mRNA_M-pyrifera_M_contig10119.254.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10119.254.1
Unique NamemRNA_M-pyrifera_M_contig10119.254.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: D7FGX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 5.930e-39
Identity = 72/103 (69.90%), Postives = 88/103 (85.44%), Query Frame = 1 
Query:    1 VVGFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPYNANKSRHMMVVGGEAVEGGXXXXXGVLVSMNVVEVLAEIKVLGGDMLESVHVS 309
            VVGFD IGDLV+ELRR+FGHLAVFFSPGSAG++G+IG+VWRP+AFVPRP N N+S+HMMVVGGE   GG       +  +NVVEVL+E+KV+GGDM+E+VHVS
Sbjct: 1163 VVGFDPIGDLVSELRRRFGHLAVFFSPGSAGASGIIGLVWRPTAFVPRPNNVNRSQHMMVVGGEGARGGGEVAT--MSVLNVVEVLSEMKVVGGDMIEAVHVS 1263
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: A0A836CBT1_9STRA (Nrap protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.010e-9
Identity = 46/109 (42.20%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:    7 GFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPYNANKSRHMMVVGGEAVEGGXXXXXG-----------VLVSMNVVEVLAEIKVLGGDMLESV 300
            G D +  LV ELRR+FGHLA+F     AG  G + VVWRP+AF+P P     +R+       AV G XXXXX             L   NV +VLAE++ + GDM ++V
Sbjct: 1322 GLDPVAQLVRELRRRFGHLALFLRDALAG--GSVAVVWRPAAFLPAPLAPLAARYAA----PAVAGXXXXXXXXXXXXXALPVDALAVPNVAQVLAEMRAVAGDMADAV 1424
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: A0A836CCE1_9STRA (Nrap protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCE1_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.920e-8
Identity = 42/104 (40.38%), Postives = 58/104 (55.77%), Query Frame = 1 
Query:    7 GFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPYNANKSRHMMVVGGEAVEGGXXXXXG------VLVSMNVVEVLAEIKVLGGDMLESV 300
            G D +  LV ELRR+FGHLA+F     AGS+  + VVWRP+AF+P P     +R+            XXXXX        L   NV ++LAE++ + GDM ++V
Sbjct:  969 GLDPVAQLVRELRRRFGHLALFLRDALAGSS--VAVVWRPAAFLPAPLAPLAARYAAXXXXXXXXXXXXXXXXXALPADALSVPNVAQILAEMRAVAGDMADAV 1070
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: F6YWB6_CIOIN (Nucleolar protein 6 n=1 Tax=Ciona intestinalis TaxID=7719 RepID=F6YWB6_CIOIN)

HSP 1 Score: 53.5 bits (127), Expect = 5.160e-6
Identity = 31/100 (31.00%), Postives = 54/100 (54.00%), Query Frame = 1 
Query:    1 VVGFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPYNANKSRHMMVVGGEAVEGGXXXXXGVLVSMNVVEVLAEIKVLGGDMLESV 300
            VV FD +   V +L+  F  LA+FF   + G   M+GV+W+P+AF P+P+NA+ S  ++   G  V              +V  ++ + K+LG  +++S+
Sbjct:  738 VVNFDPMQLYVNDLKASFSELAMFFYDINGGC--MVGVLWKPTAFQPKPFNASSSSCILQDDGNVVP-------------DVPSIVEDFKILGDGVVDSI 822
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: L8GDM1_ACACA (Nucleolar RNAassociated protein alpha isoform, putative (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GDM1_ACACA)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-6
Identity = 23/49 (46.94%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 VGFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPY 150
            VG D + + ++ELR +FGHLA+FF     G   +IGVVW+P  F P+P+
Sbjct:  344 VGLDLVENYLSELRARFGHLALFFHNALEGR--VIGVVWKPGTFAPKPF 390
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: A0A7J8IPS5_ROUAE (Nucleolar protein 6 n=6 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8IPS5_ROUAE)

HSP 1 Score: 51.2 bits (121), Expect = 3.400e-5
Identity = 32/103 (31.07%), Postives = 57/103 (55.34%), Query Frame = 1 
Query:    1 VVGFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPYNANKSRHMMVVG--GEAVEGGXXXXXGVLVSMNVVEVLAEIKVLGGDMLESVH 303
            V+G+D     +A+LR+ FG LA+FF     G   +IGV+W P++F P+ + A+ ++  MVV   GE+V           +  N+  +L +  +LG  ++++V 
Sbjct: 1049 VLGYDPPQLYLAQLRKAFGELALFFYDQHGGE--VIGVLWNPTSFRPQHFKASNTKGHMVVSQSGESV-----------IVPNIEAILEDFAILGEGLVQTVE 1138
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BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Match: A0A397U274_9GLOM (U3 small nucleolar RNA-associated protein 22 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397U274_9GLOM)

HSP 1 Score: 50.8 bits (120), Expect = 4.640e-5
Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    1 VVGFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPYNANKSRHMMVV 183
            ++GFD +   + ELR+ +  +A+FF     G+  +IGVVW+P+ F PRP+ AN   + ++V
Sbjct: 1038 MIGFDPVEYYLDELRKLYSDVALFFHDKHGGT--IIGVVWKPTNFTPRPWKANTEINSILV 1096
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10119.254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FGX0_ECTSI5.930e-3969.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CBT1_9STRA3.010e-942.20Nrap protein-domain-containing protein n=1 Tax=Tri... [more]
A0A836CCE1_9STRA1.920e-840.38Nrap protein-domain-containing protein n=1 Tax=Tri... [more]
F6YWB6_CIOIN5.160e-631.00Nucleolar protein 6 n=1 Tax=Ciona intestinalis Tax... [more]
L8GDM1_ACACA6.670e-646.94Nucleolar RNAassociated protein alpha isoform, put... [more]
A0A7J8IPS5_ROUAE3.400e-531.07Nucleolar protein 6 n=6 Tax=Rousettus aegyptiacus ... [more]
A0A397U274_9GLOM4.640e-537.70U3 small nucleolar RNA-associated protein 22 n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10119contigM-pyrifera_M_contig10119:9680..9991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score149.1
Seed ortholog evalue1.2e-33
Seed eggNOG ortholog2880.D7FGX0
Preferred nameNOL6
KEGG koko:K08018,ko:K14544
KEGG Pathwayko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.tRNA export from nucleus
EggNOG OGsKOG2054@1,KOG2054@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.5549483-CDS-M-pyrifera_M_contig10119:9679..99911622815509.5549483-CDS-M-pyrifera_M_contig10119:9679..9991Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10119 9680..9991 -
1692277443.7317472-CDS-M-pyrifera_M_contig10119:9679..99911692277443.7317472-CDS-M-pyrifera_M_contig10119:9679..9991Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10119 9680..9991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10119.254.1prot_M-pyrifera_M_contig10119.254.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10119 9680..9991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10119.254.1

>prot_M-pyrifera_M_contig10119.254.1 ID=prot_M-pyrifera_M_contig10119.254.1|Name=mRNA_M-pyrifera_M_contig10119.254.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
VVGFDAIGDLVAELRRQFGHLAVFFSPGSAGSAGMIGVVWRPSAFVPRPY
NANKSRHMMVVGGEAVEGGEGGEGGVLVSMNVVEVLAEIKVLGGDMLESV
HVS*
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mRNA from alignment at M-pyrifera_M_contig10119:9680..9991-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10119.254.1 ID=mRNA_M-pyrifera_M_contig10119.254.1|Name=mRNA_M-pyrifera_M_contig10119.254.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig10119:9680..9991- (Macrocystis pyrifera P11B4 male)
GTCGTCGGGTTCGATGCGATCGGCGACTTGGTGGCGGAACTCCGACGACA
GTTCGGACACCTCGCTGTGTTTTTCTCGCCCGGGTCGGCCGGGTCTGCTG
GCATGATTGGCGTTGTGTGGAGACCCTCGGCGTTTGTGCCCAGGCCGTAC
AACGCCAACAAGTCGCGCCATATGATGGTGGTTGGCGGGGAGGCGGTAGA
AGGAGGGGAGGGGGGAGAGGGAGGCGTTTTGGTGTCGATGAATGTGGTGG
AAGTCTTGGCGGAGATTAAGGTGCTTGGTGGGGACATGCTTGAGAGCGTT
CATGTTTCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10119:9680..9991-

>mRNA_M-pyrifera_M_contig10119.254.1 ID=mRNA_M-pyrifera_M_contig10119.254.1|Name=mRNA_M-pyrifera_M_contig10119.254.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig10119:9680..9991- (Macrocystis pyrifera P11B4 male)
GTCGTCGGGTTCGATGCGATCGGCGACTTGGTGGCGGAACTCCGACGACA
GTTCGGACACCTCGCTGTGTTTTTCTCGCCCGGGTCGGCCGGGTCTGCTG
GCATGATTGGCGTTGTGTGGAGACCCTCGGCGTTTGTGCCCAGGCCGTAC
AACGCCAACAAGTCGCGCCATATGATGGTGGTTGGCGGGGAGGCGGTAGA
AGGAGGGGAGGGGGGAGAGGGAGGCGTTTTGGTGTCGATGAATGTGGTGG
AAGTCTTGGCGGAGATTAAGGTGCTTGGTGGGGACATGCTTGAGAGCGTT
CATGTTTCTTGAGTCGTCGGGTTCGATGCGATCGGCGACTTGGTGGCGGA
ACTCCGACGACAGTTCGGACACCTCGCTGTGTTTTTCTCGCCCGGGTCGG
CCGGGTCTGCTGGCATGATTGGCGTTGTGTGGAGACCCTCGGCGTTTGTG
CCCAGGCCGTACAACGCCAACAAGTCGCGCCATATGATGGTGGTTGGCGG
GGAGGCGGTAGAAGGAGGGGAGGGGGGAGAGGGAGGCGTTTTGGTGTCGA
TGAATGTGGTGGAAGTCTTGGCGGAGATTAAGGTGCTTGGTGGGGACATG
CTTGAGAGCGTTCATGTTTCTTGA
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