mRNA_M-pyrifera_M_contig112767.2657.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A383D6Y0_9ZZZZ (RF_PROK_I domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383D6Y0_9ZZZZ) HSP 1 Score: 105 bits (263), Expect = 5.540e-28 Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 19 IRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
+++PR+EL +SFSRSSGPGGQNVN+VAT+ E+RF LE A W + TR RLA R + ++G+F++VS +FRSQGRN+ED I+
Sbjct: 1 MKIPREELEISFSRSSGPGGQNVNKVATRVEVRFHLESAAW--IAPATRVRLAALHPRRLNREGEFIMVSSRFRSQGRNIEDCIE 83
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A356F8U2_9BACT (Aminoacyl-tRNA hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356F8U2_9BACT) HSP 1 Score: 105 bits (262), Expect = 2.920e-27 Identity = 48/85 (56.47%), Postives = 66/85 (77.65%), Query Frame = 1
Query: 19 IRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
+++PR+EL +SFSRSSGPGGQNVN+VAT+ ++RF LE A W + TR RLA R + ++G+F+VVS +FRSQGRN+ED I+
Sbjct: 5 MKIPREELEISFSRSSGPGGQNVNKVATRVDVRFHLESAAW--IAPATRVRLAVLHPRRLNREGEFIVVSSRFRSQGRNIEDCIE 87
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A2D8MZ11_9BACT (Aminoacyl-tRNA hydrolase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D8MZ11_9BACT) HSP 1 Score: 103 bits (256), Expect = 2.130e-26 Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1
Query: 19 IRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
+ VPR+ L +SFSRSSGPGGQNVN+VAT+ E+RF+LE ADW+ + R RLA R + ++GDF++VS +FRSQ RN+ED I+
Sbjct: 1 MEVPRERLQVSFSRSSGPGGQNVNKVATRVEVRFQLESADWIPPL--IRSRLASLHXRRLNREGDFIIVSSRFRSQKRNLEDCIE 83
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A1X7UWY6_AMPQE (RF_PROK_I domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UWY6_AMPQE) HSP 1 Score: 96.7 bits (239), Expect = 3.260e-23 Identity = 44/83 (53.01%), Postives = 64/83 (77.11%), Query Frame = 1
Query: 25 VPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
VPRD+L + FSRSSGPGGQNVN+++TKAE+RF +++ADWL + +ERL + F + K G+ +V SQ +R+Q +N+EDAI+
Sbjct: 54 VPRDKLDIRFSRSSGPGGQNVNKLSTKAEVRFNVQEADWLP--DRVKERLKEMFGTKINKLGEIIVTSQVYRTQYQNLEDAIK 134
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A152A4S7_9MYCE (RF_PROK_I domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A4S7_9MYCE) HSP 1 Score: 95.5 bits (236), Expect = 3.430e-23 Identity = 45/88 (51.14%), Postives = 67/88 (76.14%), Query Frame = 1
Query: 1 LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVED 264
L F+++I VPRD+L L+FSRSSG GGQNVN+V TKAEIRF+L++A+W+ + +E L K +S+ + GDF+V S++ R Q +N++D
Sbjct: 7 LLFTSKIIVPRDKLALAFSRSSGAGGQNVNKVNTKAEIRFQLDNANWIP--DYVKENLKKSYSKNLNNDGDFIVTSERHREQKQNLKD 92
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: UPI001952C9A1 (peptidyl-tRNA hydrolase ICT1, mitochondrial isoform X2 n=3 Tax=Pseudocrenilabrinae TaxID=318546 RepID=UPI001952C9A1) HSP 1 Score: 95.5 bits (236), Expect = 4.570e-23 Identity = 43/91 (47.25%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 1 LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
LH T++ +P + LT+S+SRSSGPGGQ+VN+V+TKAE+RF ++ A+W+ E RE++ ++ +TK G+ +V S+ RSQ RN+ D IQ
Sbjct: 16 LHHETQVHIPVERLTISYSRSSGPGGQHVNKVSTKAEVRFHVQTAEWIP--EDVREKILEKNKTRITKAGELLVTSELSRSQQRNLSDCIQ 104
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: UPI000A2A894A (peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A894A) HSP 1 Score: 95.1 bits (235), Expect = 1.330e-22 Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 1
Query: 25 VPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAI 270
VP+D LT+ F+RSSGPGGQNVN+V TK EIRF +E ADW+ E RE+L K+ V K G+ V+ S +FRSQ +NV+DAI
Sbjct: 54 VPQDRLTIKFARSSGPGGQNVNKVNTKVEIRFHVESADWIP--EEVREKLLKRERNRVNKNGELVLTSTQFRSQLKNVKDAI 133
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A517ZLY3_9PLAN (Peptidyl-tRNA hydrolase ArfB n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZLY3_9PLAN) HSP 1 Score: 91.7 bits (226), Expect = 9.040e-22 Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query: 1 LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAI 270
L+ + I++P ELT +FSRSSGPGGQNVN++ TKA +R+ + ++ L EG RER K + R +T GDFV+ SQ+FR QGRNV D +
Sbjct: 2 LYVNQAIQIPLRELTFTFSRSSGPGGQNVNKLNTKATLRWGVANSPSLS--EGVRERFMKTYHRRLTTDGDFVMHSQRFRDQGRNVADCL 89
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A3Q1HIM6_ANATE (Mitochondrial ribosomal protein L58 n=2 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HIM6_ANATE) HSP 1 Score: 92.4 bits (228), Expect = 1.570e-21 Identity = 41/87 (47.13%), Postives = 64/87 (73.56%), Query Frame = 1
Query: 13 TRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
T++ +P D LT+S+SRSSGPGGQNVN+V+TKAE+RF ++ ADW+ E R+++ ++ + + K G+ +V S+ RSQ RN+ D +Q
Sbjct: 51 TQVHIPVDRLTVSYSRSSGPGGQNVNKVSTKAEVRFHVQTADWIP--EDVRQKVFEKNKKRINKAGELLVTSELSRSQQRNLSDCLQ 135
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Match: A0A4U5VQF2_COLLU (Peptidyl-tRNA hydrolase ICT1, mitochondrial n=1 Tax=Collichthys lucidus TaxID=240159 RepID=A0A4U5VQF2_COLLU) HSP 1 Score: 90.9 bits (224), Expect = 2.180e-21 Identity = 40/86 (46.51%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 16 RIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVVEGTRERLAKQFSRCVTKKGDFVVVSQKFRSQGRNVEDAIQ 273
++ +P + LT+S+SRSSGPGGQ+VN+V+T+AE+RF ++ ADW+ E R ++ ++ C+ K G+ +V SQ RSQ RN+ D IQ
Sbjct: 9 QVHIPVERLTVSYSRSSGPGGQHVNKVSTRAEVRFNVKTADWIP--EDVRRKIFEKNKNCINKAGELLVTSQLSRSQQRNLSDCIQ 92 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112767.2657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112767.2657.1 >prot_M-pyrifera_M_contig112767.2657.1 ID=prot_M-pyrifera_M_contig112767.2657.1|Name=mRNA_M-pyrifera_M_contig112767.2657.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=91bp LHFSTRIRVPRDELTLSFSRSSGPGGQNVNRVATKAEIRFRLEDADWLDVback to top mRNA from alignment at M-pyrifera_M_contig112767:1..273- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112767.2657.1 ID=mRNA_M-pyrifera_M_contig112767.2657.1|Name=mRNA_M-pyrifera_M_contig112767.2657.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=273bp|location=Sequence derived from alignment at M-pyrifera_M_contig112767:1..273- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112767:1..273- >mRNA_M-pyrifera_M_contig112767.2657.1 ID=mRNA_M-pyrifera_M_contig112767.2657.1|Name=mRNA_M-pyrifera_M_contig112767.2657.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig112767:1..273- (Macrocystis pyrifera P11B4 male)back to top |