mRNA_M-pyrifera_M_contig10011.25.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig10011.25.1
Unique Name	mRNA_M-pyrifera_M_contig10011.25.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot
Match: UPI0006C9A33C (tankyrase-2-like n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI0006C9A33C)

HSP 1 Score: 60.5 bits (145), Expect = 1.600e-6
Identity = 71/274 (25.91%), Postives = 101/274 (36.86%), Query Frame = 1

Query:  139 VEWLSKFGARSNVRNRWNCTPLHSAVIDGKR-DVLEALLKADDRVSAPCSNCVNSSNDFGESPLHIAAAVGNIEVAQALLACGARPQSIDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACDFGG--LLSFAI-------IDALLAHGAPTACGESNGCTPLHVAILSSIQHKVTCGEAESQAKPQAISDVPGISDVSSRKESAPLCASVNTSGEEVVEFLLNHGAPVDARNHQGKSPLRLACEKGHLGIARILLRAGAPP 930
            VEWL + GAR N+ N  N TPLH+    G+  D  + LL+  D V+ P    +N+ + FG++PL++A   G  E+   LL  GA P   +                                          A D  G   L +A+        + LL +GA  +  +  G TPLH+                       I D P +         A     + T   ++VE        VDAR+  G++PL  A   GH  I   LL  GA P
Sbjct:  204 VEWLLRSGARPNLANEDNLTPLHAICRHGQYVDTAKRLLEISDEVNRPVE--INARDKFGQTPLYLAGKNGFEEMFALLLRRGANPNLANE-----LGQTPLHVIAEARETPDMMELLFQIRSEKRQPVRIDAQDESGKTALHYALELRRERSAEFLLKNGANPSLADKYGLTPLHI-----------------------ICDKPAL---------AEKFFQIMTDQNQMVE--------VDARDSWGETPLHYALRSGHKKIIESLLMRGADP 430

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BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot
Match: UPI00143DB587 (ankyrin-3-like n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143DB587)

HSP 1 Score: 57.8 bits (138), Expect = 1.300e-5
Identity = 24/53 (45.28%), Postives = 38/53 (71.70%), Query Frame = 1

Query:  766 CASVNTSGEEVVEFLLNHGAPVDARNHQGKSPLRLACEKGHLGIARILLRAGA 924
            C   +    ++VEFLL+HGA ++A+   G++PL ++C+KG+L I +ILLR GA
Sbjct:  374 CCMRHNYNSKIVEFLLDHGADIEAKTRNGRTPLDVSCQKGNLEITKILLRRGA 426

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BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot
Match: A0A0L0DV53_THETB (GTPase activating protein Rap1-GAP n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DV53_THETB)

HSP 1 Score: 56.2 bits (134), Expect = 5.000e-5
Identity = 47/129 (36.43%), Postives = 69/129 (53.49%), Query Frame = 1

Query:   13 LLHAVQCQDSNAVMMLLSRGACVSKKYSNDNSLLHIASDA---DSVEWLSKFGARSNVRNRWNCTPLHSAVIDGKRDVLEALLKADDRVSAPCSNCVNSSNDFGESPLHIAAAVGNIEVAQALLACGAR 390
            LL AV   D + +  LLS    ++KK  +   L H+A ++   D +E + + GA ++  N    TPLH A      D +  LL A     AP  + V++ +D G SPL +AAA G++ VA ALLA GA+
Sbjct:    6 LLAAVSSGDVSVINDLLSTKPRLAKKAYSGKYLAHLAVESGHDDVLEAVLEGGAAADATNTAGATPLHVAAGLPSVDFVVLLLAA-----AP--DTVHAVDDNGWSPLFMAAAAGDVAVADALLAAGAK 127

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BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot
Match: A0A7I4XWK6_HAECO (Uncharacterized protein n=1 Tax=Haemonchus contortus TaxID=6289 RepID=A0A7I4XWK6_HAECO)

HSP 1 Score: 55.8 bits (133), Expect = 6.120e-5
Identity = 36/118 (30.51%), Postives = 60/118 (50.85%), Query Frame = 1

Query:  577 LLAHGAPTACGESNGCTPLHVAILSSIQHKVTCGEAESQAKPQAISD-VPGISDVSSRKESAPLCASVNTSGEEVVEFLLNHGAPVDARNHQGKSPLRLACEKGHLGIARILLRAGAP 927
            LL HGA T   ++ G +PL VA+      ++ C E  +     A++  + G+S          L  +V     E+V+FLL + A +DA N +G++PL +A  + +  +  +LL  GAP
Sbjct:  396 LLEHGADTVKADNEGKSPLSVALFDRKDPEL-CKEVVNYGGVSAVNHCIDGVS---------LLHIAVKNEDAEIVQFLLENNAAIDAENREGETPLEVAVRQNNRNLVTLLLDRGAP 503

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BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot
Match: A0A317SUG2_9PEZI (Uncharacterized protein n=1 Tax=Tuber magnatum TaxID=42249 RepID=A0A317SUG2_9PEZI)

HSP 1 Score: 55.1 bits (131), Expect = 9.880e-5
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = 1

Query:   16 LHAVQCQD-SNAVMMLLSRGACVSKKYSNDNSLLHIASDADSVEW--LSKFGARS--NVRNRWNCTPLHSAVIDGKRDVLEALL-KADDRVSAPCSNCVNSSNDFGESPLHIAAAVGNIEVAQALLACGARPQSIDNR 411
            LH   C      V  +L  G   + + +ND SLLH+A+   S  +  L   G+ S    + ++  TPLH A I G   +L AL+ K      +  S  +N +NDFG++PLH+A    + ++ + L   GA P +I+N+
Sbjct:  531 LHVAVCLGLMPLVEKVLLDGNLETNQTNNDRSLLHLAARFPSQAYKVLIDLGSPSLLTAQGQYANTPLHEAAISGNWKMLRALVEKFAKSTDSAHSGQINKTNDFGDTPLHLAVQFDHPDIVEFLAKNGADP-TIENK 667

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig10011.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
UPI0006C9A33C	1.600e-6	25.91	tankyrase-2-like n=1 Tax=Trichogramma pretiosum Ta...	[more]
UPI00143DB587	1.300e-5	45.28	ankyrin-3-like n=1 Tax=Belonocnema kinseyi TaxID=2...	[more]
A0A0L0DV53_THETB	5.000e-5	36.43	GTPase activating protein Rap1-GAP n=1 Tax=Thecamo...	[more]
A0A7I4XWK6_HAECO	6.120e-5	30.51	Uncharacterized protein n=1 Tax=Haemonchus contort...	[more]
A0A317SUG2_9PEZI	9.880e-5	31.88	Uncharacterized protein n=1 Tax=Tuber magnatum Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig10011	contig	M-pyrifera_M_contig10011:17..1339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Mammalia
Seed ortholog score	69.7
Seed ortholog evalue	2.7e-09
Seed eggNOG ortholog	42254.XP_004602631.1
Preferred name	TRPA1
KEGG ko	ko:K04984
KEGG TC	1.A.4.6.1,1.A.4.6.2,1.A.4.6.3,1.A.4.6.5
KEGG Pathway	ko04750,map04750
Hectar predicted targeting category	other localisation
GOs	GO:0000302,GO:0002791,GO:0002793,GO:0003008,GO:0003012,GO:0003674,GO:0004888,GO:0005034,GO:0005215,GO:0005216,GO:0005217,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006936,GO:0006939,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007204,GO:0007600,GO:0007606,GO:0008150,GO:0008324,GO:0009266,GO:0009408,GO:0009409,GO:0009410,GO:0009581,GO:0009582,GO:0009593,GO:0009605,GO:0009612,GO:0009628,GO:0009636,GO:0009719,GO:0009987,GO:0010033,GO:0010035,GO:0010037,GO:0010243,GO:0010646,GO:0010647,GO:0010817,GO:0014070,GO:0014074,GO:0014832,GO:0014848,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015278,GO:0015318,GO:0016020,GO:0016021,GO:0016043,GO:0016324,GO:0019233,GO:0019722,GO:0019725,GO:0019932,GO:0022607,GO:0022803,GO:0022832,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030424,GO:0031000,GO:0031224,GO:0031226,GO:0031644,GO:0031646,GO:0032024,GO:0032421,GO:0032501,GO:0032879,GO:0032880,GO:0033554,GO:0033555,GO:0034220,GO:0034605,GO:0035556,GO:0035690,GO:0035774,GO:0036270,GO:0038023,GO:0042221,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042802,GO:0042995,GO:0043005,GO:0043269,GO:0043270,GO:0043279,GO:0043933,GO:0044057,GO:0044070,GO:0044085,GO:0044425,GO:0044459,GO:0044464,GO:0045177,GO:0046677,GO:0046873,GO:0046883,GO:0046887,GO:0048265,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050877,GO:0050896,GO:0050906,GO:0050907,GO:0050951,GO:0050954,GO:0050955,GO:0050966,GO:0050968,GO:0050974,GO:0050982,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051209,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051259,GO:0051260,GO:0051262,GO:0051282,GO:0051283,GO:0051289,GO:0051480,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051930,GO:0051931,GO:0051969,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0060089,GO:0060341,GO:0060401,GO:0060402,GO:0061178,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070417,GO:0070588,GO:0070838,GO:0070887,GO:0071241,GO:0071244,GO:0071310,GO:0071312,GO:0071313,GO:0071407,GO:0071415,GO:0071417,GO:0071466,GO:0071495,GO:0071840,GO:0071944,GO:0072347,GO:0072503,GO:0072507,GO:0072511,GO:0090087,GO:0090276,GO:0090277,GO:0097458,GO:0097553,GO:0097603,GO:0097604,GO:0098590,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098862,GO:0098900,GO:0098908,GO:0099094,GO:0099604,GO:0120025,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903522,GO:1903530,GO:1903532,GO:1903793,GO:1904058,GO:1904951,GO:1990760
EggNOG free text desc.	osmolarity-sensing cation channel activity
EggNOG OGs	38G7Q@33154,3BCDU@33208,3D0P6@33213,3J72R@40674,4896E@7711,491BV@7742,COG0666@1,KOG0510@2759
COG Functional cat.	S
Best tax level	Mammalia
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko04040
Exons	2
Model size	942
Cds size	942
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815495.7466178-CDS-M-pyrifera_M_contig10011:16..283	1622815495.7466178-CDS-M-pyrifera_M_contig10011:16..283	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig10011 17..283 +
1692277437.943199-CDS-M-pyrifera_M_contig10011:16..283	1692277437.943199-CDS-M-pyrifera_M_contig10011:16..283	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig10011 17..283 +
1622815495.756826-CDS-M-pyrifera_M_contig10011:664..1339	1622815495.756826-CDS-M-pyrifera_M_contig10011:664..1339	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig10011 665..1339 +
1692277437.9548426-CDS-M-pyrifera_M_contig10011:664..1339	1692277437.9548426-CDS-M-pyrifera_M_contig10011:664..1339	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig10011 665..1339 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig10011.25.1	prot_M-pyrifera_M_contig10011.25.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig10011 17..1339 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig10011:17..1339+
coding sequence from alignment at M-pyrifera_M_contig10011:17..1339+

protein sequence of mRNA_M-pyrifera_M_contig10011.25.1

>prot_M-pyrifera_M_contig10011.25.1 ID=prot_M-pyrifera_M_contig10011.25.1|Name=mRNA_M-pyrifera_M_contig10011.25.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=314bp
MPSPLLHAVQCQDSNAVMMLLSRGACVSKKYSNDNSLLHIASDADSVEWL
SKFGARSNVRNRWNCTPLHSAVIDGKRDVLEALLKADDRVSAPCSNCVNS
SNDFGESPLHIAAAVGNIEVAQALLACGARPQSIDNRGATPLHIAVLYAH
HDIVMALLAGGANVGRANDEEKTALHIACDFGGLLSFAIIDALLAHGAPT
ACGESNGCTPLHVAILSSIQHKVTCGEAESQAKPQAISDVPGISDVSSRK
ESAPLCASVNTSGEEVVEFLLNHGAPVDARNHQGKSPLRLACEKGHLGIA
RILLRAGAPPGVGG

mRNA from alignment at M-pyrifera_M_contig10011:17..1339+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig10011.25.1 ID=mRNA_M-pyrifera_M_contig10011.25.1|Name=mRNA_M-pyrifera_M_contig10011.25.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at M-pyrifera_M_contig10011:17..1339+ (Macrocystis pyrifera P11B4 male)
ATGCCAAGCCCGCTTCTTCATGCGGTACAATGCCAGGACTCGAACGCGGT
TATGATGCTGCTTAGCCGCGGAGCGTGTGTGTCGAAGAAGTACTCTAACG
ATAACAGTCTTTTGCACATCGCGTCTGATGCCGACTCCGTGGAATGGCTG
TCGAAATTCGGCGCCCGAAGCAATGTTCGCAACAGGTGGAACTGCACGCC
CCTTCACTCTGCCGTCATTGACGGGAAAAGGGACGTCCTAGAGGCTCTGC
TGAAGGCAGATGATCGCGTCGATATCGATGCTAAGACTGACGAGGGGATG
ACCGCTCTTCATCATGCAGTTCAGCTAGGGGATATTTGTGCCATCAAGAC
GCTCCTGAAAAGTGGAGCAGATTCCCGCGCACGCAACAAACGTAGGGCAA
CGGCTCTGCACATGGCGGTTGTACTAGACCTTCTTGATGCAGTAAAGGTG
CTCCTCTGGCATGGCGTGCATGTCACACGTGCAGTAGGCAAGAGCGATCC
CACTCCATTGAAACAGGCGTCGTGCGGGAAATCGAATGCGAAGCCATTAC
CGTCGTCCGGTAAGCGACGCGCGAGAGCTTCGCGGAAGAGTAAGCACAAA
GGTGTGACGGAGCTTGAAGCCCTTCGTTCAGCTGAGCACGAAGCCAAGGT
ATCTGCACCTTGCAGCAACTGCGTGAACAGCAGCAACGATTTTGGCGAAA
GTCCTCTCCATATTGCTGCGGCAGTCGGCAACATTGAAGTGGCGCAGGCA
CTTCTTGCATGCGGAGCTAGGCCTCAATCTATCGACAATAGAGGCGCTAC
GCCATTACATATCGCTGTTTTATATGCTCATCACGACATCGTGATGGCTC
TTTTGGCGGGAGGGGCCAACGTCGGACGGGCCAACGACGAAGAAAAAACA
GCCCTCCACATCGCCTGCGATTTCGGCGGACTGCTATCCTTCGCAATAAT
CGACGCGTTGCTTGCGCATGGCGCCCCGACAGCTTGTGGGGAAAGCAACG
GCTGTACCCCTCTGCACGTGGCGATACTGTCCTCAATTCAACATAAAGTG
ACGTGTGGAGAAGCCGAATCGCAAGCAAAGCCTCAGGCCATCTCTGATGT
CCCCGGCATCTCTGATGTCAGCAGCAGGAAGGAATCCGCGCCACTTTGCG
CCTCTGTGAACACATCCGGTGAAGAGGTTGTCGAGTTTTTGCTTAACCAC
GGGGCTCCGGTGGACGCGAGAAACCACCAAGGGAAATCTCCACTCCGTTT
AGCTTGTGAGAAAGGGCACCTCGGTATTGCACGTATTCTGCTACGTGCCG
GAGCACCGCCTGGAGTCGGGGGG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig10011:17..1339+

>mRNA_M-pyrifera_M_contig10011.25.1 ID=mRNA_M-pyrifera_M_contig10011.25.1|Name=mRNA_M-pyrifera_M_contig10011.25.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1884bp|location=Sequence derived from alignment at M-pyrifera_M_contig10011:17..1339+ (Macrocystis pyrifera P11B4 male)
ATGCCAAGCCCGCTTCTTCATGCGGTACAATGCCAGGACTCGAACGCGGT
TATGATGCTGCTTAGCCGCGGAGCGTGTGTGTCGAAGAAGTACTCTAACG
ATAACAGTCTTTTGCACATCGCGTCTGATGCCGACTCCGTGGAATGGCTG
TCGAAATTCGGCGCCCGAAGCAATGTTCGCAACAGGTGGAACTGCACGCC
CCTTCACTCTGCCGTCATTGACGGGAAAAGGGACGTCCTAGAGGCTCTGC
TGAAGGCAGATGATCGCATGCCAAGCCCGCTTCTTCATGCGGTACAATGC
CAGGACTCGAACGCGGTTATGATGCTGCTTAGCCGCGGAGCGTGTGTGTC
GAAGAAGTACTCTAACGATAACAGTCTTTTGCACATCGCGTCTGATGCCG
ACTCCGTGGAATGGCTGTCGAAATTCGGCGCCCGAAGCAATGTTCGCAAC
AGGTGGAACTGCACGCCCCTTCACTCTGCCGTCATTGACGGGAAAAGGGA
CGTCCTAGAGGCTCTGCTGAAGGCAGATGATCGCGTATCTGCACCTTGCA
GCAACTGCGTGAACAGCAGCAACGATTTTGGCGAAAGTCCTCTCCATATT
GCTGCGGCAGTCGGCAACATTGAAGTGGCGCAGGCACTTCTTGCATGCGG
AGCTAGGCCTCAATCTATCGACAATAGAGGCGCTACGCCATTACATATCG
CTGTTTTATATGCTCATCACGACATCGTGATGGCTCTTTTGGCGGGAGGG
GCCAACGTCGGACGGGCCAACGACGAAGAAAAAACAGCCCTCCACATCGC
CTGCGATTTCGGCGGACTGCTATCCTTCGCAATAATCGACGCGTTGCTTG
CGCATGGCGCCCCGACAGCTTGTGGGGAAAGCAACGGCTGTACCCCTCTG
CACGTGGCGATACTGTCCTCAATTCAACATAAAGTGACGTGTGGAGAAGC
CGAATCGCAAGCAAAGCCTCAGGCCATCTCTGATGTCCCCGGCATCTCTG
ATGTCAGCAGCAGGAAGGAATCCGCGCCACTTTGCGCCTCTGTGAACACA
TCCGGTGAAGAGGTTGTCGAGTTTTTGCTTAACCACGGGGCTCCGGTGGA
CGCGAGAAACCACCAAGGGAAATCTCCACTCCGTTTAGCTTGTGAGAAAG
GGCACCTCGGTATTGCACGTATTCTGCTACGTGCCGGAGCACCGCCTGGA
GTCGGGGGGGTATCTGCACCTTGCAGCAACTGCGTGAACAGCAGCAACGA
TTTTGGCGAAAGTCCTCTCCATATTGCTGCGGCAGTCGGCAACATTGAAG
TGGCGCAGGCACTTCTTGCATGCGGAGCTAGGCCTCAATCTATCGACAAT
AGAGGCGCTACGCCATTACATATCGCTGTTTTATATGCTCATCACGACAT
CGTGATGGCTCTTTTGGCGGGAGGGGCCAACGTCGGACGGGCCAACGACG
AAGAAAAAACAGCCCTCCACATCGCCTGCGATTTCGGCGGACTGCTATCC
TTCGCAATAATCGACGCGTTGCTTGCGCATGGCGCCCCGACAGCTTGTGG
GGAAAGCAACGGCTGTACCCCTCTGCACGTGGCGATACTGTCCTCAATTC
AACATAAAGTGACGTGTGGAGAAGCCGAATCGCAAGCAAAGCCTCAGGCC
ATCTCTGATGTCCCCGGCATCTCTGATGTCAGCAGCAGGAAGGAATCCGC
GCCACTTTGCGCCTCTGTGAACACATCCGGTGAAGAGGTTGTCGAGTTTT
TGCTTAACCACGGGGCTCCGGTGGACGCGAGAAACCACCAAGGGAAATCT
CCACTCCGTTTAGCTTGTGAGAAAGGGCACCTCGGTATTGCACGTATTCT
GCTACGTGCCGGAGCACCGCCTGGAGTCGGGGGG