mRNA_M-pyrifera_M_contig101250.265.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101250.265.1
Unique NamemRNA_M-pyrifera_M_contig101250.265.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101250.265.1 vs. uniprot
Match: A0A5A8EJ33_CAFRO (Hypothetical protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EJ33_CAFRO)

HSP 1 Score: 127 bits (318), Expect = 2.430e-33
Identity = 58/125 (46.40%), Postives = 84/125 (67.20%), Query Frame = 1 
Query:   10 AGEATTADWLSGDSWGLEGDGLRVLTISHIVTEGQGTWIFATDELFLGVGLIFFAVANFAQKK--FPAWFSWYTVVLGGLCVLSFFVEVARFGSWMLFSEIGGLLLAVIGFILFPIWIVILACYL 378
            AGE    DWL+G SW L  D LR +T+S+I  +GQ TW+FA DEL LG+ L+  AV   +++    PAWFSW +VV+G + +++F +E+ R G+W   S + G+  A +GFILFPIW++ + CYL
Sbjct:  132 AGERGVTDWLTGPSWNLHADQLRSITLSYIQQQGQFTWLFAMDELLLGIALLAAAVLGLSRRPGLMPAWFSWLSVVIGVIAIINFGLELGRLGAWQTLSLVAGITAAAVGFILFPIWLIAVGCYL 256
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BLAST of mRNA_M-pyrifera_M_contig101250.265.1 vs. uniprot
Match: A0A812YU05_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812YU05_9DINO)

HSP 1 Score: 107 bits (268), Expect = 7.890e-26
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 1 
Query:    1 LQFAGEATTADWLSGDSWGLEGDGLRVLTISHIVTEGQGTWIFATDELFLGVGLIFFAVANFAQKKFPAWFSWYTVVLGGLCVLSFFVEVARFGSWMLFSEIGGLLLAVIGFILFPIWIVILACY 375
            L  AG AT +DW+   S+ LE   LR LT++++V  G  TW+FA DEL LGVGL+  +   ++  + P W +    V G L +++FF+EVARFG+W L S I GL+   IGFI+ P+W++ L  Y
Sbjct:  124 LVAAGRATVSDWIYR-SFTLEPSDLRALTLANLVARGSNTWLFALDELLLGVGLLTISCLVYSVGQLPRWVAHVGTVGGILGIINFFIEVARFGNWALLSVIAGLIAGTIGFIILPVWLIGLGLY 247
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101250.265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5A8EJ33_CAFRO2.430e-3346.40Hypothetical protein n=2 Tax=Cafeteria roenbergens... [more]
A0A812YU05_9DINO7.890e-2644.00Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101250contigM-pyrifera_M_contig101250:147..527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.1325939-CDS-M-pyrifera_M_contig101250:146..5271622815510.1325939-CDS-M-pyrifera_M_contig101250:146..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101250 147..527 -
1692277443.9615-CDS-M-pyrifera_M_contig101250:146..5271692277443.9615-CDS-M-pyrifera_M_contig101250:146..527Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101250 147..527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101250.265.1prot_M-pyrifera_M_contig101250.265.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101250 147..527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101250.265.1

>prot_M-pyrifera_M_contig101250.265.1 ID=prot_M-pyrifera_M_contig101250.265.1|Name=mRNA_M-pyrifera_M_contig101250.265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
LQFAGEATTADWLSGDSWGLEGDGLRVLTISHIVTEGQGTWIFATDELFL
GVGLIFFAVANFAQKKFPAWFSWYTVVLGGLCVLSFFVEVARFGSWMLFS
EIGGLLLAVIGFILFPIWIVILACYLP
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mRNA from alignment at M-pyrifera_M_contig101250:147..527-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101250.265.1 ID=mRNA_M-pyrifera_M_contig101250.265.1|Name=mRNA_M-pyrifera_M_contig101250.265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig101250:147..527- (Macrocystis pyrifera P11B4 male)
TTGCAGTTCGCCGGGGAGGCCACGACAGCGGACTGGCTCTCTGGGGACTC
CTGGGGTCTGGAAGGGGACGGTCTGCGTGTGCTCACGATTTCGCACATTG
TCACAGAGGGGCAAGGGACGTGGATCTTCGCAACGGATGAACTCTTTTTG
GGCGTCGGTCTCATCTTCTTCGCAGTGGCAAACTTTGCCCAGAAAAAGTT
CCCGGCCTGGTTTTCCTGGTACACCGTGGTGCTGGGGGGGCTCTGCGTAC
TCTCCTTCTTCGTGGAAGTCGCTCGTTTCGGCTCCTGGATGCTCTTCTCC
GAAATCGGAGGTCTTCTCCTCGCCGTCATCGGGTTCATCCTATTCCCCAT
CTGGATCGTCATCCTAGCGTGCTACCTCCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101250:147..527-

>mRNA_M-pyrifera_M_contig101250.265.1 ID=mRNA_M-pyrifera_M_contig101250.265.1|Name=mRNA_M-pyrifera_M_contig101250.265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig101250:147..527- (Macrocystis pyrifera P11B4 male)
TTGCAGTTCGCCGGGGAGGCCACGACAGCGGACTGGCTCTCTGGGGACTC
CTGGGGTCTGGAAGGGGACGGTCTGCGTGTGCTCACGATTTCGCACATTG
TCACAGAGGGGCAAGGGACGTGGATCTTCGCAACGGATGAACTCTTTTTG
GGCGTCGGTCTCATCTTCTTCGCAGTGGCAAACTTTGCCCAGAAAAAGTT
CCCGGCCTGGTTTTCCTGGTACACCGTGGTGCTGGGGGGGCTCTGCGTAC
TCTCCTTCTTCGTGGAAGTCGCTCGTTTCGGCTCCTGGATGCTCTTCTCC
GAAATCGGAGGTCTTCTCCTCGCCGTCATCGGGTTCATCCTATTCCCCAT
CTGGATCGTCATCCTAGCGTGCTACCTCCCATTGCAGTTCGCCGGGGAGG
CCACGACAGCGGACTGGCTCTCTGGGGACTCCTGGGGTCTGGAAGGGGAC
GGTCTGCGTGTGCTCACGATTTCGCACATTGTCACAGAGGGGCAAGGGAC
GTGGATCTTCGCAACGGATGAACTCTTTTTGGGCGTCGGTCTCATCTTCT
TCGCAGTGGCAAACTTTGCCCAGAAAAAGTTCCCGGCCTGGTTTTCCTGG
TACACCGTGGTGCTGGGGGGGCTCTGCGTACTCTCCTTCTTCGTGGAAGT
CGCTCGTTTCGGCTCCTGGATGCTCTTCTCCGAAATCGGAGGTCTTCTCC
TCGCCGTCATCGGGTTCATCCTATTCCCCATCTGGATCGTCATCCTAGCG
TGCTACCTCCCA
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