mRNA_M-pyrifera_M_contig101233.258.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101233.258.1
Unique NamemRNA_M-pyrifera_M_contig101233.258.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: A0A813M469_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813M469_9BILA)

HSP 1 Score: 117 bits (294), Expect = 2.410e-29
Identity = 52/95 (54.74%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTR 294
            D+HRTGAK VP+S +QDPK +G+ YH+TGV+R KPG+ + T+ +SCSDKIA W V+G QGALLS L+ +P+Y  ++++G   YSE+S++R L+ R
Sbjct:  133 DIHRTGAKCVPNSLIQDPKEQGVLYHITGVVRIKPGRGDPTISMSCSDKIAKWLVLGIQGALLSNLIKEPIYLDTIVIGKCPYSEESIQRGLIDR 227
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: A0A6G1PGH6_9TELE (tRNA-specific adenosine deaminase 1 n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1PGH6_9TELE)

HSP 1 Score: 117 bits (294), Expect = 9.080e-29
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTR---IAGIQVGETFCP 330
            D+HRTGAK VPS P  DP   G+ YH TGVLR KPG+ E TL LSCSDK+A W V+G QGALLS  L + LYF++V+VG   YSE+ ++RA+VTR   ++ +  G + CP
Sbjct:  252 DIHRTGAKCVPSGPA-DPLQAGVGYHSTGVLRVKPGRGEPTLSLSCSDKLARWAVLGFQGALLSHYLQEALYFTTVVVGKCPYSEEVMQRAMVTRCSHVSHLPAGFSLCP 360
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: UPI001D0851ED (tRNA-specific adenosine deaminase 1 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0851ED)

HSP 1 Score: 116 bits (290), Expect = 1.300e-28
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSS-VIVGSL-YSEDSLRRALVTRIAGIQVGETF 324
            D+HRTGAK + +   QDPKGEG +YH+TGV+RTKPG+ + TL +SCSDKI  W  +G QG LLS  L KP+Y S+ V+VG   +S++SL+RAL  RI  I++   F
Sbjct:  175 DIHRTGAKCLKNDERQDPKGEGADYHITGVVRTKPGRGDPTLSISCSDKITKWCYLGLQGGLLSKFLEKPIYLSAFVVVGDTPFSKESLQRALFDRIGNIELAPPF 280
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: A0A6P7MQS0_BETSP (tRNA-specific adenosine deaminase 1 isoform X1 n=4 Tax=Betta splendens TaxID=158456 RepID=A0A6P7MQS0_BETSP)

HSP 1 Score: 117 bits (293), Expect = 1.320e-28
Identity = 63/113 (55.75%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTR---IAGIQVGETFCPLLL 339
            D+HRTGAK VP  P  DP   GI YH TGVLR KPG+ E TL +SCSDK+A WTV+G QGALLS  L + LYFS+V+VG   YS++ ++RAL+TR   ++ +  G + CP LL
Sbjct:  258 DIHRTGAKCVPGVPA-DPLHAGIRYHSTGVLRVKPGRGEPTLSMSCSDKLARWTVLGFQGALLSHYLQEALYFSTVVVGKCPYSQEVVQRALITRCSHVSHLPAGFSVCPPLL 369
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: A0A3Q1HM40_ANATE (Adenosine deaminase tRNA specific 1 n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A3Q1HM40_ANATE)

HSP 1 Score: 116 bits (290), Expect = 3.080e-28
Identity = 61/110 (55.45%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTR---IAGIQVGETFCP 330
            D+HRTGAK VP  P  DP   G+ YH TGVLR KPG+ E TL LSCSDK+A W+V+G QGALLS  L + LYFS+V+VG   YS + ++RALVTR   ++ +  G + CP
Sbjct:  242 DIHRTGAKCVPGGPT-DPLHAGVGYHSTGVLRVKPGRGEPTLSLSCSDKLARWSVLGFQGALLSHYLQEALYFSTVVVGKCPYSREVMQRALVTRCSHVSHLPAGFSVCP 350
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: UPI000BA7F764 (tRNA-specific adenosine deaminase 1-like isoform X1 n=3 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F764)

HSP 1 Score: 115 bits (289), Expect = 4.770e-28
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTRIAGIQ 309
            D+HRTGAK VP    QDP+GEG +YHVTGVLRTKPG+ E TL LSCSDK+A W V G QGALLS  L+ P+Y SS+I+G   ++E+++ RA+  R+  +Q
Sbjct:  257 DIHRTGAKCVPGD-YQDPQGEGADYHVTGVLRTKPGRGERTLSLSCSDKMARWNVCGLQGALLSHFLALPVYLSSIIIGRCPFNEEAIVRAVFDRLRLVQ 355
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: UPI001F5EB4F2 (tRNA-specific adenosine deaminase 1 n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5EB4F2)

HSP 1 Score: 115 bits (288), Expect = 8.330e-28
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVG--SLYSEDSLRRALVTRIAGI 306
            D++RTG+K +P   LQDPK  G NYHVTGVLR KPG+ E +L LSCSDK+A W  VG QGALLS+LL  P+Y+ ++ +G  S YS D+L RA+V R  G+
Sbjct:  306 DVYRTGSKCLPGEKLQDPKLPGANYHVTGVLRGKPGRGERSLSLSCSDKLARWAAVGLQGALLSLLLHAPVYYKTLNIGGSSPYSYDALHRAVVGRTTGV 405
[Close]
BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: A0A6P7KAU0_9TELE (tRNA-specific adenosine deaminase 1 n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7KAU0_9TELE)

HSP 1 Score: 114 bits (284), Expect = 2.100e-27
Identity = 61/110 (55.45%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTR---IAGIQVGETFCP 330
            D+HRTGAK V      DP+  G+ YH TGVLR KPG+ E TL LSCSDK+A WTV+G QGALLS  L + LYFS+V+VG   YS+D + RALVTR   ++ +  G   CP
Sbjct:  237 DIHRTGAKCVLGGST-DPRQPGVGYHSTGVLRVKPGRGEPTLSLSCSDKLARWTVLGFQGALLSHYLQEALYFSTVVVGKCPYSQDVMHRALVTRCSHVSDLPAGFRVCP 345
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: R7TN65_CAPTE (A to I editase domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TN65_CAPTE)

HSP 1 Score: 114 bits (286), Expect = 2.450e-27
Identity = 57/107 (53.27%), Postives = 76/107 (71.03%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTRIAGIQVGETFCP 330
            D+HRTGAK VP    QD   EG  YH  G+LRTKPG+ E TL +SCSDK+A W V+G QGALLS+L+S P+Y +SVIVG   Y+E +++RAL+ RI+ ++  +   P
Sbjct:  793 DIHRTGAKCVPGEEKQDRFEEGEGYHSLGLLRTKPGRGERTLSMSCSDKMAKWNVLGIQGALLSILMSAPVYLTSVIVGRCPYNEGAMKRALIDRISELEPCQISAP 899
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BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Match: V4AXC3_LOTGI (A to I editase domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4AXC3_LOTGI)

HSP 1 Score: 113 bits (283), Expect = 3.280e-27
Identity = 53/100 (53.00%), Postives = 73/100 (73.00%), Query Frame = 1 
Query:   13 DLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSCSDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSL-YSEDSLRRALVTRIAGIQ 309
            D+HRTGAK VP   +QD  G+ ++YH  G LR KPG+ + T+CLSCSDKIA W VVG QGALLS  L KP+Y  S+I+G   Y++ ++RR+L+ R++ I+
Sbjct:  261 DIHRTGAKCVPGG-VQDSHGDKVDYHTVGALRIKPGRGDRTICLSCSDKIARWCVVGIQGALLSHFLDKPIYLDSIIIGKCPYNKQAMRRSLIDRVSFIE 359
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101233.258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813M469_9BILA2.410e-2954.74Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A6G1PGH6_9TELE9.080e-2955.45tRNA-specific adenosine deaminase 1 n=1 Tax=Channa... [more]
UPI001D0851ED1.300e-2853.77tRNA-specific adenosine deaminase 1 n=1 Tax=Coccin... [more]
A0A6P7MQS0_BETSP1.320e-2855.75tRNA-specific adenosine deaminase 1 isoform X1 n=4... [more]
A0A3Q1HM40_ANATE3.080e-2855.45Adenosine deaminase tRNA specific 1 n=1 Tax=Anabas... [more]
UPI000BA7F7644.770e-2858.00tRNA-specific adenosine deaminase 1-like isoform X... [more]
UPI001F5EB4F28.330e-2857.00tRNA-specific adenosine deaminase 1 n=2 Tax=Schist... [more]
A0A6P7KAU0_9TELE2.100e-2755.45tRNA-specific adenosine deaminase 1 n=1 Tax=Paramb... [more]
R7TN65_CAPTE2.450e-2753.27A to I editase domain-containing protein (Fragment... [more]
V4AXC3_LOTGI3.280e-2753.00A to I editase domain-containing protein n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101233contigM-pyrifera_M_contig101233:57..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score117.1
Seed ortholog evalue5.4e-24
Seed eggNOG ortholog215358.XP_010747639.1
Preferred nameADAT1
KEGG rclassRC00477
KEGG koko:K15440
KEGG ReactionR10231
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004000,GO:0005488,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008251,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016810,GO:0016814,GO:0019239,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363
EggNOG free text desc.adenosine deaminase
EggNOG OGs38GFV@33154,3BGAF@33208,3CV0U@33213,485PX@7711,490FG@7742,49V3H@7898,KOG2777@1,KOG2777@2759
EC3.5.4.34
COG Functional cat.A
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.7533286-CDS-M-pyrifera_M_contig101233:56..3951622815509.7533286-CDS-M-pyrifera_M_contig101233:56..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101233 57..395 -
1692277443.816877-CDS-M-pyrifera_M_contig101233:56..3951692277443.816877-CDS-M-pyrifera_M_contig101233:56..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101233 57..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101233.258.1prot_M-pyrifera_M_contig101233.258.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101233 57..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101233.258.1

>prot_M-pyrifera_M_contig101233.258.1 ID=prot_M-pyrifera_M_contig101233.258.1|Name=mRNA_M-pyrifera_M_contig101233.258.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=113bp
MAAVDLHRTGAKVVPSSPLQDPKGEGINYHVTGVLRTKPGQVENTLCLSC
SDKIAMWTVVGAQGALLSMLLSKPLYFSSVIVGSLYSEDSLRRALVTRIA
GIQVGETFCPLLL
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mRNA from alignment at M-pyrifera_M_contig101233:57..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101233.258.1 ID=mRNA_M-pyrifera_M_contig101233.258.1|Name=mRNA_M-pyrifera_M_contig101233.258.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig101233:57..395- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAGTGGACCTCCACAGGACAGGCGCCAAAGTAGTGCCGTCTTC
TCCCCTGCAAGACCCAAAAGGGGAAGGCATCAACTACCACGTCACTGGCG
TACTCAGAACGAAGCCAGGCCAGGTGGAGAACACCCTGTGCCTCTCTTGC
AGCGACAAGATTGCCATGTGGACTGTTGTGGGTGCGCAAGGAGCCCTGCT
GAGCATGCTGCTCTCCAAGCCCCTCTACTTCTCCTCCGTCATCGTCGGCA
GCCTCTACTCGGAGGATTCTCTCCGCCGAGCCCTTGTCACGCGCATTGCT
GGCATCCAAGTTGGTGAGACATTCTGCCCATTACTCCTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101233:57..395-

>mRNA_M-pyrifera_M_contig101233.258.1 ID=mRNA_M-pyrifera_M_contig101233.258.1|Name=mRNA_M-pyrifera_M_contig101233.258.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=678bp|location=Sequence derived from alignment at M-pyrifera_M_contig101233:57..395- (Macrocystis pyrifera P11B4 male)
ATGGCAGCAGTGGACCTCCACAGGACAGGCGCCAAAGTAGTGCCGTCTTC
TCCCCTGCAAGACCCAAAAGGGGAAGGCATCAACTACCACGTCACTGGCG
TACTCAGAACGAAGCCAGGCCAGGTGGAGAACACCCTGTGCCTCTCTTGC
AGCGACAAGATTGCCATGTGGACTGTTGTGGGTGCGCAAGGAGCCCTGCT
GAGCATGCTGCTCTCCAAGCCCCTCTACTTCTCCTCCGTCATCGTCGGCA
GCCTCTACTCGGAGGATTCTCTCCGCCGAGCCCTTGTCACGCGCATTGCT
GGCATCCAAGTTGGTGAGACATTCTGCCCATTACTCCTAATGGCAGCAGT
GGACCTCCACAGGACAGGCGCCAAAGTAGTGCCGTCTTCTCCCCTGCAAG
ACCCAAAAGGGGAAGGCATCAACTACCACGTCACTGGCGTACTCAGAACG
AAGCCAGGCCAGGTGGAGAACACCCTGTGCCTCTCTTGCAGCGACAAGAT
TGCCATGTGGACTGTTGTGGGTGCGCAAGGAGCCCTGCTGAGCATGCTGC
TCTCCAAGCCCCTCTACTTCTCCTCCGTCATCGTCGGCAGCCTCTACTCG
GAGGATTCTCTCCGCCGAGCCCTTGTCACGCGCATTGCTGGCATCCAAGT
TGGTGAGACATTCTGCCCATTACTCCTA
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