prot_M-pyrifera_M_contig112779.2661.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_M-pyrifera_M_contig112779.2661.1
Unique Name	prot_M-pyrifera_M_contig112779.2661.1
Type	polypeptide
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length	112

Homology

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A7C1Y5X2_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1Y5X2_9GAMM)

HSP 1 Score: 174 bits (440), Expect = 3.470e-52
Identity = 79/110 (71.82%), Postives = 89/110 (80.91%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MD ++VVGVGNIYASEAL+ AG+HP+R AGR+   RY+ L  AIREVLA AIE GGTTLRDF +SDG PGYF  +L VYGR GEPCP CG PIRQ VIGQRSS+YCP CQ
Sbjct:  161 MDSKVVVGVGNIYASEALFLAGIHPRRPAGRIGAARYDALAGAIREVLAAAIEAGGTTLRDFTQSDGRPGYFARELRVYGREGEPCPACGTPIRQEVIGQRSSYYCPRCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A5Q4F3A8_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A5Q4F3A8_9GAMM)

HSP 1 Score: 172 bits (437), Expect = 9.870e-52
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            M+ ++VVGVGNIYASEAL+RAG+HP+R AGRVS+ R +RL AAIREVLA AIE GGTTLRDF  SDG PGYFR  L VYGR   PCPGCG P+RQ VIGQR+S++CP CQ
Sbjct:  161 MNARVVVGVGNIYASEALFRAGIHPRRPAGRVSLARMQRLAAAIREVLAAAIEAGGTTLRDFTDSDGRPGYFRQHLQVYGRADAPCPGCGAPLRQEVIGQRASYFCPRCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A6N0HTN1_9GAMM (Formamidopyrimidine-DNA glycosylase n=2 Tax=Gammaproteobacteria incertae sedis TaxID=118884 RepID=A0A6N0HTN1_9GAMM)

HSP 1 Score: 170 bits (430), Expect = 1.100e-50
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQH 111
            MDG++VVGVGNIYASE+L+RA +HP+ AAG++S TRY  L   I+EVL+EAI  GGTTLRDF  SDG+PGYF  QLNVYGRTGEPCP C  PI+Q  +GQRS+FYCP+CQH
Sbjct:  160 MDGKVVVGVGNIYASESLFRARIHPRTAAGKISRTRYLALTETIKEVLSEAITQGGTTLRDFTGSDGKPGYFTQQLNVYGRTGEPCPLCATPIKQLTLGQRSTFYCPSCQH 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: UPI0019067DFC (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Thiohalocapsa halophila TaxID=69359 RepID=UPI0019067DFC)

HSP 1 Score: 167 bits (424), Expect = 9.070e-50
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MD  +VVGVGNIYASEAL+RAG+HP R AGR+++ RYERL A+I+ VLA AI  GGT+LRDFV+ DG PGYF   L VYGR G PCPGCG P+RQ  IGQRSSFYCP CQ
Sbjct:  161 MDSHVVVGVGNIYASEALHRAGIHPHRPAGRIALPRYERLAASIKTVLAAAIAEGGTSLRDFVQEDGSPGYFARALQVYGRAGLPCPGCGEPVRQRRIGQRSSFYCPRCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A1D8K4G6_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidihalobacter aeolianus TaxID=2792603 RepID=A0A1D8K4G6_9GAMM)

HSP 1 Score: 167 bits (423), Expect = 1.280e-49
Identity = 74/110 (67.27%), Postives = 90/110 (81.82%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MDG++VVGVGNIYASE+L+RAG+ P+RAAGR++  RY+ L   +REVL EAI  GGTTLRDFV+ DG PGYFR+ LNVYGR GEPCP CG  IR+AV+ QR++FYC  CQ
Sbjct:  161 MDGRVVVGVGNIYASESLFRAGIDPRRAAGRIAAARYDLLAERVREVLTEAIAAGGTTLRDFVREDGRPGYFRMSLNVYGRAGEPCPVCGTAIREAVLAQRNTFYCTRCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A1A6C4B3_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidihalobacter prosperus TaxID=160660 RepID=A0A1A6C4B3_9GAMM)

HSP 1 Score: 167 bits (422), Expect = 1.820e-49
Identity = 75/110 (68.18%), Postives = 90/110 (81.82%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MDG++VVGVGNIYASE+L+RAG+ P+RAAGR++  R+ERL A +REVL EAIE GGTTLRDFV+ DG PGYFR+ L VYGR GE CP CG  IR  V+ QR++FYCP CQ
Sbjct:  161 MDGRVVVGVGNIYASESLFRAGIDPRRAAGRIAAARHERLAACVREVLVEAIESGGTTLRDFVREDGRPGYFRVNLRVYGRGGEACPQCGAVIRSLVLAQRNTFYCPDCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A831LZ33_9BACT (Formamidopyrimidine-DNA glycosylase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A831LZ33_9BACT)

HSP 1 Score: 166 bits (421), Expect = 2.570e-49
Identity = 76/110 (69.09%), Postives = 89/110 (80.91%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MDG++VVGVGNIYASE+L+ AG+HP+RAAGR+S  RY RL  +I+EVL  +I  GGTTLRDFV  DG+PGYF  QL VYGRTGEPCP C  PIRQ V GQRS++YCP CQ
Sbjct:  161 MDGKVVVGVGNIYASESLFLAGIHPERAAGRISRERYARLAQSIKEVLRASIRAGGTTLRDFVGGDGQPGYFAQQLRVYGRTGEPCPKCATPIRQIVTGQRSTYYCPHCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A523PEQ9_9PROT (Formamidopyrimidine-DNA glycosylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523PEQ9_9PROT)

HSP 1 Score: 166 bits (421), Expect = 2.570e-49
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQH 111
            MD  IVVG+GNIYASEALYRAG+HPKRAAGR+   RY RLV A+R+VL EA+  GGTTLRDF  SDG+PGYFR +L VYGR GEPC      IRQ VIGQRSSF+CP CQH
Sbjct:  161 MDAHIVVGIGNIYASEALYRAGIHPKRAAGRIGRERYGRLVMAVRDVLEEALAAGGTTLRDFANSDGKPGYFRRELKVYGRAGEPCDCRTGVIRQQVIGQRSSFFCPRCQH 271

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: A0A7C7QI34_9GAMM (Formamidopyrimidine-DNA glycosylase n=1 Tax=Chromatiales bacterium TaxID=2026725 RepID=A0A7C7QI34_9GAMM)

HSP 1 Score: 166 bits (421), Expect = 2.570e-49
Identity = 75/110 (68.18%), Postives = 87/110 (79.09%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MD ++VVGVGNIYA+EAL+RAG+HP RAAGR+S  RYERL  AIR+VL  AI  GGTTLRDF+  DG+PGYFR QL VYGR G PCP CG PIR   +GQR++ YCP CQ
Sbjct:  161 MDSKVVVGVGNIYANEALFRAGIHPARAAGRISRPRYERLAGAIRQVLRAAIRAGGTTLRDFLAEDGQPGYFRQQLRVYGRAGRPCPACGAPIRPLTLGQRATCYCPRCQ 270

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BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Match: UPI0007323E6C (bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Thiohalocapsa sp. ML1 TaxID=1431688 RepID=UPI0007323E6C)

HSP 1 Score: 166 bits (421), Expect = 2.570e-49
Identity = 76/110 (69.09%), Postives = 89/110 (80.91%), Query Frame = 0

Query:    1 MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAEAIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQRSSFYCPTCQ 110
            MD  +VVGVGNIYASEAL+RAG+HP R AGR+++ R+ERL A+I+ VLA AI  GGT+LRDFV+ +G PGYF   L VYGRTGEPCPGCG P+R   IGQRSSFYCP CQ
Sbjct:  161 MDSHVVVGVGNIYASEALHRAGIHPARPAGRIALLRFERLAASIKTVLAAAIAEGGTSLRDFVQENGNPGYFARALRVYGRTGEPCPGCGAPVRTRRIGQRSSFYCPRCQ 270

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig112779.2661.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7C1Y5X2_9GAMM	3.470e-52	71.82	Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammap...	[more]
A0A5Q4F3A8_9GAMM	9.870e-52	71.82	Formamidopyrimidine-DNA glycosylase n=1 Tax=Gammap...	[more]
A0A6N0HTN1_9GAMM	1.100e-50	69.37	Formamidopyrimidine-DNA glycosylase n=2 Tax=Gammap...	[more]
UPI0019067DFC	9.070e-50	70.00	bifunctional DNA-formamidopyrimidine glycosylase/D...	[more]
A0A1D8K4G6_9GAMM	1.280e-49	67.27	Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidih...	[more]
A0A1A6C4B3_9GAMM	1.820e-49	68.18	Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidih...	[more]
A0A831LZ33_9BACT	2.570e-49	69.09	Formamidopyrimidine-DNA glycosylase n=1 Tax=Bryoba...	[more]
A0A523PEQ9_9PROT	2.570e-49	71.17	Formamidopyrimidine-DNA glycosylase n=1 Tax=Proteo...	[more]
A0A7C7QI34_9GAMM	2.570e-49	68.18	Formamidopyrimidine-DNA glycosylase n=1 Tax=Chroma...	[more]
UPI0007323E6C	2.570e-49	69.09	bifunctional DNA-formamidopyrimidine glycosylase/D...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015886	DNA glycosylase/AP lyase, H2TH DNA-binding	SMART	SM01232	H2TH_2	coord: 1..63 e-value: 7.0E-19 score: 78.7
IPR015886	DNA glycosylase/AP lyase, H2TH DNA-binding	PFAM	PF06831	H2TH	coord: 1..61 e-value: 2.3E-19 score: 69.2
None	No IPR available	GENE3D	1.10.8.50		coord: 1..111 e-value: 1.2E-42 score: 147.0
None	No IPR available	PANTHER	PTHR22993:SF9	ENDONUCLEASE 8-LIKE 1	coord: 1..111
None	No IPR available	PANTHER	PTHR22993	FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE	coord: 1..111
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 59..110
IPR010663	Zinc finger, FPG/IleRS-type	PFAM	PF06827	zf-FPG_IleRS	coord: 83..111 e-value: 3.2E-10 score: 39.6
IPR015887	DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site	PROSITE	PS01242	ZF_FPG_1	coord: 86..110
IPR000214	Zinc finger, DNA glycosylase/AP lyase-type	PROSITE	PS51066	ZF_FPG_2	coord: 77..111 score: 13.854
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 1..63

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig112779	contig	M-pyrifera_M_contig112779:33..368 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male	2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig112779.2661.1	mRNA_M-pyrifera_M_contig112779.2661.1	Macrocystis pyrifera P11B4 male	mRNA	M-pyrifera_M_contig112779 6..368 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_M-pyrifera_M_contig112779.2661.1 ID=prot_M-pyrifera_M_contig112779.2661.1|Name=mRNA_M-pyrifera_M_contig112779.2661.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=112bp
MDGQIVVGVGNIYASEALYRAGVHPKRAAGRVSVTRYERLVAAIREVLAE
AIEVGGTTLRDFVKSDGEPGYFRLQLNVYGRTGEPCPGCGRPIRQAVIGQ
RSSFYCPTCQH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015886	DNA_glyclase/AP_lyase_DNA-bd
IPR010663	Znf_FPG/IleRS
IPR015887	DNA_glyclase_Znf_dom_DNA_BS
IPR000214	Znf_DNA_glyclase/AP_lyase
IPR010979	Ribosomal_S13-like_H2TH