mRNA_M-pyrifera_M_contig112644.2638.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112644.2638.1
Unique NamemRNA_M-pyrifera_M_contig112644.2638.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112644.2638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112644contigM-pyrifera_M_contig112644:51..461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size411
Cds size411
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.5319939-CDS-M-pyrifera_M_contig112644:50..4611622815640.5319939-CDS-M-pyrifera_M_contig112644:50..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112644 51..461 +
1692277500.6183639-CDS-M-pyrifera_M_contig112644:50..4611692277500.6183639-CDS-M-pyrifera_M_contig112644:50..461Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112644 51..461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112644.2638.1prot_M-pyrifera_M_contig112644.2638.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112644 51..461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112644.2638.1

>prot_M-pyrifera_M_contig112644.2638.1 ID=prot_M-pyrifera_M_contig112644.2638.1|Name=mRNA_M-pyrifera_M_contig112644.2638.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MNQSDKSKVWSAVALALVYLSIDFLFITQGSHLELPSPINIGKTLADDRA
TDRYGASMYGLIALLPTYLFYTYICKKAVKKSSYWQFRYPNLFDLSLSPS
ESFDRKLQAVAVVLAFIAPLYVSGHLGLKYLKGRALV
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mRNA from alignment at M-pyrifera_M_contig112644:51..461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112644.2638.1 ID=mRNA_M-pyrifera_M_contig112644.2638.1|Name=mRNA_M-pyrifera_M_contig112644.2638.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig112644:51..461+ (Macrocystis pyrifera P11B4 male)
ATGAATCAATCTGACAAGAGTAAGGTGTGGTCTGCAGTCGCGTTGGCACT
TGTATATCTGAGTATTGATTTTTTATTTATCACTCAAGGCTCGCACCTCG
AACTTCCAAGTCCGATTAACATCGGGAAGACTCTGGCGGATGACCGCGCA
ACTGATCGATATGGGGCGAGCATGTATGGTCTCATCGCATTGTTACCGAC
ATATCTGTTCTATACTTATATCTGCAAAAAAGCAGTGAAGAAAAGCTCTT
ATTGGCAATTCAGGTATCCGAATCTGTTTGATCTTTCTTTATCTCCGTCG
GAGTCGTTCGATCGAAAACTACAAGCGGTAGCAGTTGTTCTGGCCTTTAT
AGCGCCGCTATATGTATCCGGTCACTTGGGGCTGAAATATCTGAAAGGAC
GAGCGCTCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112644:51..461+

>mRNA_M-pyrifera_M_contig112644.2638.1 ID=mRNA_M-pyrifera_M_contig112644.2638.1|Name=mRNA_M-pyrifera_M_contig112644.2638.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig112644:51..461+ (Macrocystis pyrifera P11B4 male)
ATGAATCAATCTGACAAGAGTAAGGTGTGGTCTGCAGTCGCGTTGGCACT
TGTATATCTGAGTATTGATTTTTTATTTATCACTCAAGGCTCGCACCTCG
AACTTCCAAGTCCGATTAACATCGGGAAGACTCTGGCGGATGACCGCGCA
ACTGATCGATATGGGGCGAGCATGTATGGTCTCATCGCATTGTTACCGAC
ATATCTGTTCTATACTTATATCTGCAAAAAAGCAGTGAAGAAAAGCTCTT
ATTGGCAATTCAGGTATCCGAATCTGTTTGATCTTTCTTTATCTCCGTCG
GAGTCGTTCGATCGAAAACTACAAGCGGTAGCAGTTGTTCTGGCCTTTAT
AGCGCCGCTATATGTATCCGGTCACTTGGGGCTGAAATATCTGAAAGGAC
GAGCGCTCGTCATGAATCAATCTGACAAGAGTAAGGTGTGGTCTGCAGTC
GCGTTGGCACTTGTATATCTGAGTATTGATTTTTTATTTATCACTCAAGG
CTCGCACCTCGAACTTCCAAGTCCGATTAACATCGGGAAGACTCTGGCGG
ATGACCGCGCAACTGATCGATATGGGGCGAGCATGTATGGTCTCATCGCA
TTGTTACCGACATATCTGTTCTATACTTATATCTGCAAAAAAGCAGTGAA
GAAAAGCTCTTATTGGCAATTCAGGTATCCGAATCTGTTTGATCTTTCTT
TATCTCCGTCGGAGTCGTTCGATCGAAAACTACAAGCGGTAGCAGTTGTT
CTGGCCTTTATAGCGCCGCTATATGTATCCGGTCACTTGGGGCTGAAATA
TCTGAAAGGACGAGCGCTCGTC
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