mRNA_M-pyrifera_M_contig112717.2642.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112717.2642.1
Unique NamemRNA_M-pyrifera_M_contig112717.2642.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A6U1UND0_9EUKA (Histone H2B n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1UND0_9EUKA)

HSP 1 Score: 180 bits (457), Expect = 2.340e-56
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1 
Query:   13 MPKKPASKKP--VARKTSKSASKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNS 381
            MPK  A KKP   A   +K+  K++ D  +RKKPNTSSYS+YIYKVLKQVHPDTGIS+KAM+VMDSFVHDIFERLA+EAGRLARYN +HTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNS
Sbjct:    1 MPK-AAGKKPRSTAEAKAKAPKKAASDKSKRKKPNTSSYSSYIYKVLKQVHPDTGISKKAMVVMDSFVHDIFERLATEAGRLARYNGKHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNS 124
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A384C8J3_URSMA (Histone H2B n=4 Tax=Carnivora TaxID=33554 RepID=A0A384C8J3_URSMA)

HSP 1 Score: 157 bits (396), Expect = 4.140e-47
Identity = 86/120 (71.67%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:   25 PASKKPVARKTSKSA-SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNS 381
            PA   P  +K SK A +K+ KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFER+A EA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY S
Sbjct:    4 PAKSAPAPKKGSKKAVTKAQKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 123
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A6D2WU02_PANTR (Histone H2B n=2 Tax=Pan troglodytes TaxID=9598 RepID=A0A6D2WU02_PANTR)

HSP 1 Score: 157 bits (396), Expect = 4.270e-47
Identity = 88/122 (72.13%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:   25 PASKKPVARKTSKSA--SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            PA   P  +K SK A      KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFERLASEA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY SS
Sbjct:    4 PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERLASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A6B2LNY1_9EUKA (Histone H2B n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LNY1_9EUKA)

HSP 1 Score: 157 bits (397), Expect = 5.790e-47
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 1 
Query:  109 NTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            N +SYST+IYKVLKQVHPDTGIS KAM +M+SFV DIFER+A+EAGRLARYN RHTITSREIQT+VRLILPGELAKHAVSEGTKAVTKYN+S
Sbjct:   49 NYNSYSTFIYKVLKQVHPDTGISNKAMAIMNSFVADIFERIANEAGRLARYNGRHTITSREIQTAVRLILPGELAKHAVSEGTKAVTKYNNS 140
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A091EER6_FUKDA (Histone H2B n=1 Tax=Fukomys damarensis TaxID=885580 RepID=A0A091EER6_FUKDA)

HSP 1 Score: 156 bits (395), Expect = 5.870e-47
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:   40 PVARKTSKSA-SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            P  +K SK A +K+ KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFER+A EA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY SS
Sbjct:    9 PSPKKDSKKAVTKAQKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A2K6NGT6_RHIRO (Histone H2B n=2 Tax=Rhinopithecus TaxID=542827 RepID=A0A2K6NGT6_RHIRO)

HSP 1 Score: 156 bits (395), Expect = 6.060e-47
Identity = 87/122 (71.31%), Postives = 98/122 (80.33%), Query Frame = 1 
Query:   25 PASKKPVARKTSKSA--SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            PA   P  +K SK A  +   KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFER+ASEA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY SS
Sbjct:    4 PAKSAPAPKKGSKKAVTNAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A0G4IJD9_PLABS (Histone H2B n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4IJD9_PLABS)

HSP 1 Score: 156 bits (394), Expect = 7.830e-47
Identity = 89/124 (71.77%), Postives = 101/124 (81.45%), Query Frame = 1 
Query:   16 PKKPASKKPVARKTSKSASKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSSS 387
            PKK  S    A KT+K  SK SK  K+R      SY+TYIYKVLKQVHPDTGISR+AM +M+SF++DIFER+A EAGRLARYNS+ T++SREIQTSVRLILPGELAKHAVSEGTKAVTKY  SS
Sbjct:    3 PKKAPSATKAAGKTAKQPSKGSKRHKKR----VESYATYIYKVLKQVHPDTGISRRAMSIMNSFINDIFERIALEAGRLARYNSKSTLSSREIQTSVRLILPGELAKHAVSEGTKAVTKYTQSS 122
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: A0A3Q2LQZ7_HORSE (Histone H2B n=6 Tax=Boreoeutheria TaxID=1437010 RepID=A0A3Q2LQZ7_HORSE)

HSP 1 Score: 156 bits (394), Expect = 8.600e-47
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:   25 PASKKPVARKTSKSA--SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            PA   PV +K SK A      KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFER+A EA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY SS
Sbjct:    4 PAKSAPVPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
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BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: H2B1F_MOUSE (Histone H2B type 1-F/J/L n=18 Tax=Euteleostomi TaxID=117571 RepID=H2B1F_MOUSE)

HSP 1 Score: 156 bits (394), Expect = 8.600e-47
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:   25 PASKKPVARKTSKSA--SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            PA   P  +K SK A      KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFER+ASEA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY SS
Sbjct:    4 PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Match: Q8CBB6_MOUSE (Histone H2B n=8 Tax=Boreoeutheria TaxID=1437010 RepID=Q8CBB6_MOUSE)

HSP 1 Score: 156 bits (394), Expect = 1.100e-46
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:   25 PASKKPVARKTSKSA--SKSSKDGKRRKKPNTSSYSTYIYKVLKQVHPDTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRLILPGELAKHAVSEGTKAVTKYNSS 384
            PA   P  +K SK A      KDGK+RK+    SYS Y+YKVLKQVHPDTGIS KAM +M+SFV+DIFER+ASEA RLA YN R TITSREIQT+VRL+LPGELAKHAVSEGTKAVTKY SS
Sbjct:    4 PAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112717.2642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U1UND0_9EUKA2.340e-5680.00Histone H2B n=1 Tax=Vannella sp. CB-2014 TaxID=148... [more]
A0A384C8J3_URSMA4.140e-4771.67Histone H2B n=4 Tax=Carnivora TaxID=33554 RepID=A0... [more]
A0A6D2WU02_PANTR4.270e-4772.13Histone H2B n=2 Tax=Pan troglodytes TaxID=9598 Rep... [more]
A0A6B2LNY1_9EUKA5.790e-4785.87Histone H2B n=1 Tax=Arcella intermedia TaxID=19638... [more]
A0A091EER6_FUKDA5.870e-4773.28Histone H2B n=1 Tax=Fukomys damarensis TaxID=88558... [more]
A0A2K6NGT6_RHIRO6.060e-4771.31Histone H2B n=2 Tax=Rhinopithecus TaxID=542827 Rep... [more]
A0A0G4IJD9_PLABS7.830e-4771.77Histone H2B n=2 Tax=Plasmodiophoridae TaxID=37358 ... [more]
A0A3Q2LQZ7_HORSE8.600e-4771.31Histone H2B n=6 Tax=Boreoeutheria TaxID=1437010 Re... [more]
H2B1F_MOUSE8.600e-4771.31Histone H2B type 1-F/J/L n=18 Tax=Euteleostomi Tax... [more]
Q8CBB6_MOUSE1.100e-4671.31Histone H2B n=8 Tax=Boreoeutheria TaxID=1437010 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112717contigM-pyrifera_M_contig112717:144..533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score159.5
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog29073.XP_008691201.1
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0002227,GO:0002251,GO:0002376,GO:0002385,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0016043,GO:0019730,GO:0019731,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0034622,GO:0034728,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0050830,GO:0050896,GO:0051276,GO:0051704,GO:0051707,GO:0061844,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:0098542,GO:1901363
EggNOG free text desc.Histone H2B type 1-K-like
EggNOG OGs3A13S@33154,3BQ3S@33208,3D6I0@33213,3EVAQ@33554,3JGNB@40674,48DZ6@7711,49AYA@7742,KOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelCarnivora
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size390
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.68086-CDS-M-pyrifera_M_contig112717:143..5211622815640.68086-CDS-M-pyrifera_M_contig112717:143..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112717 144..521 -
1692277500.6691415-CDS-M-pyrifera_M_contig112717:143..5211692277500.6691415-CDS-M-pyrifera_M_contig112717:143..521Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112717 144..521 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6971648-UTR-M-pyrifera_M_contig112717:521..5331622815640.6971648-UTR-M-pyrifera_M_contig112717:521..533Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112717 522..533 -
1692277500.6811147-UTR-M-pyrifera_M_contig112717:521..5331692277500.6811147-UTR-M-pyrifera_M_contig112717:521..533Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112717 522..533 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112717.2642.1prot_M-pyrifera_M_contig112717.2642.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112717 144..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112717.2642.1

>prot_M-pyrifera_M_contig112717.2642.1 ID=prot_M-pyrifera_M_contig112717.2642.1|Name=mRNA_M-pyrifera_M_contig112717.2642.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp
MPKKPASKKPVARKTSKSASKSSKDGKRRKKPNTSSYSTYIYKVLKQVHP
DTGISRKAMIVMDSFVHDIFERLASEAGRLARYNSRHTITSREIQTSVRL
ILPGELAKHAVSEGTKAVTKYNSSS*
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mRNA from alignment at M-pyrifera_M_contig112717:144..533-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112717.2642.1 ID=mRNA_M-pyrifera_M_contig112717.2642.1|Name=mRNA_M-pyrifera_M_contig112717.2642.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=390bp|location=Sequence derived from alignment at M-pyrifera_M_contig112717:144..533- (Macrocystis pyrifera P11B4 male)
GAAGCAGTCATCATGCCCAAGAAGCCCGCATCGAAGAAGCCGGTCGCCCG
CAAGACCTCCAAGTCTGCCTCCAAGAGCAGCAAGGACGGCAAGAGGAGGA
AGAAGCCCAACACCTCTTCCTACTCGACCTACATCTACAAGGTGCTCAAG
CAGGTTCACCCCGACACTGGCATCTCCCGCAAGGCTATGATCGTCATGGA
CTCCTTCGTCCACGACATCTTCGAGCGCCTCGCCTCTGAGGCTGGTCGCC
TGGCTCGCTACAACTCGCGCCACACCATCACCTCTCGCGAGATTCAGACT
TCGGTCCGTCTCATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTGTCTGA
GGGCACCAAGGCCGTGACCAAGTACAACTCCAGCTCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112717:144..533-

>mRNA_M-pyrifera_M_contig112717.2642.1 ID=mRNA_M-pyrifera_M_contig112717.2642.1|Name=mRNA_M-pyrifera_M_contig112717.2642.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig112717:144..533- (Macrocystis pyrifera P11B4 male)
ATGCCCAAGAAGCCCGCATCGAAGAAGCCGGTCGCCCGCAAGACCTCCAA
GTCTGCCTCCAAGAGCAGCAAGGACGGCAAGAGGAGGAAGAAGCCCAACA
CCTCTTCCTACTCGACCTACATCTACAAGGTGCTCAAGCAGGTTCACCCC
GACACTGGCATCTCCCGCAAGGCTATGATCGTCATGGACTCCTTCGTCCA
CGACATCTTCGAGCGCCTCGCCTCTGAGGCTGGTCGCCTGGCTCGCTACA
ACTCGCGCCACACCATCACCTCTCGCGAGATTCAGACTTCGGTCCGTCTC
ATCCTTCCCGGAGAGCTCGCCAAGCACGCCGTGTCTGAGGGCACCAAGGC
CGTGACCAAGTACAACTCCAGCTCTTAAATGCCCAAGAAGCCCGCATCGA
AGAAGCCGGTCGCCCGCAAGACCTCCAAGTCTGCCTCCAAGAGCAGCAAG
GACGGCAAGAGGAGGAAGAAGCCCAACACCTCTTCCTACTCGACCTACAT
CTACAAGGTGCTCAAGCAGGTTCACCCCGACACTGGCATCTCCCGCAAGG
CTATGATCGTCATGGACTCCTTCGTCCACGACATCTTCGAGCGCCTCGCC
TCTGAGGCTGGTCGCCTGGCTCGCTACAACTCGCGCCACACCATCACCTC
TCGCGAGATTCAGACTTCGGTCCGTCTCATCCTTCCCGGAGAGCTCGCCA
AGCACGCCGTGTCTGAGGGCACCAAGGCCGTGACCAAGTACAACTCCAGC
TCTTAA
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