mRNA_M-pyrifera_M_contig112634.2637.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112634.2637.1
Unique NamemRNA_M-pyrifera_M_contig112634.2637.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A2D8LV15_9ACTN (Fe-S cluster assembly ATPase SufC n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D8LV15_9ACTN)

HSP 1 Score: 199 bits (505), Expect = 7.270e-62
Identity = 106/128 (82.81%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPLA 384
            DLSGGEKKRNETLQLGVLRP FAILDELDSGLDVDALR+VS RVE+ T+E GLGVLAITHYSRLFEQL+PDVVHVFA GRIQE+GG ELATELE TGYERWV     +A A ASA  LPDDPFADPLA
Sbjct:  139 DLSGGEKKRNETLQLGVLRPTFAILDELDSGLDVDALRMVSQRVEEETQEHGLGVLAITHYSRLFEQLKPDVVHVFADGRIQESGGPELATELEETGYERWV-----TAPAAASAG-LPDDPFADPLA 260          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A6B1AXW1_9ACTN (Fe-S cluster assembly ATPase SufC n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AXW1_9ACTN)

HSP 1 Score: 186 bits (473), Expect = 6.090e-57
Identity = 97/124 (78.23%), Postives = 103/124 (83.06%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFA 372
            DLSGGEKKRNETLQLGVLRPRFAILDELDSGLD DALRLV  RVE ATEED +GVLAITHYSRLFEQLRPD VHVFA GRIQ+TGGAELA ELE TGYERW +   P+     S + L +DPFA
Sbjct:  139 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDFDALRLVGARVEAATEEDSVGVLAITHYSRLFEQLRPDTVHVFAGGRIQQTGGAELAQELEDTGYERWSDSPPPTT----SGSKLGEDPFA 258          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A6B0WJL6_9ACTN (Fe-S cluster assembly ATPase SufC n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B0WJL6_9ACTN)

HSP 1 Score: 172 bits (436), Expect = 2.460e-51
Identity = 89/126 (70.63%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADP 378
            DLSGGE+KRNE LQLGVL+P FA++DELDSGLDVDALRLV+GR+E+ATE DGLGVLAITHYSR+F  LRPD VHVFA GRIQE+GG+ELA ELE+ GYERW   A P  +  A A      PF DP
Sbjct:  138 DLSGGERKRNEALQLGVLKPAFAVIDELDSGLDVDALRLVAGRIEEATEHDGLGVLAITHYSRVFAHLRPDSVHVFAGGRIQESGGSELADELEAEGYERWTGTA-PQPDPDAGAT-----PFTDP 257          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A7V9SPE2_9ACTN (Fe-S cluster assembly ATPase SufC n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9SPE2_9ACTN)

HSP 1 Score: 170 bits (431), Expect = 1.180e-50
Identity = 92/128 (71.88%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPLA 384
            DLSGGE+KRNETLQLGVLRPRFAILDELDSGLDVDALR V+ R+E AT ED LGVLAITHYSRL  +LRPDVVHV A GRI  TGG ELA ELE TGY  +VEP   +    A      DDPFADP A
Sbjct:  140 DLSGGERKRNETLQLGVLRPRFAILDELDSGLDVDALRDVARRIEAATHEDNLGVLAITHYSRLLTELRPDVVHVLAGGRIVATGGPELAQELEETGYAGYVEPDPTAIRGGA------DDPFADPFA 261          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A6I3BZ12_9ACTN (Fe-S cluster assembly ATPase SufC n=2 Tax=root TaxID=1 RepID=A0A6I3BZ12_9ACTN)

HSP 1 Score: 169 bits (428), Expect = 3.760e-50
Identity = 89/128 (69.53%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPLA 384
            D SGGEKKRNETLQL VL+P+FAILDELDSGLDVDALRL S RVE AT E GLGVLAITHY RL ++LRPD VHV A G IQ TGG ELA ELE TGY +W+E    +     S A   DDPFADP A
Sbjct:  140 DFSGGEKKRNETLQLAVLQPKFAILDELDSGLDVDALRLCSRRVEAATHETGLGVLAITHYKRLLDELRPDFVHVLAKGAIQVTGGLELAEELERTGYSQWIE--RDTVETSVSIAGFGDDPFADPFA 265          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A6B1EET4_9ACTN (Fe-S cluster assembly ATPase SufC n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EET4_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 1.510e-49
Identity = 87/127 (68.50%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPL 381
            DLSGGE+KRNE LQLGVL+P FA++DELDSGLDVDALR V  R+E ATE DGLGVLAITH SR+F+ LRPD VHVFA GRIQE+GG ELA ELE+ GYERW+ PAS   +A A+       PF DP 
Sbjct:  138 DLSGGERKRNEALQLGVLKPAFAVVDELDSGLDVDALRFVGDRIEDATEHDGLGVLAITHSSRVFDHLRPDAVHVFAGGRIQESGGPELAEELEADGYERWM-PASSKPDAGAA-------PFTDPF 256          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A6I3FC23_9ACTN (Fe-S cluster assembly ATPase SufC n=2 Tax=root TaxID=1 RepID=A0A6I3FC23_9ACTN)

HSP 1 Score: 164 bits (416), Expect = 2.180e-48
Identity = 90/131 (68.70%), Postives = 99/131 (75.57%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWV---EPASPSANAKASAATLPDDPFADPLA 384
            DLSGGEKKRNET+QL VLRPRFAILDELDSGLDVDALR  S RVE+AT E  LGVLAITHY+RL E+L+PDVVH+ A GRI  +GG ELA ELE TGY +WV   E A+PS  A         DPFADP A
Sbjct:  140 DLSGGEKKRNETMQLAVLRPRFAILDELDSGLDVDALRACSRRVEEATTEFNLGVLAITHYTRLLEELKPDVVHILANGRIVTSGGPELADELEETGYAQWVTDDEIAAPSGEA---------DPFADPFA 261          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A538JD45_9ACTN (Fe-S cluster assembly ATPase SufC n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538JD45_9ACTN)

HSP 1 Score: 164 bits (416), Expect = 2.570e-48
Identity = 85/128 (66.41%), Postives = 98/128 (76.56%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPLA 384
            DLSGGE+KRNETLQLGVLRP+ AILDE+DSGLD+DALR V+ RVE AT+E  LGVLAITHY R+  +L+PDVVHV   GRI  TGG ELA ELE TGYE + +      +  ASA T  +DPFADPLA
Sbjct:  140 DLSGGERKRNETLQLGVLRPKIAILDEIDSGLDIDALRAVARRVEAATKEIDLGVLAITHYRRILGELKPDVVHVLRGGRILATGGPELADELEHTGYEGYEDDTDAETDRAASAGTTAEDPFADPLA 267          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: UPI001AA052C6 (Fe-S cluster assembly ATPase SufC n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA052C6)

HSP 1 Score: 162 bits (410), Expect = 2.010e-47
Identity = 90/128 (70.31%), Postives = 96/128 (75.00%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPLA 384
            DLSGGEKKR+ETLQLGVLRPRFAILDELDSGLDVDALR  + RVE AT E  LGVLAITHYSRL  +LRPDVVHV A GRIQ TGG ELA ELE TGY  + E      + +   A    DPFADPLA
Sbjct:  140 DLSGGEKKRSETLQLGVLRPRFAILDELDSGLDVDALRACARRVESATTEFDLGVLAITHYSRLLNELRPDVVHVLARGRIQATGGPELAAELERTGYAAYGETDQEDPSGRRGPAGN-GDPFADPLA 266          
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Match: A0A6J6XNL1_9ZZZZ (Unannotated protein n=1 Tax=freshwater metagenome TaxID=449393 RepID=A0A6J6XNL1_9ZZZZ)

HSP 1 Score: 160 bits (405), Expect = 2.250e-47
Identity = 87/128 (67.97%), Postives = 93/128 (72.66%), Query Frame = 1
Query:    1 DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEEDGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYERWVEPASPSANAKASAATLPDDPFADPLA 384
            DLSGGEKKRNET+QL VLRP+FAILDELDSGLDVDALR  S RVE AT E  LGVLAITHYSRL E+L+PDVVHV A GRI   GG ELA ELE TGY  W +  +P A A         DPFA P A
Sbjct:   91 DLSGGEKKRNETMQLAVLRPKFAILDELDSGLDVDALRACSRRVEAATTEFNLGVLAITHYSRLLEELKPDVVHVLAQGRIVAAGGPELADELERTGYAEWADDEAPPAAA---------DPFAAPFA 209          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112634.2637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D8LV15_9ACTN7.270e-6282.81Fe-S cluster assembly ATPase SufC n=6 Tax=Acidimic... [more]
A0A6B1AXW1_9ACTN6.090e-5778.23Fe-S cluster assembly ATPase SufC n=1 Tax=Acidimic... [more]
A0A6B0WJL6_9ACTN2.460e-5170.63Fe-S cluster assembly ATPase SufC n=3 Tax=Acidimic... [more]
A0A7V9SPE2_9ACTN1.180e-5071.88Fe-S cluster assembly ATPase SufC n=1 Tax=Actinomy... [more]
A0A6I3BZ12_9ACTN3.760e-5069.53Fe-S cluster assembly ATPase SufC n=2 Tax=root Tax... [more]
A0A6B1EET4_9ACTN1.510e-4968.50Fe-S cluster assembly ATPase SufC n=2 Tax=Acidimic... [more]
A0A6I3FC23_9ACTN2.180e-4868.70Fe-S cluster assembly ATPase SufC n=2 Tax=root Tax... [more]
A0A538JD45_9ACTN2.570e-4866.41Fe-S cluster assembly ATPase SufC n=1 Tax=Actinomy... [more]
UPI001AA052C62.010e-4770.31Fe-S cluster assembly ATPase SufC n=1 Tax=Rhabdoth... [more]
A0A6J6XNL1_9ZZZZ2.250e-4767.97Unannotated protein n=1 Tax=freshwater metagenome ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112634contigM-pyrifera_M_contig112634:1..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score137.1
Seed ortholog evalue5.7e-30
Seed eggNOG ortholog1150399.AQYK01000002_gene2158
Preferred namesufC
KEGG koko:K09013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs2GKB7@201174,4FMJI@85023,COG0396@1,COG0396@2
COG Functional cat.O
Best tax levelMicrobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.4811227-CDS-M-pyrifera_M_contig112634:0..3871622815640.4811227-CDS-M-pyrifera_M_contig112634:0..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112634 1..387 +
1692277500.6075394-CDS-M-pyrifera_M_contig112634:0..3871692277500.6075394-CDS-M-pyrifera_M_contig112634:0..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112634 1..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112634.2637.1prot_M-pyrifera_M_contig112634.2637.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112634 1..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112634.2637.1

>prot_M-pyrifera_M_contig112634.2637.1 ID=prot_M-pyrifera_M_contig112634.2637.1|Name=mRNA_M-pyrifera_M_contig112634.2637.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
DLSGGEKKRNETLQLGVLRPRFAILDELDSGLDVDALRLVSGRVEQATEE
DGLGVLAITHYSRLFEQLRPDVVHVFAAGRIQETGGAELATELESTGYER
WVEPASPSANAKASAATLPDDPFADPLA*
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mRNA from alignment at M-pyrifera_M_contig112634:1..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112634.2637.1 ID=mRNA_M-pyrifera_M_contig112634.2637.1|Name=mRNA_M-pyrifera_M_contig112634.2637.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig112634:1..387+ (Macrocystis pyrifera P11B4 male)
GACCTGTCGGGTGGCGAGAAGAAGCGCAACGAGACGCTCCAGCTCGGGGT GCTCCGACCGAGGTTCGCCATTCTCGACGAGCTCGACTCCGGCCTCGACG TCGATGCGCTACGGCTGGTTAGTGGTCGAGTCGAACAGGCCACCGAGGAA GACGGCCTCGGCGTGCTCGCCATCACCCACTACAGCCGCCTGTTCGAACA GCTGCGGCCCGATGTCGTCCACGTGTTCGCGGCGGGACGCATCCAGGAAA CCGGCGGTGCCGAGCTCGCCACCGAGCTCGAGTCGACCGGCTACGAACGC TGGGTCGAACCGGCATCGCCCAGTGCCAATGCCAAGGCCAGTGCGGCCAC GCTTCCCGACGACCCCTTCGCCGATCCGCTGGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112634:1..387+

>mRNA_M-pyrifera_M_contig112634.2637.1 ID=mRNA_M-pyrifera_M_contig112634.2637.1|Name=mRNA_M-pyrifera_M_contig112634.2637.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig112634:1..387+ (Macrocystis pyrifera P11B4 male)
GACCTGTCGGGTGGCGAGAAGAAGCGCAACGAGACGCTCCAGCTCGGGGT
GCTCCGACCGAGGTTCGCCATTCTCGACGAGCTCGACTCCGGCCTCGACG
TCGATGCGCTACGGCTGGTTAGTGGTCGAGTCGAACAGGCCACCGAGGAA
GACGGCCTCGGCGTGCTCGCCATCACCCACTACAGCCGCCTGTTCGAACA
GCTGCGGCCCGATGTCGTCCACGTGTTCGCGGCGGGACGCATCCAGGAAA
CCGGCGGTGCCGAGCTCGCCACCGAGCTCGAGTCGACCGGCTACGAACGC
TGGGTCGAACCGGCATCGCCCAGTGCCAATGCCAAGGCCAGTGCGGCCAC
GCTTCCCGACGACCCCTTCGCCGATCCGCTGGCCTGAGACCTGTCGGGTG
GCGAGAAGAAGCGCAACGAGACGCTCCAGCTCGGGGTGCTCCGACCGAGG
TTCGCCATTCTCGACGAGCTCGACTCCGGCCTCGACGTCGATGCGCTACG
GCTGGTTAGTGGTCGAGTCGAACAGGCCACCGAGGAAGACGGCCTCGGCG
TGCTCGCCATCACCCACTACAGCCGCCTGTTCGAACAGCTGCGGCCCGAT
GTCGTCCACGTGTTCGCGGCGGGACGCATCCAGGAAACCGGCGGTGCCGA
GCTCGCCACCGAGCTCGAGTCGACCGGCTACGAACGCTGGGTCGAACCGG
CATCGCCCAGTGCCAATGCCAAGGCCAGTGCGGCCACGCTTCCCGACGAC
CCCTTCGCCGATCCGCTGGCCTGA
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