mRNA_M-pyrifera_M_contig112879.2675.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112879.2675.1
Unique NamemRNA_M-pyrifera_M_contig112879.2675.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Match: A0A3D1G7Z7_9BACT (PINc domain-containing protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1G7Z7_9BACT)

HSP 1 Score: 67.0 bits (162), Expect = 1.240e-12
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTPLAKFVKG 153
            +AF++SV+L +TLYDA Y+ATA++TNSV YTADERLV  LSTT L +F+ G
Sbjct:   93 LAFELSVSLPLTLYDAFYLATAMVTNSVLYTADERLVRALSTTKLNEFISG 143
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BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Match: A0A2N0VLH7_9BACT (PINc domain-containing protein n=1 Tax=Rhodohalobacter barkolensis TaxID=2053187 RepID=A0A2N0VLH7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 3.030e-8
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTPLAKFVK 150
            +AFDIS++L VT+YDA YIA A+   S  +TAD+RLV GL+TT  + +VK
Sbjct:   85 LAFDISISLPVTIYDALYIALAVEKQSEMWTADDRLVRGLNTTIFSDYVK 134
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BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Match: A0A2D9FUZ6_9BACT (PINc domain-containing protein n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FUZ6_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 6.140e-8
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTPLAKFVK 150
            +AFDISV+L VT+YDA Y+A A+   ++ +TAD RLV GLS T L+K V+
Sbjct:   84 LAFDISVSLPVTMYDALYLALAMDNQTIMWTADNRLVRGLSNTVLSKHVE 133
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BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Match: A0A1B6YC68_9BACT (PINc domain-containing protein n=1 Tax=Balneola sp. EhC07 TaxID=1849360 RepID=A0A1B6YC68_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 8.340e-8
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTPLAKFVK 150
            +AFDIS++L +T+YDA Y+A AI      YT+D RLVNGLSTT    +V+
Sbjct:   85 LAFDISISLPITIYDANYLALAIKKEGKLYTSDNRLVNGLSTTVFKDYVE 134
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BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Match: A0A316U0X2_9BACT (PINc domain-containing protein n=1 Tax=Rhodohalobacter mucosus TaxID=2079485 RepID=A0A316U0X2_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 3.240e-7
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTPLAKFVK 150
            +AFD+S TL +TLYDACY++ AI  N    TAD R   G+  TP A FV+
Sbjct:   85 LAFDLSSTLPITLYDACYLSVAIEFNQTVTTADMRFYRGIKQTPFAHFVE 134
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BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Match: UPI001ED9E4B0 (type II toxin-antitoxin system VapC family toxin n=1 Tax=Rhodohalobacter sp. WB101 TaxID=2911366 RepID=UPI001ED9E4B0)

HSP 1 Score: 49.3 bits (116), Expect = 7.070e-6
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTP 132
            IAFD+S  LS+TLYDACY+A  I  +   +T+D+R  NG+  TP
Sbjct:   85 IAFDLSSGLSITLYDACYLAVGIEFDQKIFTSDKRFFNGMKNTP 128
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112879.2675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3D1G7Z7_9BACT1.240e-1264.71PINc domain-containing protein n=1 Tax=Balneolacea... [more]
A0A2N0VLH7_9BACT3.030e-856.00PINc domain-containing protein n=1 Tax=Rhodohaloba... [more]
A0A2D9FUZ6_9BACT6.140e-856.00PINc domain-containing protein n=1 Tax=Balneola sp... [more]
A0A1B6YC68_9BACT8.340e-854.00PINc domain-containing protein n=1 Tax=Balneola sp... [more]
A0A316U0X2_9BACT3.240e-752.00PINc domain-containing protein n=1 Tax=Rhodohaloba... [more]
UPI001ED9E4B07.070e-652.27type II toxin-antitoxin system VapC family toxin n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112879contigM-pyrifera_M_contig112879:2..166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.218624-CDS-M-pyrifera_M_contig112879:1..1661622815642.218624-CDS-M-pyrifera_M_contig112879:1..166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112879 2..166 +
1692277501.308366-CDS-M-pyrifera_M_contig112879:1..1661692277501.308366-CDS-M-pyrifera_M_contig112879:1..166Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112879 2..166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112879.2675.1prot_M-pyrifera_M_contig112879.2675.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112879 2..166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112879.2675.1

>prot_M-pyrifera_M_contig112879.2675.1 ID=prot_M-pyrifera_M_contig112879.2675.1|Name=mRNA_M-pyrifera_M_contig112879.2675.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
IAFDISVTLSVTLYDACYIATAILTNSVFYTADERLVNGLSTTPLAKFVK
GFVL*
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mRNA from alignment at M-pyrifera_M_contig112879:2..166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112879.2675.1 ID=mRNA_M-pyrifera_M_contig112879.2675.1|Name=mRNA_M-pyrifera_M_contig112879.2675.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig112879:2..166+ (Macrocystis pyrifera P11B4 male)
ATCGCTTTCGATATTTCTGTTACGCTGTCGGTAACCTTGTATGATGCCTG
CTATATTGCCACGGCAATTCTTACTAATTCTGTATTCTACACAGCCGATG
AGCGATTAGTAAATGGGCTTTCAACTACTCCGTTGGCTAAGTTTGTGAAG
GGATTTGTATTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112879:2..166+

>mRNA_M-pyrifera_M_contig112879.2675.1 ID=mRNA_M-pyrifera_M_contig112879.2675.1|Name=mRNA_M-pyrifera_M_contig112879.2675.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig112879:2..166+ (Macrocystis pyrifera P11B4 male)
ATCGCTTTCGATATTTCTGTTACGCTGTCGGTAACCTTGTATGATGCCTG
CTATATTGCCACGGCAATTCTTACTAATTCTGTATTCTACACAGCCGATG
AGCGATTAGTAAATGGGCTTTCAACTACTCCGTTGGCTAAGTTTGTGAAG
GGATTTGTATTGTGAATCGCTTTCGATATTTCTGTTACGCTGTCGGTAAC
CTTGTATGATGCCTGCTATATTGCCACGGCAATTCTTACTAATTCTGTAT
TCTACACAGCCGATGAGCGATTAGTAAATGGGCTTTCAACTACTCCGTTG
GCTAAGTTTGTGAAGGGATTTGTATTGTGA
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