prot_M-pyrifera_M_contig112694.2639.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig112694.2639.1
Unique Nameprot_M-pyrifera_M_contig112694.2639.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length54
Homology
BLAST of mRNA_M-pyrifera_M_contig112694.2639.1 vs. uniprot
Match: A0A6H5JKS8_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKS8_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.260e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    1 EEQGSARRFIWHTMRRLETLFRVAWMINLLLFLRNGKYATPVDRLVRMRMVSE 53
            E+ G ARR  WH + RLETLFR+AWM+NLLLFL++GKYATPVDRLVRMRMV +
Sbjct:  232 EDAGRARRVAWHVLGRLETLFRLAWMVNLLLFLKSGKYATPVDRLVRMRMVHD 284          
BLAST of mRNA_M-pyrifera_M_contig112694.2639.1 vs. uniprot
Match: W7TYI4_9STRA (Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYI4_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.250e-5
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 0
Query:    4 GSARRFIWHTMRRLETLFRVAWMINLLLFLRNGKYATPVDRLVRMRMV 51
            G  +R  +  + R E+LFR+AW+IN L+FLR G Y + + RLV MR+V
Sbjct:  252 GQWKRRAYRALTRAESLFRLAWLINFLVFLRVGSYPSLLQRLVGMRLV 299          
BLAST of mRNA_M-pyrifera_M_contig112694.2639.1 vs. uniprot
Match: A0A4D9D9T6_9STRA (Pex2_Pex12 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9T6_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 7.950e-5
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 0
Query:    4 GSARRFIWHTMRRLETLFRVAWMINLLLFLRNGKYATPVDRLVRMRMV 51
            G  +R  +  + R E+LFR+AW++N L+FLR G Y + + RLV MR+V
Sbjct:  257 GQWKRRAYRALTRAESLFRLAWLLNFLVFLRVGSYPSLLQRLVGMRLV 304          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112694.2639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JKS8_9PHAE3.260e-1873.58RING-type domain-containing protein n=2 Tax=Ectoca... [more]
W7TYI4_9STRA4.250e-547.92Peroxin-2 n=1 Tax=Nannochloropsis gaditana TaxID=7... [more]
A0A4D9D9T6_9STRA7.950e-545.83Pex2_Pex12 domain-containing protein n=1 Tax=Nanno... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006845Pex, N-terminalPFAMPF04757Pex2_Pex12coord: 5..52
e-value: 5.1E-7
score: 29.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 41..54
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112694contigM-pyrifera_M_contig112694:295..456 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112694.2639.1mRNA_M-pyrifera_M_contig112694.2639.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig112694 295..456 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig112694.2639.1 ID=prot_M-pyrifera_M_contig112694.2639.1|Name=mRNA_M-pyrifera_M_contig112694.2639.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
EEQGSARRFIWHTMRRLETLFRVAWMINLLLFLRNGKYATPVDRLVRMRM
VSEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006845Pex_N