mRNA_M-pyrifera_M_contig112615.2631.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112615.2631.1
Unique NamemRNA_M-pyrifera_M_contig112615.2631.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: A0A5J4Y8B4_9CHLO (EGF-domain O-c isoform A n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y8B4_9CHLO)

HSP 1 Score: 74.7 bits (182), Expect = 5.330e-14
Identity = 44/126 (34.92%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   10 VVVRREVEGKLDGLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQAR-VASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCYGK--IKERKPTDIAPPP 378
            V++ R+  GK   + RQ+ N  EL A + +  G  V+ +++D A++ L EQ + V+S+T+++VG HGA + WSL+MPPG+AL+E +P        + YE+ A  +G  Y +   +++ P  ++ PP
Sbjct:   61 VLISRKPYGKKKRVARQIRNELELFAMVEQMQG--VQARLIDLARISLAEQIQLVSSDTNILVGMHGAALAWSLMMPPGTALLELWPQPNMW---RLYEHTAQWAGLHYRRWVSQDKMPHSVSEPP 181          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: A0A7S2F8D2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F8D2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.250e-12
Identity = 38/115 (33.04%), Postives = 65/115 (56.52%), Query Frame = 1
Query:   37 KLDGLKRQMGN---VEELIAAIRERV---GGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCYGKIKERKPTD 363
            K  GL RQ+ N   VE+ + ++       G  V+ + VDF+ ++ + Q  + + TD+M+GPHGAG++ ++ MP  +AL+E   ++ G    + + NLA  SGH Y  ++   P D
Sbjct:   89 KSRGLGRQVRNDNAVEQALKSLEGMTFSNGAKVKTRAVDFSTLDFKGQIEIDATTDLMIGPHGAGLMHNVFMPDRAALIEL--WIDGSSANRHFHNLAFWSGHAYQGVQMGNPVD 201          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: UPI001EE52C7E (EGF domain-specific O-linked N-acetylglucosamine transferase-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE52C7E)

HSP 1 Score: 71.2 bits (173), Expect = 5.420e-12
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   22 REVEGKLDGLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCYGK--IKERKPTDIAPPP 378
            R V+G +   KRQ  N ++LI A++    G   VQ +    + +REQ ++ +ETD+++G HGAG+  SL   PG+ L+E FPY       K  E LA+  G  Y       R  T +  PP
Sbjct:  233 RNVKGTI---KRQFNNSDDLIQALKNTFPG-TPVQAIALETLTIREQIQLMTETDILIGVHGAGLALSLFQVPGTGLIELFPYEYKSHRNKHMEQLAVWGGKLYSSWYSNNRFATTVHVPP 349          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: UPI001EE5EC5A (uncharacterized protein LOC124291307 n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5EC5A)

HSP 1 Score: 70.1 bits (170), Expect = 1.520e-11
Identity = 45/135 (33.33%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 RVSVVVRRE-------VEGKLDGLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCYGK--IKERKPTDIAPPP 378
            +++VV+RR        V+G +   KRQ  N ++LI A++  V G   VQ +    + +REQ ++ +ETD+++G HGAG+  SL   PG+ L+E FP+          E+LA+  G  Y       R  T +  PP
Sbjct:  219 KITVVLRRNYIAHPRNVKGTI---KRQFNNSDDLIQALKNAVPG-TPVQAIALETLTIREQIQLMTETDILIGVHGAGLALSLFQVPGTGLIELFPFEYKRHRNNHMEHLAVWGGKLYSSWYSDNRLATTVHVPP 349          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: A1CX23_NEOFI (Uncharacterized protein n=4 Tax=Aspergillus TaxID=5052 RepID=A1CX23_NEOFI)

HSP 1 Score: 69.7 bits (169), Expect = 2.270e-11
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1
Query:   55 RQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCYGKIKERKP 357
            R++ N E+    ++++    + VQ++DFA +  REQ R+A E+D++VG HGAG+   + +P GS +VE  P     +  K + NLA   GH Y      KP
Sbjct:  349 RKLINQEDYFKTVKKQFPH-ITVQMIDFASIPFREQLRIAQESDILVGVHGAGLTHGIFLPSGSVMVEILP---PGLNHKGFRNLASLLGHLYFSAHATKP 445          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: A0A7S1WAF1_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1WAF1_NEODS)

HSP 1 Score: 68.6 bits (166), Expect = 3.570e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:   55 RQMGNVEELIAAIRERV-----GGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVE 258
            R++ N + L A    R+     GG + V+VVDFA + + EQARVA+E+ V+VG HG  + WSLL PPGS LVE
Sbjct:  228 RRLINADALAADFVRRMPNRTSGGALRVRVVDFADLTIDEQARVAAESVVLVGVHGTALQWSLLQPPGSVLVE 300          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: UPI00201E80DF (uncharacterized protein LOC124139781 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201E80DF)

HSP 1 Score: 68.2 bits (165), Expect = 6.600e-11
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = 1
Query:    1 RVSVVVR-------REVEGKLDGLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCY 333
            R++VV+R       R V G ++   RQ  N +ELI A++    G   VQ V    + +REQ ++ +ETD+++G HGAG+  +L   PG+ L+E FP+   +      E LA+  G  Y
Sbjct:  206 RITVVLRKNYIAYPRNVRGLIE---RQFNNSDELIQALKNTFPG-TPVQAVALETLTIREQIQLITETDILIGVHGAGLALTLFQVPGTGLIELFPHKYKQHRNSHMEQLAVLGGKLY 319          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: UPI00201F15D2 (uncharacterized protein LOC124115398 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F15D2)

HSP 1 Score: 64.3 bits (155), Expect = 1.700e-9
Identity = 40/118 (33.90%), Postives = 63/118 (53.39%), Query Frame = 1
Query:    1 RVSVVVR-------REVEGKLDGLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCY 333
            R++VV+R       R V G ++   RQ  N +ELI A++        VQ V    + +REQ ++ +ETD+++G HGAG+  +L   PG+ L+E FP+   +      E LA+  G  Y
Sbjct:  280 RITVVLRNNYIAHPRNVRGIIE---RQFNNSDELIQALKNTFPE-TPVQAVALETLTIREQIQLITETDILIGVHGAGLALTLFQVPGTGLIELFPHKYKQHRNNHMEQLAVWGGKLY 393          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: A0A1L9S6I4_9EURO (Uncharacterized protein n=1 Tax=Penicilliopsis zonata CBS 506.65 TaxID=1073090 RepID=A0A1L9S6I4_9EURO)

HSP 1 Score: 64.3 bits (155), Expect = 1.740e-9
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1
Query:  121 VQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCYGKI 342
            VQ VDFA +  REQ R+AS TD+++G HGAG+   L M  GS +VE  P    +   K + N A   GH Y  +
Sbjct:  355 VQAVDFAAIPFREQVRIASTTDILLGVHGAGLTHGLFMDAGSVMVEILP---PDFNHKGFRNFAGLLGHAYYSV 425          
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Match: A0A3R7NRJ0_9TRYP (Glycosyltransferase n=1 Tax=Trypanosoma conorhini TaxID=83891 RepID=A0A3R7NRJ0_9TRYP)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-9
Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1
Query:   46 GLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQMELREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCYENLALRSGHCY 333
            G  R++ N+ +++  ++   G G E +VV F  + +REQ R+ + TD+++G HG G++W   +PPGSA++E        VG   Y   AL  GH Y
Sbjct:  371 GRTRRLSNIPDIVQLVQ---GMGFEPRVVAFETLPIREQLRIVTMTDLLIGVHGNGLMWLQFLPPGSAVIEL-------VGV-WYTPYALLWGHSY 455          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112615.2631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4Y8B4_9CHLO5.330e-1434.92EGF-domain O-c isoform A n=1 Tax=Trebouxia sp. A1-... [more]
A0A7S2F8D2_9STRA2.250e-1233.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001EE52C7E5.420e-1235.54EGF domain-specific O-linked N-acetylglucosamine t... [more]
UPI001EE5EC5A1.520e-1133.33uncharacterized protein LOC124291307 n=2 Tax=Halio... [more]
A1CX23_NEOFI2.270e-1135.64Uncharacterized protein n=4 Tax=Aspergillus TaxID=... [more]
A0A7S1WAF1_NEODS3.570e-1149.32Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
UPI00201E80DF6.600e-1134.75uncharacterized protein LOC124139781 n=1 Tax=Halio... [more]
UPI00201F15D21.700e-933.90uncharacterized protein LOC124115398 n=2 Tax=Halio... [more]
A0A1L9S6I4_9EURO1.740e-943.24Uncharacterized protein n=1 Tax=Penicilliopsis zon... [more]
A0A3R7NRJ0_9TRYP1.770e-935.42Glycosyltransferase n=1 Tax=Trypanosoma conorhini ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112615contigM-pyrifera_M_contig112615:124..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.4
Seed ortholog evalue5.1e-15
Seed eggNOG ortholog554065.XP_005848377.1
KEGG koko:K03714
KEGG ReactionR06016
KEGG Pathwayko00513,ko01100,map00513,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0006464,GO:0006486,GO:0006487,GO:0006605,GO:0006612,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016740,GO:0016757,GO:0016763,GO:0019538,GO:0031090,GO:0031204,GO:0031984,GO:0031985,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0035252,GO:0036211,GO:0042285,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050513,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070085,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Beta-1,2-xylosyltransferase
EggNOG OGs37P3Y@33090,KOG4698@1,KOG4698@2759
EC2.4.2.38
COG Functional cat.S
CAZyGT61
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.2093558-CDS-M-pyrifera_M_contig112615:123..5041622815640.2093558-CDS-M-pyrifera_M_contig112615:123..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112615 124..504 -
1692277500.5193422-CDS-M-pyrifera_M_contig112615:123..5041692277500.5193422-CDS-M-pyrifera_M_contig112615:123..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112615 124..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112615.2631.1prot_M-pyrifera_M_contig112615.2631.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112615 124..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112615.2631.1

>prot_M-pyrifera_M_contig112615.2631.1 ID=prot_M-pyrifera_M_contig112615.2631.1|Name=mRNA_M-pyrifera_M_contig112615.2631.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=127bp
RVSVVVRREVEGKLDGLKRQMGNVEELIAAIRERVGGGVEVQVVDFAQME
LREQARVASETDVMVGPHGAGMLWSLLMPPGSALVEFFPYLGGEVGPKCY
ENLALRSGHCYGKIKERKPTDIAPPPD
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mRNA from alignment at M-pyrifera_M_contig112615:124..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112615.2631.1 ID=mRNA_M-pyrifera_M_contig112615.2631.1|Name=mRNA_M-pyrifera_M_contig112615.2631.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=381bp|location=Sequence derived from alignment at M-pyrifera_M_contig112615:124..504- (Macrocystis pyrifera P11B4 male)
CGTGTGAGTGTTGTAGTGCGAAGGGAGGTGGAGGGAAAGCTGGATGGGTT GAAGCGACAGATGGGGAATGTGGAAGAGTTGATCGCTGCCATTCGAGAGA GGGTTGGAGGTGGTGTGGAGGTGCAAGTGGTGGACTTTGCACAAATGGAG CTTCGAGAACAAGCGAGGGTTGCTAGCGAAACTGATGTGATGGTGGGGCC ACATGGAGCTGGGATGCTATGGAGTTTACTCATGCCACCAGGCAGTGCCT TGGTGGAATTCTTTCCTTACCTCGGAGGAGAAGTTGGTCCAAAGTGTTAT GAAAACTTGGCACTTCGGTCTGGACATTGCTATGGGAAGATCAAGGAACG CAAACCCACCGACATTGCTCCACCGCCGGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112615:124..504-

>mRNA_M-pyrifera_M_contig112615.2631.1 ID=mRNA_M-pyrifera_M_contig112615.2631.1|Name=mRNA_M-pyrifera_M_contig112615.2631.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=762bp|location=Sequence derived from alignment at M-pyrifera_M_contig112615:124..504- (Macrocystis pyrifera P11B4 male)
CGTGTGAGTGTTGTAGTGCGAAGGGAGGTGGAGGGAAAGCTGGATGGGTT
GAAGCGACAGATGGGGAATGTGGAAGAGTTGATCGCTGCCATTCGAGAGA
GGGTTGGAGGTGGTGTGGAGGTGCAAGTGGTGGACTTTGCACAAATGGAG
CTTCGAGAACAAGCGAGGGTTGCTAGCGAAACTGATGTGATGGTGGGGCC
ACATGGAGCTGGGATGCTATGGAGTTTACTCATGCCACCAGGCAGTGCCT
TGGTGGAATTCTTTCCTTACCTCGGAGGAGAAGTTGGTCCAAAGTGTTAT
GAAAACTTGGCACTTCGGTCTGGACATTGCTATGGGAAGATCAAGGAACG
CAAACCCACCGACATTGCTCCACCGCCGGATCGTGTGAGTGTTGTAGTGC
GAAGGGAGGTGGAGGGAAAGCTGGATGGGTTGAAGCGACAGATGGGGAAT
GTGGAAGAGTTGATCGCTGCCATTCGAGAGAGGGTTGGAGGTGGTGTGGA
GGTGCAAGTGGTGGACTTTGCACAAATGGAGCTTCGAGAACAAGCGAGGG
TTGCTAGCGAAACTGATGTGATGGTGGGGCCACATGGAGCTGGGATGCTA
TGGAGTTTACTCATGCCACCAGGCAGTGCCTTGGTGGAATTCTTTCCTTA
CCTCGGAGGAGAAGTTGGTCCAAAGTGTTATGAAAACTTGGCACTTCGGT
CTGGACATTGCTATGGGAAGATCAAGGAACGCAAACCCACCGACATTGCT
CCACCGCCGGAT
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