prot_M-pyrifera_M_contig112448.2606.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig112448.2606.1
Unique Nameprot_M-pyrifera_M_contig112448.2606.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length193
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112448.2606.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007016O-antigen ligase-relatedPFAMPF04932Wzy_Ccoord: 12..152
e-value: 8.9E-10
score: 38.4
NoneNo IPR availablePANTHERPTHR37422FAMILY NOT NAMEDcoord: 4..171
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 42..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 159..193
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 76..137
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..158
NoneNo IPR availableTMHMMTMhelixcoord: 26..43
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 2..21
NoneNo IPR availableTMHMMTMhelixcoord: 56..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112448contigM-pyrifera_M_contig112448:7..585 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112448.2606.1mRNA_M-pyrifera_M_contig112448.2606.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig112448 7..585 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig112448.2606.1 ID=prot_M-pyrifera_M_contig112448.2606.1|Name=mRNA_M-pyrifera_M_contig112448.2606.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
RGVWRSAPVVLAVAFGLAVLWTGSRGSLISCVVGLATIAWVVSPGRAKSA
GKLAALAGSALLLFALFSGQVSAAWQSFLANDASSNLYRYQIAVLATRLF
LENPLVGVGLGGMEQAGLFMASDLRSLAATIIVSDNDYARVLAELGLLGA
GLIAWFAWRLRGALAARIRATRALGERQGLAVALGAGIGVNLM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007016O-antigen_ligase-related