mRNA_M-pyrifera_M_contig101172.252.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101172.252.1
Unique NamemRNA_M-pyrifera_M_contig101172.252.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101172.252.1 vs. uniprot
Match: A0A6H5KNP4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNP4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.380e-35
Identity = 75/157 (47.77%), Postives = 99/157 (63.06%), Query Frame = 1 
Query:    1 FQLLFGRSPRTSLDMLVPQMDDTETTGGFENFIEERRHNLREAREALERIHEGREKARRRRNALIQRPSAGTRVVTGDLVLARESDSSLHRQGMGPKLVHEKWTGPWKVVEVVIEGLSVVIEMEGRTTRSRTVSAPSLKPFYTRPSDLRHPMEDEFA 471
            +Q+LFGR+PRT LD L P +D++ +  G E+ +EE R    E  +AL +    + + R  +NA I R S G +   GD VL RES S+LHR G+ PKL H+ +TGPW VV VV  GLS  + + GR  R RTV A  +K FY+RP DLR P EDEF+
Sbjct: 1369 YQMLFGRAPRTPLDQLSPSLDNSGSALGLESSVEETRRKHIEVTDALRKRQAEKNRHRDLQNARISRASPGAKSRVGDKVLVRESASTLHRDGVHPKLAHDHFTGPWVVVNVVRMGLSFTVRLHGRQVRQRTVVASDMKQFYSRPLDLRLPFEDEFS 1525
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BLAST of mRNA_M-pyrifera_M_contig101172.252.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.400e-35
Identity = 74/156 (47.44%), Postives = 95/156 (60.90%), Query Frame = 1 
Query:    4 QLLFGRSPRTSLDMLVPQMDDTETTGGFENFIEERRHNLREAREALERIHEGREKARRRRNALIQRPSAGTRVVTGDLVLARESDSSLHRQGMGPKLVHEKWTGPWKVVEVVIEGLSVVIEMEGRTTRSRTVSAPSLKPFYTRPSDLRHPMEDEFA 471
            Q+LFGRSPRT LD L P +D++    G E  +EE RH   +  EAL +    + + R  +NA   R S G +   GD VL RES S+LHR G  PKL H+ +TGPW V+ VV  GLS  + +  R  R RTV+A  +KPFY+RP D+R   EDEFA
Sbjct: 1916 QMLFGRSPRTPLDQLAPSLDNSGAALGLEPSVEETRHKHIQVTEALRKRQAEKNRQRNLQNARFSRTSPGAKAKEGDKVLVRESASTLHRDGTHPKLAHDHFTGPWVVITVVCAGLSFTVRLNERHVRQRTVAASDMKPFYSRPLDVRLAFEDEFA 2071
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BLAST of mRNA_M-pyrifera_M_contig101172.252.1 vs. uniprot
Match: A0A6H5KNQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 6.400e-28
Identity = 66/159 (41.51%), Postives = 90/159 (56.60%), Query Frame = 1 
Query:    1 FQLLFGRSPRTSLDMLVPQMDDTETTGGFENFIEERRHNLREAREALERIHEGREKARRRRNALIQRPSAGTRVVTGDLVLARESDSSLHRQGMGPKLVHEKWTGPWKVVEVVIEGLSVVIEMEGRTTRSRTVSAPSLKPFYTRPSDLRHPMEDEFAQM 477
            +Q+LFG  PR+ +D+L   +D      G E  +EE+ H  +E    L +  E   K   R NA I R S G +   GD VL RE+  SL+R  + PKL HE +TGPWKVV V+ E L   ++M GR  R R V A  +KPF+ RP+ L+   EDEF+ +
Sbjct: 1345 YQILFGLPPRSHIDLLAQPLDGASFGQGLEITVEEQHHMTQEI---LAKRQEALTKQSERHNAKIGRESPGAKAQVGDFVLVRETPVSLYRDSLHPKLAHEHFTGPWKVVNVLPERLCFTVQMNGRRVRQRRVVAADVKPFHQRPAHLQLEYEDEFSHL 1500
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BLAST of mRNA_M-pyrifera_M_contig101172.252.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 2.330e-6
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 FQLLFGRSPRTSLDMLVPQMDDTETTGGFENFIEERRHNLRE 126
            F+ LFGR PRTSLD LVP  D+ +   G +NF+E R+HNLRE
Sbjct:  786 FEFLFGRKPRTSLDSLVPLTDEMDQERGVDNFVERRKHNLRE 827
[Close]
BLAST of mRNA_M-pyrifera_M_contig101172.252.1 vs. uniprot
Match: A0A0B7N604_9FUNG (Integrase_H2C2 domain-containing protein n=1 Tax=Parasitella parasitica TaxID=35722 RepID=A0A0B7N604_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 1.280e-5
Identity = 43/161 (26.71%), Postives = 78/161 (48.45%), Query Frame = 1 
Query:    1 FQLLFGRSPRTSL-DMLVPQMDDTETTGGFENFIEERRHNLREAREALERIHEGREKARRRRNALIQRPSAGTRVVTGDLVLARESDSSLHRQGMGPKLVHEKWTGPWKVVEVVI-EGLSVVIEMEGRTTRSRTVSAPSLKPFYTRPSDLRHPMEDEFAQM 477
            F+++FGR  R  L   ++P+  +      + +F+ ER   +    +AL  I   +E+  ++ N   +R      +  GDLV+ +       + G  PK   E+WTGPWK++EV   EG +  +  +    R+ T +   L+ FY R +D+  P + +F  +
Sbjct:  261 FEVMFGRKARLPLLPSIIPENPEASGVQEWSDFLNERIPIIHS--KALMNIKHAQEQQEKQYN---KRARGIITLKVGDLVMRKNHA----KMGSFPK---ERWTGPWKILEVKNKEGAAYKLARQATPNRTTTANVADLRIFYERENDVVPPKQSQFQSL 409
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101172.252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KNP4_9PHAE1.380e-3547.77Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K3V4_9PHAE1.400e-3547.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNQ8_9PHAE6.400e-2841.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B2_9PHAE2.330e-659.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A0B7N604_9FUNG1.280e-526.71Integrase_H2C2 domain-containing protein n=1 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101172contigM-pyrifera_M_contig101172:196..672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size477
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.4309428-CDS-M-pyrifera_M_contig101172:195..6721622815509.4309428-CDS-M-pyrifera_M_contig101172:195..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101172 196..672 -
1692277443.654985-CDS-M-pyrifera_M_contig101172:195..6721692277443.654985-CDS-M-pyrifera_M_contig101172:195..672Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101172 196..672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101172.252.1prot_M-pyrifera_M_contig101172.252.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101172 196..672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101172.252.1

>prot_M-pyrifera_M_contig101172.252.1 ID=prot_M-pyrifera_M_contig101172.252.1|Name=mRNA_M-pyrifera_M_contig101172.252.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=159bp
FQLLFGRSPRTSLDMLVPQMDDTETTGGFENFIEERRHNLREAREALERI
HEGREKARRRRNALIQRPSAGTRVVTGDLVLARESDSSLHRQGMGPKLVH
EKWTGPWKVVEVVIEGLSVVIEMEGRTTRSRTVSAPSLKPFYTRPSDLRH
PMEDEFAQM
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mRNA from alignment at M-pyrifera_M_contig101172:196..672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101172.252.1 ID=mRNA_M-pyrifera_M_contig101172.252.1|Name=mRNA_M-pyrifera_M_contig101172.252.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=477bp|location=Sequence derived from alignment at M-pyrifera_M_contig101172:196..672- (Macrocystis pyrifera P11B4 male)
TTCCAGCTCTTGTTTGGCCGCAGCCCGCGCACGTCCCTCGACATGTTAGT
GCCTCAGATGGATGACACAGAGACCACGGGAGGCTTCGAAAACTTTATCG
AAGAGCGCCGGCACAACCTACGGGAGGCCAGGGAGGCACTCGAGAGGATA
CACGAGGGCAGGGAAAAGGCACGGCGACGCCGCAACGCATTGATTCAGCG
ACCATCGGCGGGCACTCGAGTCGTGACGGGCGACCTCGTCCTGGCGAGGG
AGAGCGACAGCTCGCTCCACCGGCAGGGCATGGGGCCTAAACTGGTCCAT
GAGAAGTGGACTGGTCCGTGGAAGGTGGTAGAGGTAGTGATTGAGGGCCT
GAGCGTCGTCATCGAGATGGAAGGCAGGACGACGCGCTCCAGGACGGTCT
CCGCTCCTTCGCTGAAGCCATTTTACACGAGACCGTCTGATCTTCGGCAC
CCCATGGAGGATGAGTTCGCGCAGATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101172:196..672-

>mRNA_M-pyrifera_M_contig101172.252.1 ID=mRNA_M-pyrifera_M_contig101172.252.1|Name=mRNA_M-pyrifera_M_contig101172.252.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=954bp|location=Sequence derived from alignment at M-pyrifera_M_contig101172:196..672- (Macrocystis pyrifera P11B4 male)
TTCCAGCTCTTGTTTGGCCGCAGCCCGCGCACGTCCCTCGACATGTTAGT
GCCTCAGATGGATGACACAGAGACCACGGGAGGCTTCGAAAACTTTATCG
AAGAGCGCCGGCACAACCTACGGGAGGCCAGGGAGGCACTCGAGAGGATA
CACGAGGGCAGGGAAAAGGCACGGCGACGCCGCAACGCATTGATTCAGCG
ACCATCGGCGGGCACTCGAGTCGTGACGGGCGACCTCGTCCTGGCGAGGG
AGAGCGACAGCTCGCTCCACCGGCAGGGCATGGGGCCTAAACTGGTCCAT
GAGAAGTGGACTGGTCCGTGGAAGGTGGTAGAGGTAGTGATTGAGGGCCT
GAGCGTCGTCATCGAGATGGAAGGCAGGACGACGCGCTCCAGGACGGTCT
CCGCTCCTTCGCTGAAGCCATTTTACACGAGACCGTCTGATCTTCGGCAC
CCCATGGAGGATGAGTTCGCGCAGATGTTCCAGCTCTTGTTTGGCCGCAG
CCCGCGCACGTCCCTCGACATGTTAGTGCCTCAGATGGATGACACAGAGA
CCACGGGAGGCTTCGAAAACTTTATCGAAGAGCGCCGGCACAACCTACGG
GAGGCCAGGGAGGCACTCGAGAGGATACACGAGGGCAGGGAAAAGGCACG
GCGACGCCGCAACGCATTGATTCAGCGACCATCGGCGGGCACTCGAGTCG
TGACGGGCGACCTCGTCCTGGCGAGGGAGAGCGACAGCTCGCTCCACCGG
CAGGGCATGGGGCCTAAACTGGTCCATGAGAAGTGGACTGGTCCGTGGAA
GGTGGTAGAGGTAGTGATTGAGGGCCTGAGCGTCGTCATCGAGATGGAAG
GCAGGACGACGCGCTCCAGGACGGTCTCCGCTCCTTCGCTGAAGCCATTT
TACACGAGACCGTCTGATCTTCGGCACCCCATGGAGGATGAGTTCGCGCA
GATG
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