mRNA_M-pyrifera_M_contig101215.255.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101215.255.1
Unique NamemRNA_M-pyrifera_M_contig101215.255.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: L8H1F7_ACACA (OTUlike cysteine protease protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1F7_ACACA)

HSP 1 Score: 126 bits (317), Expect = 1.110e-32
Identity = 62/138 (44.93%), Postives = 90/138 (65.22%), Query Frame = 1 
Query:    1 LPSTSETFILPARILEDRTLLGNIMDREVVPYLPVLLASVVPDRLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAELTNNIEWYKTTSKHRDPEEWDAAVQMAEKEGSFLEFIHIFAIANVLQRPIVIHASD 414
            LPS   TF++P   ++D  L   ++D E    LP  LA   P  L+P+RT GDGNCLL+A+S A++G+E ++ LLR+++  EL  N EWY   +     E+W   +  A K GS+LEF+HIFA++NV+ RPIVI+A+D
Sbjct:   22 LPSCDTTFLVPISYMDDDAL-NKLVDWETAENLPQSLAEQFPSNLIPLRTTGDGNCLLHAISRALFGVEVFNELLRKRMHEELRANAEWYCKVAPQFGEEDWKRILDNAGKSGSYLEFMHIFALSNVIARPIVIYAND 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A8J1W399_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1W399_9DINO)

HSP 1 Score: 84.0 bits (206), Expect = 3.180e-16
Identity = 52/144 (36.11%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:   13 SETFILPARILEDRTLLGNIMDREVVPYLPVLLASVVPDR-------LVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAELTNNIEWYKTTSKHRDP----EEWDAAVQMAEKEGSFLEFIHIFAIANVLQRPIVIHAS 411
            + TF  PA +         ++D   + YL   LA +   +       LVP+RT  +GNCL NA+S A++G E++   LR Q+ AE+  N  WY    +   P    +E   AVQ A+  G+FL   H+ A+ANVLQRP+++ AS
Sbjct:   42 TSTFACPAHLA------CALVDFRALCYLEEFLAEMATRQPGGRAHTLVPLRTAANGNCLTNAVSLAIFGSEEHSESLRTQMAAEIEQNKSWYAEKLEFAHPGAGEKELAEAVQRAQTPGAFLTTAHMVALANVLQRPVILVAS 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A8J2BDN4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2BDN4_9DINO)

HSP 1 Score: 80.5 bits (197), Expect = 4.820e-15
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1 
Query:   79 REVVPYLPVLLASVVPDRLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAELTNNIEWY--KTTSKHRDPE----EWDAAVQMAEKEGSFLEFIHIFAIANVLQRPIVIHAS 411
            +E+    P   A+  P  +VP+RT  DGNCL+NA+S A+ G E +  +LR+++ AELT+N  WY  K    H   E    E + A Q A    +FL  +H+ A+ANVL+RP+++ AS
Sbjct:   41 QEIAQRNPRSPATNEPAIVVPLRTSPDGNCLVNAVSIAVSGTEAHSGVLREKMAAELTDNGNWYHNKLVIAHGTAEAATKELEQAKQQASSPQAFLGSLHMLALANVLERPVILVAS 157
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A091HXK5_CALAN (Ubiquitinyl hydrolase 1 n=1 Tax=Calypte anna TaxID=9244 RepID=A0A091HXK5_CALAN)

HSP 1 Score: 74.3 bits (181), Expect = 8.480e-13
Identity = 44/122 (36.07%), Postives = 63/122 (51.64%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAELTNN------IEWYKTTSKHRD-------------PEEWDAAVQMAEKEGS---------FLEFIHIFAIANVLQRPIVIHAS 411
            RLVP++T GDGNCL++A S  MWG+E    +LR+ L + L  N      + W +   K +D              EEW+  V+M   E S          LE IHIF +AN+L+RP+++ A 
Sbjct:   92 RLVPLKTNGDGNCLMHAASQYMWGIEDIDLVLRKTLFSALRENDTRNFKLRWQREAVKSQDFIETGLHYDTRNWEEEWEYLVEMTSPETSGARNRLPYNALEEIHIFILANILRRPVIVLAD 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A7K4JJR8_GEOCA (Ubiquitinyl hydrolase 1 (Fragment) n=7 Tax=Neognathae TaxID=8825 RepID=A0A7K4JJR8_GEOCA)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-12
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAEL----TNNIE--WYKTTSKHRD-------------PEEWDAAVQMAEKEGS---------FLEFIHIFAIANVLQRPIVIHAS 411
            RLVP++T GDGNCLL+A S  MWG+E    +LR+ L + L    T N++  W +   K ++              EEW+  ++M   E S          LE IHIF +ANVL+RP+++ A 
Sbjct:   92 RLVPLKTSGDGNCLLHAASQYMWGIEDIDLILRKTLFSALRETDTQNLKLRWQREAIKSQEFVETGLHYDTRNWEEEWEYLIEMTSPETSGARNRLPYNALEEIHIFILANVLRRPVIVLAD 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A7K8XTJ9_9PICI (Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Piciformes TaxID=9219 RepID=A0A7K8XTJ9_9PICI)

HSP 1 Score: 73.2 bits (178), Expect = 2.150e-12
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAEL----TNN--IEWYKTTSKHRD-------------PEEWDAAVQMAEKEGS---------FLEFIHIFAIANVLQRPIVIHAS 411
            RLVP++T GDGNCLL+A S  MWG+E    +LR+ L + L    T N  + W +   K ++              EEW+  ++M   E S          LE IHIF +AN+L+RPI++ A 
Sbjct:   92 RLVPLKTSGDGNCLLHAASQYMWGIEDIDLVLRRTLFSALREIDTQNFKLRWQREAMKSQEFVETGLQYDTRNWEEEWEYLIEMTSPETSGARNRLPYNALEEIHIFVLANILRRPIIVLAD 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A8C5TJ43_9PASS (Ubiquitinyl hydrolase 1 n=1 Tax=Malurus cyaneus samueli TaxID=2593467 RepID=A0A8C5TJ43_9PASS)

HSP 1 Score: 71.2 bits (173), Expect = 2.620e-12
Identity = 44/119 (36.97%), Postives = 63/119 (52.94%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAEL----TNN--IEWYKTTSKHRD-------------PEEWDAAVQMAEKEGS---------FLEFIHIFAIANVLQRPIVI 402
            RLVP++T GDGNCLL+A S  MWG+E    +LR+ L + L    T N  + W +   K ++              EEW+  ++M   E S          LE IHIF IAN+L+RP+++
Sbjct:   92 RLVPLKTNGDGNCLLHAASQYMWGIEDIDLILRKTLFSALREIDTRNFKLRWQREAVKSQEFVETGLHYDTRNWEEEWEYLIEMTSPEISGARNRLPYNALEEIHIFVIANILRRPVIV 210
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A6I9XUC7_9SAUR (Ubiquitinyl hydrolase 1 n=14 Tax=Colubroidea TaxID=34989 RepID=A0A6I9XUC7_9SAUR)

HSP 1 Score: 72.4 bits (176), Expect = 3.990e-12
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAEL----TNN--IEWYKTTSKHRD-------------PEEWDAAVQMAEKEGSF---------LEFIHIFAIANVLQRPIVIHAS 411
            +L+P++T GDGNCL++A S  MWG++    LLR+ L + L    T N  + W + T K ++              +EWD  ++MA  E S          LE IHIF +ANVL+RPI++ A 
Sbjct:   92 KLMPLKTNGDGNCLMHAASQYMWGVQDVDLLLRKTLFSVLKEADTRNFKLRWQRETLKSQEFVATGLCYDTRNWDDEWDNLIKMASAETSVAHTGLQYTCLEEIHIFVLANVLRRPIIVVAD 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A8C5TKW9_9PASS (Ubiquitinyl hydrolase 1 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8C5TKW9_9PASS)

HSP 1 Score: 72.0 bits (175), Expect = 5.050e-12
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAEL----TNN--IEWYKTTSKHRD-------------PEEWDAAVQMAEKEGS---------FLEFIHIFAIANVLQRPIVIHAS 411
            RLVP++T GDGNCLL+A S  MWG+E    +LR+ L + L    T N  + W +   K ++              EEW+  ++M   E S          LE IHIF IAN+L+RP+++ A 
Sbjct:   92 RLVPLKTNGDGNCLLHAASQYMWGIEDIDLILRKTLFSALREIDTRNFKLRWQREAVKSQEFVETGLHYDTRNWEEEWEYLIEMTSPEISGARNRLPYNALEEIHIFVIANILRRPVIVLAD 213
[Close]
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Match: A0A8C6Z735_NOTPE (Ubiquitinyl hydrolase 1 n=3 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6Z735_NOTPE)

HSP 1 Score: 72.0 bits (175), Expect = 5.100e-12
Identity = 44/122 (36.07%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:  130 RLVPMRTCGDGNCLLNALSTAMWGLEKYHRLLRQQLLAEL----TNN--IEWYKTTSKHRD-------------PEEWDAAVQMAEKEGSF---------LEFIHIFAIANVLQRPIVIHAS 411
            +LVP++T GDGNCL++A S  MWG+E    +LR+ L + L    T N  + W +   K +D              EEW+  ++M   E S          LE IHIF +AN+L+RPI++ A 
Sbjct:   92 KLVPLKTNGDGNCLMHAASQYMWGIEDIDLILRKTLFSTLREIDTRNFKLRWQREALKSQDFVETGLHYDTRNWEEEWEYLIEMTSPETSAARNRLPYNALEEIHIFVLANILRRPIIVLAD 213
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101215.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8H1F7_ACACA1.110e-3244.93OTUlike cysteine protease protein n=1 Tax=Acantham... [more]
A0A8J1W399_9DINO3.180e-1636.11Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A8J2BDN4_9DINO4.820e-1540.17Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A091HXK5_CALAN8.480e-1336.07Ubiquitinyl hydrolase 1 n=1 Tax=Calypte anna TaxID... [more]
A0A7K4JJR8_GEOCA2.150e-1236.89Ubiquitinyl hydrolase 1 (Fragment) n=7 Tax=Neognat... [more]
A0A7K8XTJ9_9PICI2.150e-1236.89Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Picifor... [more]
A0A8C5TJ43_9PASS2.620e-1236.97Ubiquitinyl hydrolase 1 n=1 Tax=Malurus cyaneus sa... [more]
A0A6I9XUC7_9SAUR3.990e-1236.89Ubiquitinyl hydrolase 1 n=14 Tax=Colubroidea TaxID... [more]
A0A8C5TKW9_9PASS5.050e-1236.89Ubiquitinyl hydrolase 1 n=2 Tax=Passeriformes TaxI... [more]
A0A8C6Z735_NOTPE5.100e-1236.07Ubiquitinyl hydrolase 1 n=3 Tax=Nothoprocta perdic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101215contigM-pyrifera_M_contig101215:127..672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score73.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog9031.ENSGALP00000022443
Preferred nameTNFAIP3
KEGG koko:K11859
KEGG Pathwayko04064,ko04217,ko04621,ko04657,ko04668,ko05162,ko05169,map04064,map04217,map04621,map04657,map04668,map05162,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000209,GO:0000302,GO:0000323,GO:0001775,GO:0001776,GO:0001782,GO:0001817,GO:0001818,GO:0001922,GO:0001932,GO:0001933,GO:0001959,GO:0002020,GO:0002218,GO:0002221,GO:0002237,GO:0002252,GO:0002253,GO:0002260,GO:0002263,GO:0002285,GO:0002312,GO:0002313,GO:0002315,GO:0002335,GO:0002366,GO:0002376,GO:0002507,GO:0002520,GO:0002521,GO:0002631,GO:0002632,GO:0002634,GO:0002637,GO:0002676,GO:0002677,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002695,GO:0002697,GO:0002698,GO:0002700,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0002819,GO:0002822,GO:0002831,GO:0002832,GO:0003674,GO:0003824,GO:0004842,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005773,GO:0005829,GO:0006355,GO:0006464,GO:0006469,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006955,GO:0006979,GO:0007154,GO:0007162,GO:0007165,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008284,GO:0008285,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009636,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010243,GO:0010468,GO:0010470,GO:0010506,GO:0010507,GO:0010556,GO:0010563,GO:0010604,GO:0010605,GO:0010646,GO:0010648,GO:0010803,GO:0010941,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0016787,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019783,GO:0019787,GO:0019899,GO:0019900,GO:0019941,GO:0022407,GO:0022408,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023057,GO:0030097,GO:0030098,GO:0030154,GO:0030155,GO:0030163,GO:0030183,GO:0030522,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031331,GO:0031347,GO:0031348,GO:0031349,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031593,GO:0031664,GO:0031665,GO:0032088,GO:0032101,GO:0032102,GO:0032182,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032479,GO:0032480,GO:0032495,GO:0032496,GO:0032501,GO:0032502,GO:0032651,GO:0032652,GO:0032663,GO:0032675,GO:0032680,GO:0032691,GO:0032692,GO:0032703,GO:0032715,GO:0032720,GO:0033036,GO:0033365,GO:0033554,GO:0033673,GO:0033993,GO:0034103,GO:0034104,GO:0034114,GO:0034115,GO:0034121,GO:0034122,GO:0034135,GO:0034136,GO:0034139,GO:0034140,GO:0034143,GO:0034144,GO:0034147,GO:0034148,GO:0034599,GO:0034613,GO:0034614,GO:0035556,GO:0035690,GO:0035871,GO:0035872,GO:0036211,GO:0036459,GO:0042113,GO:0042127,GO:0042176,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042542,GO:0042592,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043122,GO:0043124,GO:0043130,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043433,GO:0043549,GO:0043621,GO:0043632,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045124,GO:0045184,GO:0045321,GO:0045732,GO:0045736,GO:0045765,GO:0045779,GO:0045786,GO:0045824,GO:0045859,GO:0045936,GO:0045995,GO:0046649,GO:0046677,GO:0046850,GO:0046851,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048660,GO:0048662,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050678,GO:0050679,GO:0050688,GO:0050691,GO:0050727,GO:0050728,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050866,GO:0050869,GO:0050896,GO:0051090,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051252,GO:0051259,GO:0051338,GO:0051348,GO:0051603,GO:0051641,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060255,GO:0060548,GO:0060759,GO:0061041,GO:0061043,GO:0061578,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070011,GO:0070301,GO:0070423,GO:0070424,GO:0070425,GO:0070428,GO:0070429,GO:0070432,GO:0070433,GO:0070530,GO:0070536,GO:0070587,GO:0070646,GO:0070647,GO:0070663,GO:0070664,GO:0070727,GO:0070887,GO:0070936,GO:0071108,GO:0071216,GO:0071219,GO:0071222,GO:0071236,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0071900,GO:0071901,GO:0071947,GO:0072573,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0080134,GO:0090289,GO:0090291,GO:0097237,GO:0101005,GO:0140030,GO:0140096,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902041,GO:1902042,GO:1902531,GO:1902532,GO:1903034,GO:1903320,GO:1903321,GO:1903362,GO:1903364,GO:1903506,GO:1903555,GO:1903556,GO:1904029,GO:1904030,GO:1904035,GO:1904036,GO:2000026,GO:2000027,GO:2000112,GO:2000345,GO:2000347,GO:2000348,GO:2000349,GO:2000351,GO:2000352,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.Tumor necrosis factor, alpha-induced protein 3
EggNOG OGs39K3I@33154,3BHSV@33208,3CZKN@33213,4824F@7711,496MW@7742,4GUGD@8782,KOG4345@1,KOG4345@2759
EC3.4.19.12
COG Functional cat.T
Best tax levelAves
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Exons3
Model size414
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101215.255.1prot_M-pyrifera_M_contig101215.255.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101215 127..672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.5968363-CDS-M-pyrifera_M_contig101215:126..2601622815509.5968363-CDS-M-pyrifera_M_contig101215:126..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101215 127..260 +
1692277443.74821-CDS-M-pyrifera_M_contig101215:126..2601692277443.74821-CDS-M-pyrifera_M_contig101215:126..260Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101215 127..260 +
1622815509.609511-CDS-M-pyrifera_M_contig101215:328..4491622815509.609511-CDS-M-pyrifera_M_contig101215:328..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101215 329..449 +
1692277443.7591445-CDS-M-pyrifera_M_contig101215:328..4491692277443.7591445-CDS-M-pyrifera_M_contig101215:328..449Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101215 329..449 +
1622815509.6237025-CDS-M-pyrifera_M_contig101215:513..6721622815509.6237025-CDS-M-pyrifera_M_contig101215:513..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101215 514..672 +
1692277443.7670674-CDS-M-pyrifera_M_contig101215:513..6721692277443.7670674-CDS-M-pyrifera_M_contig101215:513..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101215 514..672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101215.255.1

>prot_M-pyrifera_M_contig101215.255.1 ID=prot_M-pyrifera_M_contig101215.255.1|Name=mRNA_M-pyrifera_M_contig101215.255.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
LPSTSETFILPARILEDRTLLGNIMDREVVPYLPVLLASVVPDRLVPMRT
CGDGNCLLNALSTAMWGLEKYHRLLRQQLLAELTNNIEWYKTTSKHRDPE
EWDAAVQMAEKEGSFLEFIHIFAIANVLQRPIVIHASD
back to top

mRNA from alignment at M-pyrifera_M_contig101215:127..672+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101215.255.1 ID=mRNA_M-pyrifera_M_contig101215.255.1|Name=mRNA_M-pyrifera_M_contig101215.255.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=546bp|location=Sequence derived from alignment at M-pyrifera_M_contig101215:127..672+ (Macrocystis pyrifera P11B4 male)
CTCCCCTCCACATCAGAGACCTTCATCCTGCCCGCTCGCATCCTGGAGGA
TCGGACGCTGCTGGGCAACATCATGGACCGCGAAGTGGTGCCCTATCTGC
CTGTGTTGCTTGCCTCGGTGGTGCCCGACCGCCTGTACGTTGGCGCTCGC
CTACCCGCCGAATGCCTGCATGTGACTTGTGTCTGACGGTATGGCGACGC
AGGGTCCCGATGCGCACATGCGGCGACGGCAACTGTCTCCTCAATGCGCT
GTCCACTGCGATGTGGGGGCTGGAGAAGTACCACCGCCTCCTTCGGCAGC
AACTCCTGGCCGAGCTCACCAACGTATGCTGGGCATGAAGGCTGCTGCGA
GCGCGGCTGCAGTGGCGCTGACACTGGCTTATGACAGAACATCGAGTGGT
ACAAGACCACTTCGAAGCACAGGGACCCAGAGGAGTGGGACGCGGCCGTG
CAAATGGCCGAGAAGGAGGGCAGCTTCCTCGAGTTCATCCACATCTTCGC
GATTGCCAACGTCCTGCAGCGGCCTATCGTCATTCACGCCTCAGAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101215:127..672+

>mRNA_M-pyrifera_M_contig101215.255.1 ID=mRNA_M-pyrifera_M_contig101215.255.1|Name=mRNA_M-pyrifera_M_contig101215.255.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig101215:127..672+ (Macrocystis pyrifera P11B4 male)
CTCCCCTCCACATCAGAGACCTTCATCCTGCCCGCTCGCATCCTGGAGGA
TCGGACGCTGCTGGGCAACATCATGGACCGCGAAGTGGTGCCCTATCTGC
CTGTGTTGCTTGCCTCGGTGGTGCCCGACCGCCTCTCCCCTCCACATCAG
AGACCTTCATCCTGCCCGCTCGCATCCTGGAGGATCGGACGCTGCTGGGC
AACATCATGGACCGCGAAGTGGTGCCCTATCTGCCTGTGTTGCTTGCCTC
GGTGGTGCCCGACCGCCTGGTCCCGATGCGCACATGCGGCGACGGCAACT
GTCTCCTCAATGCGCTGTCCACTGCGATGTGGGGGCTGGAGAAGTACCAC
CGCCTCCTTCGGCAGCAACTCCTGGCCGAGCTCACCAACGGTCCCGATGC
GCACATGCGGCGACGGCAACTGTCTCCTCAATGCGCTGTCCACTGCGATG
TGGGGGCTGGAGAAGTACCACCGCCTCCTTCGGCAGCAACTCCTGGCCGA
GCTCACCAACAACATCGAGTGGTACAAGACCACTTCGAAGCACAGGGACC
CAGAGGAGTGGGACGCGGCCGTGCAAATGGCCGAGAAGGAGGGCAGCTTC
CTCGAGTTCATCCACATCTTCGCGATTGCCAACGTCCTGCAGCGGCCTAT
CGTCATTCACGCCTCAGACAACATCGAGTGGTACAAGACCACTTCGAAGC
ACAGGGACCCAGAGGAGTGGGACGCGGCCGTGCAAATGGCCGAGAAGGAG
GGCAGCTTCCTCGAGTTCATCCACATCTTCGCGATTGCCAACGTCCTGCA
GCGGCCTATCGTCATTCACGCCTCAGAC
back to top