mRNA_M-pyrifera_M_contig101239.260.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101239.260.1
Unique NamemRNA_M-pyrifera_M_contig101239.260.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101239.260.1 vs. uniprot
Match: A0A5F9DDW4_RABIT (PKHD1 like 1 n=1 Tax=Oryctolagus cuniculus TaxID=9986 RepID=A0A5F9DDW4_RABIT)

HSP 1 Score: 53.1 bits (126), Expect = 2.000e-6
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:    1 IVFAYQVVIDSVYPQYWSAGGGDRVMIVGSGFLDDASREEVLVDGKECRIDSVHSNHTHLFCTSP 195
            +VF Y + I  ++P   S GGG  +M+ G+GF  +     VLV G EC +D + SN+T L C  P
Sbjct: 1957 VVFEYPLDIQDIHPHQGSFGGGQTLMMTGTGF--NPQNSIVLVCGSECAVDRLSSNYTTLLCKIP 2019
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BLAST of mRNA_M-pyrifera_M_contig101239.260.1 vs. uniprot
Match: G1TUG6_RABIT (PKHD1 like 1 n=2 Tax=Oryctolagus cuniculus TaxID=9986 RepID=G1TUG6_RABIT)

HSP 1 Score: 53.1 bits (126), Expect = 2.000e-6
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 1 
Query:    1 IVFAYQVVIDSVYPQYWSAGGGDRVMIVGSGFLDDASREEVLVDGKECRIDSVHSNHTHLFCTSP 195
            +VF Y + I  ++P   S GGG  +M+ G+GF  +     VLV G EC +D + SN+T L C  P
Sbjct: 1968 VVFEYPLDIQDIHPHQGSFGGGQTLMMTGTGF--NPQNSIVLVCGSECAVDRLSSNYTTLLCKIP 2030
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101239.260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5F9DDW4_RABIT2.000e-640.00PKHD1 like 1 n=1 Tax=Oryctolagus cuniculus TaxID=9... [more]
G1TUG6_RABIT2.000e-640.00PKHD1 like 1 n=2 Tax=Oryctolagus cuniculus TaxID=9... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101239contigM-pyrifera_M_contig101239:339..548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.850751-CDS-M-pyrifera_M_contig101239:338..5481622815509.850751-CDS-M-pyrifera_M_contig101239:338..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101239 339..548 -
1692277443.8430665-CDS-M-pyrifera_M_contig101239:338..5481692277443.8430665-CDS-M-pyrifera_M_contig101239:338..548Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101239 339..548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101239.260.1prot_M-pyrifera_M_contig101239.260.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101239 339..548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101239.260.1

>prot_M-pyrifera_M_contig101239.260.1 ID=prot_M-pyrifera_M_contig101239.260.1|Name=mRNA_M-pyrifera_M_contig101239.260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
IVFAYQVVIDSVYPQYWSAGGGDRVMIVGSGFLDDASREEVLVDGKECRI
DSVHSNHTHLFCTSPSIPPS
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mRNA from alignment at M-pyrifera_M_contig101239:339..548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101239.260.1 ID=mRNA_M-pyrifera_M_contig101239.260.1|Name=mRNA_M-pyrifera_M_contig101239.260.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig101239:339..548- (Macrocystis pyrifera P11B4 male)
ATCGTCTTTGCCTATCAGGTCGTCATTGATTCCGTGTACCCACAATATTG
GAGTGCTGGGGGTGGTGATAGAGTCATGATTGTTGGAAGTGGGTTCTTGG
ATGATGCTTCTCGCGAAGAAGTATTGGTTGATGGAAAAGAGTGTCGCATA
GATTCTGTACACTCGAACCACACTCATCTGTTTTGCACATCACCATCAAT
TCCACCATCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101239:339..548-

>mRNA_M-pyrifera_M_contig101239.260.1 ID=mRNA_M-pyrifera_M_contig101239.260.1|Name=mRNA_M-pyrifera_M_contig101239.260.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig101239:339..548- (Macrocystis pyrifera P11B4 male)
ATCGTCTTTGCCTATCAGGTCGTCATTGATTCCGTGTACCCACAATATTG
GAGTGCTGGGGGTGGTGATAGAGTCATGATTGTTGGAAGTGGGTTCTTGG
ATGATGCTTCTCGCGAAGAAGTATTGGTTGATGGAAAAGAGTGTCGCATA
GATTCTGTACACTCGAACCACACTCATCTGTTTTGCACATCACCATCAAT
TCCACCATCAATCGTCTTTGCCTATCAGGTCGTCATTGATTCCGTGTACC
CACAATATTGGAGTGCTGGGGGTGGTGATAGAGTCATGATTGTTGGAAGT
GGGTTCTTGGATGATGCTTCTCGCGAAGAAGTATTGGTTGATGGAAAAGA
GTGTCGCATAGATTCTGTACACTCGAACCACACTCATCTGTTTTGCACAT
CACCATCAATTCCACCATCA
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