mRNA_M-pyrifera_M_contig10011.26.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10011.26.1
Unique NamemRNA_M-pyrifera_M_contig10011.26.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig10011.26.1 vs. uniprot
Match: D7FVJ8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ8_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 1.120e-22
Identity = 59/121 (48.76%), Postives = 76/121 (62.81%), Query Frame = 1 
Query:    7 LLKAGADPTVRTPEDRPPLSV-IAATASNSDSAEIVRSLLRGGAPPDAFCMDGLFPLHIACEAGGDAGVVQALLAGGAEINSLCPGEDFLLPIHLAARSGHTKAVRALATTAG--CRLDEK 360
            LL+AG D T R   DR  L+V +A       SA +V++LL+ GA P +FC  G  PLH AC +G D  VVQALL GGA +++ CPG  FLLPIH+A  + HT  VR L  T+G  C L++K
Sbjct: 1359 LLEAGGDHTERDILDRSCLTVAVAGVKPTRRSASVVQALLKWGADPTSFCAKGFNPLHHACASGVDPAVVQALLDGGAAVDTPCPGYRFLLPIHMAVHNEHTDVVRVLTETSGVACGLNQK 1479
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10011.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVJ8_ECTSI1.120e-2248.76Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10011contigM-pyrifera_M_contig10011:3480..3854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.4e-20
Seed eggNOG ortholog2880.D7FVJ8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815495.787699-CDS-M-pyrifera_M_contig10011:3479..38541622815495.787699-CDS-M-pyrifera_M_contig10011:3479..3854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10011 3480..3854 +
1692277437.9660547-CDS-M-pyrifera_M_contig10011:3479..38541692277437.9660547-CDS-M-pyrifera_M_contig10011:3479..3854Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10011 3480..3854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10011.26.1prot_M-pyrifera_M_contig10011.26.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10011 3480..3854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10011.26.1

>prot_M-pyrifera_M_contig10011.26.1 ID=prot_M-pyrifera_M_contig10011.26.1|Name=mRNA_M-pyrifera_M_contig10011.26.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MQLLKAGADPTVRTPEDRPPLSVIAATASNSDSAEIVRSLLRGGAPPDAF
CMDGLFPLHIACEAGGDAGVVQALLAGGAEINSLCPGEDFLLPIHLAARS
GHTKAVRALATTAGCRLDEKANNG*
back to top

mRNA from alignment at M-pyrifera_M_contig10011:3480..3854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10011.26.1 ID=mRNA_M-pyrifera_M_contig10011.26.1|Name=mRNA_M-pyrifera_M_contig10011.26.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=375bp|location=Sequence derived from alignment at M-pyrifera_M_contig10011:3480..3854+ (Macrocystis pyrifera P11B4 male)
ATGCAGTTGCTGAAGGCGGGAGCGGACCCAACTGTGCGGACACCTGAGGA
CCGCCCACCGTTGTCGGTGATAGCCGCCACAGCCTCCAACTCTGACTCGG
CGGAAATCGTCCGCTCTCTGCTAAGGGGGGGGGCTCCGCCAGACGCGTTC
TGCATGGACGGTTTATTTCCTCTTCATATCGCGTGTGAGGCCGGTGGCGA
TGCTGGCGTCGTCCAGGCGTTGCTTGCAGGAGGGGCGGAGATCAACTCTC
TGTGTCCGGGAGAGGATTTCCTCCTTCCGATTCATTTGGCGGCGAGAAGC
GGGCACACCAAGGCTGTGCGAGCGCTTGCTACCACTGCTGGTTGCAGACT
CGATGAAAAGGCTAACAATGGGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10011:3480..3854+

>mRNA_M-pyrifera_M_contig10011.26.1 ID=mRNA_M-pyrifera_M_contig10011.26.1|Name=mRNA_M-pyrifera_M_contig10011.26.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig10011:3480..3854+ (Macrocystis pyrifera P11B4 male)
ATGCAGTTGCTGAAGGCGGGAGCGGACCCAACTGTGCGGACACCTGAGGA
CCGCCCACCGTTGTCGGTGATAGCCGCCACAGCCTCCAACTCTGACTCGG
CGGAAATCGTCCGCTCTCTGCTAAGGGGGGGGGCTCCGCCAGACGCGTTC
TGCATGGACGGTTTATTTCCTCTTCATATCGCGTGTGAGGCCGGTGGCGA
TGCTGGCGTCGTCCAGGCGTTGCTTGCAGGAGGGGCGGAGATCAACTCTC
TGTGTCCGGGAGAGGATTTCCTCCTTCCGATTCATTTGGCGGCGAGAAGC
GGGCACACCAAGGCTGTGCGAGCGCTTGCTACCACTGCTGGTTGCAGACT
CGATGAAAAGGCTAACAATGGGTAAATGCAGTTGCTGAAGGCGGGAGCGG
ACCCAACTGTGCGGACACCTGAGGACCGCCCACCGTTGTCGGTGATAGCC
GCCACAGCCTCCAACTCTGACTCGGCGGAAATCGTCCGCTCTCTGCTAAG
GGGGGGGGCTCCGCCAGACGCGTTCTGCATGGACGGTTTATTTCCTCTTC
ATATCGCGTGTGAGGCCGGTGGCGATGCTGGCGTCGTCCAGGCGTTGCTT
GCAGGAGGGGCGGAGATCAACTCTCTGTGTCCGGGAGAGGATTTCCTCCT
TCCGATTCATTTGGCGGCGAGAAGCGGGCACACCAAGGCTGTGCGAGCGC
TTGCTACCACTGCTGGTTGCAGACTCGATGAAAAGGCTAACAATGGGTAA
back to top