mRNA_M-pyrifera_M_contig112772.2658.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112772.2658.1
Unique NamemRNA_M-pyrifera_M_contig112772.2658.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: F2UJ27_SALR5 (Folate gamma-glutamyl hydrolase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJ27_SALR5)

HSP 1 Score: 123 bits (309), Expect = 3.680e-32
Identity = 67/134 (50.00%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    1 DGADGSCFDVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQPSAEWADSAFVAAL 387
            DG+  SCF  FY +WLE++G RV  + Y  +   +A  +  +NG+LFTGGG SL  +T YYE A R++   L+       +PLWGTCMGFQLL IL A +++SVLEH+AFD+ED+SL L  S+E ADS  V A+
Sbjct:    3 DGSATSCFAAFYVKWLESSGVRVAVLRYDLDPDVMAEAIRGVNGVLFTGGGESLKPNTPYYEAANRIFKQVLDINDQGTFLPLWGTCMGFQLLTILAA-NNQSVLEHHAFDSEDISLPLLFSSEAADSRLVQAM 135          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A9V742_MONBE (Folate gamma-glutamyl hydrolase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V742_MONBE)

HSP 1 Score: 115 bits (287), Expect = 3.440e-27
Identity = 57/114 (50.00%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   16 SCFDVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLAL 342
            SCF+ FY +WLE++G +V  IPY+A++  L   +GS+NG+LFTGG L L +++ YY+TA ++      +       PLWGTCMGFQLL IL A ++ES L  NAFD+ED+SL L
Sbjct: 1704 SCFEAFYVQWLESSGLQVAIIPYSASDELLETIMGSVNGVLFTGGELGLQMNSTYYQTANKILQQVKAKNDAGTHFPLWGTCMGFQLLHILVA-NNESALSRNAFDSEDISLPL 1816          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A0L0G3K5_9EUKA (Folate gamma-glutamyl hydrolase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G3K5_9EUKA)

HSP 1 Score: 106 bits (264), Expect = 2.950e-25
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 1
Query:   16 SCFDVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQPSAEWADS 369
            S F  +Y+RWLE +GAR++ I Y A   EL     S+NG+L+TGG LSL   T YY+TA  LY+ A+         P+WGTCMGFQL+ I+ A D  SVL+H  +D++ + L L P+ E+A S
Sbjct:   31 SGFYDYYARWLEQSGARIVPIRYNAPREELDELFSSINGLLYTGGDLSLKFDTPYYKTAHYLYNKAIAANDEGDFFPIWGTCMGFQLISIMAAVD-YSVLDHGVYDSDGIMLPLVPT-EYASS 151          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A813A3V3_9DINO (Folate gamma-glutamyl hydrolase (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A3V3_9DINO)

HSP 1 Score: 106 bits (264), Expect = 4.870e-25
Identity = 61/123 (49.59%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    7 ADGSCFDVFYSRWLEAAGARVIGIPYTANET---ELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLY-------DGALERQVPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQ 345
            A GSCF   Y  WL AAGARV+GIP+ A +    +L   LGSLNG+LFTGGGLSL   T YY T   ++       D  +    PL GTCMGF+ L ILGAG + SVL+   FD+E L++ L+
Sbjct:   55 AGGSCFANLYELWLRAAGARVVGIPHDAFDNAKADLDTMLGSLNGVLFTGGGLSLAPDTAYYRTGHYIFQQVQAINDAGVH--FPLHGTCMGFEFLSILGAGGNASVLQPG-FDSEGLTVPLE 174          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A813GWX8_POLGL (Folate gamma-glutamyl hydrolase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GWX8_POLGL)

HSP 1 Score: 104 bits (260), Expect = 2.260e-24
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 1
Query:   16 SCFDVFYSRWLEAAGARVIGIPYTA---NETELAVFLGSLNGILFTGGGLSLG-LHTRYYETARRLYDGALE-----RQVPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQPSAEWADSAFV 378
            SCF   Y+ +++AAGAR +GIPY A   N   L   L SL+G+LF+GGG++L    + Y+ T   ++D         R  PL G CMGFQ L ILGAG D +VL+ +AFD+EDLSLAL+ + E   S +V
Sbjct:   55 SCFSSIYASFVQAAGARAVGIPYNALEANREVLEKLLESLDGVLFSGGGVNLSDTGSAYFRTGSFIFDWVKRTNDAGRYFPLRGHCMGFQFLSILGAGSDPAVLQSDAFDSEDLSLALEWAVEAPQSRWV 184          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A7S3D4K5_9EUKA (Folate gamma-glutamyl hydrolase n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D4K5_9EUKA)

HSP 1 Score: 104 bits (259), Expect = 2.300e-24
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   22 FDVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQ 345
            F   Y +W+E+AGA VI I Y A + EL   L S+N +LFTGGGL L     Y++TA+ +Y  A          PLWGTCMGFQLL IL AG+  SVLE + FD+E+L LAL+
Sbjct:   53 FSADYVKWVESAGAEVIPINYNATKAELDSLLTSVNAVLFTGGGLDLTPGHPYFDTAQYIYSAAKRMNDEGDFFPLWGTCMGFQLLSILAAGN-ASVLEGDVFDSENLPLALE 164          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A7S0FYX8_9DINO (Folate gamma-glutamyl hydrolase (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FYX8_9DINO)

HSP 1 Score: 93.6 bits (231), Expect = 1.540e-20
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = 1
Query:    1 DGADG--SCFDVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSL------GLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQ 345
            DG +G  SCF   Y +++EAAG RV  I Y A++ ++A    S+NG+ FTGG +++         ++Y   A  L++  +        +PLWGTCMGFQ L IL AGD  SVLE  AF+AEDLSL L+
Sbjct:    5 DGPEGGSSCFASLYVKYIEAAGGRVAPILYDASDDDIAQIFTSVNGLFFTGGVVNIRHAQESAAASQYLHAASLLFNMTVATNDAGVHMPLWGTCMGFQTLSILAAGD-ASVLETYAFEAEDLSLPLE 131          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A0L0G839_9EUKA (Folate gamma-glutamyl hydrolase n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G839_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 6.700e-19
Identity = 51/120 (42.50%), Postives = 70/120 (58.33%), Query Frame = 1
Query:   25 DVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLALQPSAEWADS 369
            DV+  ++LEAAGARVIGIPY   E E+      ++G+ F GG  SL   ++YY+TA  L+  A E        P+ G CMGFQLL +L +  D SVLEH  +D+  +   L+ + E  DS
Sbjct:   71 DVWAYKYLEAAGARVIGIPYNIPEAEVHQLFDQMHGVYFPGGDASLEYDSQYYKTANILFKRAKEANDAGIHFPILGICMGFQLLTVLQS-QDYSVLEHGVYDSHGVLFQLERTEETQDS 189          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A1X7SMP1_AMPQE (Folate gamma-glutamyl hydrolase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SMP1_AMPQE)

HSP 1 Score: 86.3 bits (212), Expect = 7.910e-19
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   34 YSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLAL 342
            Y +++E+AGARV+ I     + EL    GS+NG+LF GGG SL + + Y E A+ +++ A +        PLWGTC+GFQLLC+L +G +  +   ++FD+ED S+ L
Sbjct:   51 YVKYIESAGARVVPIINNITQDELKDLFGSINGVLFPGGGSSL-VESAYLEVAKTIFELAKQANDEGDYFPLWGTCLGFQLLCVLQSGTNHIL---SSFDSEDYSIPL 154          
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Match: A0A1X7TZG5_AMPQE (Folate gamma-glutamyl hydrolase n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TZG5_AMPQE)

HSP 1 Score: 86.3 bits (212), Expect = 9.360e-19
Identity = 45/108 (41.67%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   34 YSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGGGLSLGLHTRYYETARRLYDGALERQ-----VPLWGTCMGFQLLCILGAGDDESVLEHNAFDAEDLSLAL 342
            Y +++E+AGARV+ I     + EL    GS+NG+LF GGG SL + + Y E A+ +++ A +        PLWGTC+GFQLLC+L +G +  +   ++FD+ED S+ L
Sbjct:   45 YVKYIESAGARVVPIINNITQDELKDLFGSINGVLFPGGGSSL-VESAYLEVAKTIFELAKQANDEGDYFPLWGTCLGFQLLCVLQSGTNHIL---SSFDSEDYSIPL 148          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112772.2658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2UJ27_SALR53.680e-3250.00Folate gamma-glutamyl hydrolase n=1 Tax=Salpingoec... [more]
A9V742_MONBE3.440e-2750.00Folate gamma-glutamyl hydrolase n=1 Tax=Monosiga b... [more]
A0A0L0G3K5_9EUKA2.950e-2546.34Folate gamma-glutamyl hydrolase n=1 Tax=Sphaerofor... [more]
A0A813A3V3_9DINO4.870e-2549.59Folate gamma-glutamyl hydrolase (Fragment) n=1 Tax... [more]
A0A813GWX8_POLGL2.260e-2446.15Folate gamma-glutamyl hydrolase (Fragment) n=1 Tax... [more]
A0A7S3D4K5_9EUKA2.300e-2450.44Folate gamma-glutamyl hydrolase n=1 Tax=Palpitomon... [more]
A0A7S0FYX8_9DINO1.540e-2043.75Folate gamma-glutamyl hydrolase (Fragment) n=1 Tax... [more]
A0A0L0G839_9EUKA6.700e-1942.50Folate gamma-glutamyl hydrolase n=1 Tax=Sphaerofor... [more]
A0A1X7SMP1_AMPQE7.910e-1941.67Folate gamma-glutamyl hydrolase n=2 Tax=Amphimedon... [more]
A0A1X7TZG5_AMPQE9.360e-1941.67Folate gamma-glutamyl hydrolase n=2 Tax=Amphimedon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112772contigM-pyrifera_M_contig112772:41..427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score124.8
Seed ortholog evalue3e-26
Seed eggNOG ortholog946362.XP_004990815.1
Preferred nameGGH
KEGG rclassRC00064,RC00090
KEGG koko:K01307,ko:K15699
KEGG ReactionR04242
KEGG Pathwayko00790,ko01523,map00790,map01523
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0006082,GO:0006508,GO:0006575,GO:0006725,GO:0006732,GO:0006760,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009636,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010243,GO:0012505,GO:0016192,GO:0016787,GO:0019538,GO:0019752,GO:0030141,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032868,GO:0032940,GO:0034641,GO:0034722,GO:0034774,GO:0035578,GO:0035580,GO:0036230,GO:0042119,GO:0042221,GO:0042493,GO:0042558,GO:0042581,GO:0042582,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043434,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045471,GO:0046483,GO:0046677,GO:0046900,GO:0046903,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0060205,GO:0070011,GO:0070013,GO:0070820,GO:0071704,GO:0097305,GO:0097708,GO:0099503,GO:0140096,GO:1901360,GO:1901564,GO:1901652,GO:1901698,GO:1901700,GO:1904724
EggNOG free text desc.gamma-glutamyl-peptidase activity
EggNOG OGs39K9H@33154,KOG1559@1,KOG1559@2759
EC3.4.19.9
COG Functional cat.H
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.3724313-CDS-M-pyrifera_M_contig112772:40..4271622815641.3724313-CDS-M-pyrifera_M_contig112772:40..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112772 41..427 -
1692277500.941963-CDS-M-pyrifera_M_contig112772:40..4271692277500.941963-CDS-M-pyrifera_M_contig112772:40..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112772 41..427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112772.2658.1prot_M-pyrifera_M_contig112772.2658.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112772 41..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112772.2658.1

>prot_M-pyrifera_M_contig112772.2658.1 ID=prot_M-pyrifera_M_contig112772.2658.1|Name=mRNA_M-pyrifera_M_contig112772.2658.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
DGADGSCFDVFYSRWLEAAGARVIGIPYTANETELAVFLGSLNGILFTGG
GLSLGLHTRYYETARRLYDGALERQVPLWGTCMGFQLLCILGAGDDESVL
EHNAFDAEDLSLALQPSAEWADSAFVAAL
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mRNA from alignment at M-pyrifera_M_contig112772:41..427-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112772.2658.1 ID=mRNA_M-pyrifera_M_contig112772.2658.1|Name=mRNA_M-pyrifera_M_contig112772.2658.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig112772:41..427- (Macrocystis pyrifera P11B4 male)
GACGGCGCGGACGGGTCGTGTTTCGACGTGTTCTACTCCCGGTGGCTGGA GGCTGCGGGCGCGCGGGTGATTGGGATCCCGTACACCGCCAACGAGACGG AGCTGGCCGTGTTCCTGGGCTCCCTGAACGGGATCCTGTTCACGGGTGGT GGGCTCAGCCTGGGCTTGCACACGAGGTACTACGAGACGGCGAGGCGCCT GTATGACGGTGCGTTGGAGCGCCAGGTGCCTCTGTGGGGCACTTGCATGG GCTTCCAGCTGCTGTGCATCCTCGGGGCTGGGGATGACGAGAGCGTGCTG GAGCACAACGCGTTCGATGCGGAAGATTTGAGCCTGGCGCTGCAGCCCAG TGCGGAATGGGCCGATTCGGCATTTGTCGCAGCGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112772:41..427-

>mRNA_M-pyrifera_M_contig112772.2658.1 ID=mRNA_M-pyrifera_M_contig112772.2658.1|Name=mRNA_M-pyrifera_M_contig112772.2658.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig112772:41..427- (Macrocystis pyrifera P11B4 male)
GACGGCGCGGACGGGTCGTGTTTCGACGTGTTCTACTCCCGGTGGCTGGA
GGCTGCGGGCGCGCGGGTGATTGGGATCCCGTACACCGCCAACGAGACGG
AGCTGGCCGTGTTCCTGGGCTCCCTGAACGGGATCCTGTTCACGGGTGGT
GGGCTCAGCCTGGGCTTGCACACGAGGTACTACGAGACGGCGAGGCGCCT
GTATGACGGTGCGTTGGAGCGCCAGGTGCCTCTGTGGGGCACTTGCATGG
GCTTCCAGCTGCTGTGCATCCTCGGGGCTGGGGATGACGAGAGCGTGCTG
GAGCACAACGCGTTCGATGCGGAAGATTTGAGCCTGGCGCTGCAGCCCAG
TGCGGAATGGGCCGATTCGGCATTTGTCGCAGCGCTCGACGGCGCGGACG
GGTCGTGTTTCGACGTGTTCTACTCCCGGTGGCTGGAGGCTGCGGGCGCG
CGGGTGATTGGGATCCCGTACACCGCCAACGAGACGGAGCTGGCCGTGTT
CCTGGGCTCCCTGAACGGGATCCTGTTCACGGGTGGTGGGCTCAGCCTGG
GCTTGCACACGAGGTACTACGAGACGGCGAGGCGCCTGTATGACGGTGCG
TTGGAGCGCCAGGTGCCTCTGTGGGGCACTTGCATGGGCTTCCAGCTGCT
GTGCATCCTCGGGGCTGGGGATGACGAGAGCGTGCTGGAGCACAACGCGT
TCGATGCGGAAGATTTGAGCCTGGCGCTGCAGCCCAGTGCGGAATGGGCC
GATTCGGCATTTGTCGCAGCGCTC
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