTTGGTGTTGCTTGCCTGCGTTCCTCTGGTGATGCTTCG
GAATATCAAGGAAGATGACGATGAGACGATGCAGTCGCGTTCGGTTATGA
CAGAATAGCAGTATGCGGGCGCTAGGCCATTGCGGCATCGATTCGGTGAT
TAGTTACTGATTCCGACTTATTTTTTTGTAGTGTGTAATTCCCGATCTCC
TTTTCTTTCTGTTGTCGTCGCAGACTCTACCAGGCAAGATCGAGTTTGAC
TACCTCCCAGAGAATTGCCAAGCGGTTTTGATGCTACCGGTGCATGAGTC
ATCTGCGGTCGTTGTGATCGGCACGAACCGGGCGCGCGCTTTCACGCCCA
AGGACATCGCGTGGATGAAAGGACTGAGCGAGCAGGCTACCTTGTCATTG
CGAGAGACGGCCATGGCCTAATTTTTTTTCCGCGCATTATCCCAACGCTT
GATACCCAATTGTGGCTCAATTGACAACGAGCGTACGCGGCATGAACAAT
GAAATGGGCACTGCCCACTATGGGGTGGCAAACCAAGTAATACCAGCACG
AAATGATGCAAGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11289:1605..6418-

>mRNA_M-pyrifera_M_contig11289.2678.1 ID=mRNA_M-pyrifera_M_contig11289.2678.1|Name=mRNA_M-pyrifera_M_contig11289.2678.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1896bp|location=Sequence derived from alignment at M-pyrifera_M_contig11289:1605..6418- (Macrocystis pyrifera P11B4 male)
ATGGTGATGAAAATATTGATGTCTTGCTTGGCGGTGTTGGTCTGCGCTCC
TCCGCCTGCTGTAGAAGCTTTCCATGGACGACCTGGTAGCATCTCCGTCA
GCACCACCACCTGGGAAGCGCCTGCTTGCCGTCATCGATCGTGCTCCGAA
AGAACTCTTCCAGGAGGGAGGAGGTCGGGCTTCCCGAGAAAACAAAGTGG
TGCTCGCATGATGGTGATGAAAATATTGATGTCTTGCTTGGCGGTGTTGG
TCTGCGCTCCTCCGCCTGCTGTAGAAGCTTTCCATGGACGACCTGGTAGC
ATCTCCGTCAGCACCACCACCTGGGAAGCGCCTGCTTGCCGTCATCGATC
GTGCTCCGAAAGAACTCTTCCAGGAGGGAGGAGGTCGGGCTTCCCGAGAA
AACAAAGTGGTGCTCGCATGGGCGACTCAGACGACGGAATGTTGGAAACA
GACGCGAGCATCGAAGGAACGGAGGAAAGACAAGTGGCCCCCGTCGCCGG
AAATCTCCTCCGAACGCTCACAGGTCCTCAGTTTTCGGTTGCAGTCGGAA
TCGGAATCATTTTGGCTGTGCTTGTGAACCGGATCGCCACCCCCGACCTT
GCTGACACGCAAGCACGCACGGACATCCTTGGGGTGATTGCAAGCGGAGG
ACTCGTCACGAATGGAGTCTACCTGTTGGGCGACTCAGACGACGGAATGT
TGGAAACAGACGCGAGCATCGAAGGAACGGAGGAAAGACAAGTGGCCCCC
GTCGCCGGAAATCTCCTCCGAACGCTCACAGGTCCTCAGTTTTCGGTTGC
AGTCGGAATCGGAATCATTTTGGCTGTGCTTGTGAACCGGATCGCCACCC
CCGACCTTGCTGACACGCAAGCACGCACGGACATCCTTGGGGTGATTGCA
AGCGGAGGACTCGTCACGAATGGAGTCTACCTGTTGGATCTGAACGTGAA
GGAGGCGGAAGAGGTAACGCTTGTGGGAACGTTCGTCCAAGAGTACGCCG
AGGAGCTGACGCCCGCCGCGCGACAAGACCTCCAATGGTTGGGCGAGTCT
TTGCTCTTGGATCTGAACGTGAAGGAGGCGGAAGAGGTAACGCTTGTGGG
AACGTTCGTCCAAGAGTACGCCGAGGAGCTGACGCCCGCCGCGCGACAAG
ACCTCCAATGGTTGGGCGAGTCTTTGCTCTTGGTATCGGCGGCAACGTCG
GTGCTGGTATACCGCGGCGGGAAAACTCTGGCCAGAGTTGGAGTAATGGG
GGAGTCGGCTGCCATTCAGGACGCGCCGATTCTGAAAAGATGTGTTCGGG
ACGGACGCGATGGGCGCGAGCAGTACCTGGCTGCTCTTCAGGTATCGGCG
GCAACGTCGGTGCTGGTATACCGCGGCGGGAAAACTCTGGCCAGAGTTGG
AGTAATGGGGGAGTCGGCTGCCATTCAGGACGCGCCGATTCTGAAAAGAT
GTGTTCGGGACGGACGCGATGGGCGCGAGCAGTACCTGGCTGCTCTTCAG
ACTCTACCAGGCAAGATCGAGTTTGACTACCTCCCAGAGAATTGCCAAGC
GGTTTTGATGCTACCGGTGCATGAGTCATCTGCGGTCGTTGTGATCGGCA
CGAACCGGGCGCGCGCTTTCACGCCCAAGGACATCGCGTGGATGAAAGGA
CTGAGCGAGCAGGCTACCTTGTCATTGCGAGAGACGGCCATGGCCTAAAC
TCTACCAGGCAAGATCGAGTTTGACTACCTCCCAGAGAATTGCCAAGCGG
TTTTGATGCTACCGGTGCATGAGTCATCTGCGGTCGTTGTGATCGGCACG
AACCGGGCGCGCGCTTTCACGCCCAAGGACATCGCGTGGATGAAAGGACT
GAGCGAGCAGGCTACCTTGTCATTGCGAGAGACGGCCATGGCCTAA
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