mRNA_M-pyrifera_M_contig101147.244.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101147.244.1
Unique NamemRNA_M-pyrifera_M_contig101147.244.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101147.244.1 vs. uniprot
Match: A0A0C2TGD0_AMAMK (Uncharacterized protein n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2TGD0_AMAMK)

HSP 1 Score: 69.7 bits (169), Expect = 2.110e-10
Identity = 55/201 (27.36%), Postives = 88/201 (43.78%), Query Frame = 1 
Query:   10 RNAESYLWLGRAWSELENDKKALQALQDAHEIQPDHLAILAHLCTTLINEGKMGKAEVALRRWI-------QVAGGEAVREEVQGLGALVEVLAGLEGGVGARHLEG-----------VIRHALRQPTKARLAFAAAIEAGEASQTPWVLRNRLGAALATDGKYPQALDAYLDAVRTRPGYVRAIVNCGFAFFNLAQYEHA 558
            +NA ++  LG    E E + +AL+ALQ A E+ P+HL     L  +  N+G    A  A+  W+       +        +    LG   E L      +   +  G           V+ ++  +  KA+  F  A+         W+L NR+GA +A  G+  +AL+ Y  A+   PGY+RA  N G +  NL ++E A
Sbjct:  435 KNAMAWYQLGVKQQENEREHRALEALQQAVELDPNHLPSWLALAISYSNDGNRTGAYDAISEWVHHNKKYKEPLAPPTNEDADASLGKRYEGLINCLISIARSNANGEIDADIQIALAVLLNSNEEYDKAQDCFRTALAL---RPEDWLLYNRVGATMANSGRAEEALEYYYKALELNPGYIRARYNLGISCINLRRFEEA 632
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BLAST of mRNA_M-pyrifera_M_contig101147.244.1 vs. uniprot
Match: UPI000771D254 (peroxisomal targeting signal 1 receptor n=1 Tax=Cephus cinctus TaxID=211228 RepID=UPI000771D254)

HSP 1 Score: 65.5 bits (158), Expect = 5.830e-9
Identity = 58/216 (26.85%), Postives = 93/216 (43.06%), Query Frame = 1 
Query:   10 RNAESYLWLGRAWSELENDKKALQALQDAHEIQPDHLAILAHLCTTLINEGKMGKAEVALRRWI--QVAGGEAVREEVQGL-----GALVEVLAGLEGGVGARHLE------------------GVIRHALRQPTKARLAFAAAIEAGEASQTPWVLRNRLGAALATDGKYPQALDAYLDAVRTRPGYVRAIVNCGFAFFNLAQYEHALGCYLLAA 582
            +NA ++L LG+  +E E D  A+ AL++   + P +   L  L  +  NE    +A + L+ W+         V+  +QG      G    +   +   V    +E                  GV+ +   +  KA   F  A++        W   NRLGA LA      +A+DAY +A++  PG++RA  N G +  NL  Y+ A G +LL A
Sbjct:  350 KNANAWLLLGKTQAENEQDPLAISALKECLTLDPSNSTALMALAVSYTNESYQNQACLTLKEWLLKNEKYKHLVQNRIQGARYTESGVSTVLFHDIHNEVRELFIEAARMNPHETIDPDVQCGLGVLFNLSSEYDKAADCFRTALQVIPDDSRLW---NRLGATLANGQSSEEAVDAYHEALKLSPGFIRARYNLGISCINLGAYKEA-GEHLLTA 561
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BLAST of mRNA_M-pyrifera_M_contig101147.244.1 vs. uniprot
Match: A0A6J0B689_NEOLC (Peroxisomal targeting signal 1 receptor n=9 Tax=Diprioninae TaxID=410274 RepID=A0A6J0B689_NEOLC)

HSP 1 Score: 65.5 bits (158), Expect = 5.840e-9
Identity = 60/229 (26.20%), Postives = 96/229 (41.92%), Query Frame = 1 
Query:   13 NAESYLWLGRAWSELENDKKALQALQDAHEIQPDHLAILAHLCTTLINEGKMGKAEVALRRW------------------------IQVAGGEAVREEVQGL-------GALVEVLAGLEGGVGARHLEGVIRHALRQPTKARLAFAAAIEAGEASQTPWVLRNRLGAALATDGKYPQALDAYLDAVRTRPGYVRAIVNCGFAFFNLAQYEHALGCYLLAARRNPQARD 606
            N+E++L LG+  +E E D  A+ AL+    + P +   +  L  +  NE    +A + L+ W                        +     E   EEV+ L           E+ A ++ G+G      V+ +   +  KA   F AA+         W   NRLGA LA   +  +A++AY +A+R  PG++RA  N G +  NL+ Y+ A    L A  +    RD
Sbjct:  356 NSEAWLLLGKTQAENEQDPLAISALKHCLSLDPTNSVAMMTLAVSYTNESYQNQACITLKEWLMKNEKYKNLTFLNKGSVTNQRSKVSTILSEDSHEEVKQLFIEAARMNPTNEIDADVQCGLG------VLFNISNEFDKAVDCFKAALHVKPDDSRLW---NRLGATLANGQRSEEAIEAYHNALRISPGFIRARYNLGISCINLSAYKEAGEHLLTALNQQALGRD 575
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101147.244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0C2TGD0_AMAMK2.110e-1027.36Uncharacterized protein n=1 Tax=Amanita muscaria (... [more]
UPI000771D2545.830e-926.85peroxisomal targeting signal 1 receptor n=1 Tax=Ce... [more]
A0A6J0B689_NEOLC5.840e-926.20Peroxisomal targeting signal 1 receptor n=9 Tax=Di... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101147contigM-pyrifera_M_contig101147:41..649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score80.5
Seed ortholog evalue1e-12
Seed eggNOG ortholog5217.XP_007002123.1
KEGG koko:K13342
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeats
EggNOG OGs38C1T@33154,3NVEX@4751,3UY4W@5204,3VEB3@5234,KOG1125@1,KOG1125@2759
COG Functional cat.S
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.0786183-CDS-M-pyrifera_M_contig101147:40..6491622815509.0786183-CDS-M-pyrifera_M_contig101147:40..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101147 41..649 +
1692277443.4947085-CDS-M-pyrifera_M_contig101147:40..6491692277443.4947085-CDS-M-pyrifera_M_contig101147:40..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101147 41..649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101147.244.1prot_M-pyrifera_M_contig101147.244.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101147 41..649 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101147.244.1

>prot_M-pyrifera_M_contig101147.244.1 ID=prot_M-pyrifera_M_contig101147.244.1|Name=mRNA_M-pyrifera_M_contig101147.244.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
EGERNAESYLWLGRAWSELENDKKALQALQDAHEIQPDHLAILAHLCTTL
INEGKMGKAEVALRRWIQVAGGEAVREEVQGLGALVEVLAGLEGGVGARH
LEGVIRHALRQPTKARLAFAAAIEAGEASQTPWVLRNRLGAALATDGKYP
QALDAYLDAVRTRPGYVRAIVNCGFAFFNLAQYEHALGCYLLAARRNPQA
RDL
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mRNA from alignment at M-pyrifera_M_contig101147:41..649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101147.244.1 ID=mRNA_M-pyrifera_M_contig101147.244.1|Name=mRNA_M-pyrifera_M_contig101147.244.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=609bp|location=Sequence derived from alignment at M-pyrifera_M_contig101147:41..649+ (Macrocystis pyrifera P11B4 male)
GAAGGAGAGCGGAACGCTGAGAGCTACCTGTGGCTGGGCCGAGCTTGGAG
TGAGTTGGAGAACGACAAGAAGGCGCTGCAGGCGCTGCAAGACGCGCACG
AAATCCAACCGGACCACCTGGCCATTCTGGCGCACTTGTGCACGACGCTG
ATCAACGAAGGGAAGATGGGCAAGGCGGAGGTGGCACTGCGGCGATGGAT
CCAAGTGGCGGGAGGTGAGGCGGTGCGGGAGGAAGTGCAGGGGTTGGGGG
CGTTGGTGGAGGTGTTGGCAGGGTTGGAGGGAGGGGTGGGCGCTCGCCAC
TTGGAAGGGGTGATTCGACACGCACTGCGACAGCCCACCAAAGCAAGACT
CGCATTCGCAGCGGCCATCGAGGCTGGCGAAGCATCGCAGACCCCCTGGG
TGCTGCGGAACCGCCTCGGTGCAGCCCTAGCCACTGACGGCAAGTACCCA
CAAGCGCTCGACGCCTACTTGGATGCGGTGCGCACGCGACCAGGGTATGT
GCGAGCGATCGTAAACTGCGGCTTCGCCTTCTTCAACCTCGCGCAGTACG
AGCACGCGCTCGGGTGCTACCTGCTCGCAGCACGACGCAATCCGCAAGCC
AGGGACCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101147:41..649+

>mRNA_M-pyrifera_M_contig101147.244.1 ID=mRNA_M-pyrifera_M_contig101147.244.1|Name=mRNA_M-pyrifera_M_contig101147.244.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig101147:41..649+ (Macrocystis pyrifera P11B4 male)
GAAGGAGAGCGGAACGCTGAGAGCTACCTGTGGCTGGGCCGAGCTTGGAG
TGAGTTGGAGAACGACAAGAAGGCGCTGCAGGCGCTGCAAGACGCGCACG
AAATCCAACCGGACCACCTGGCCATTCTGGCGCACTTGTGCACGACGCTG
ATCAACGAAGGGAAGATGGGCAAGGCGGAGGTGGCACTGCGGCGATGGAT
CCAAGTGGCGGGAGGTGAGGCGGTGCGGGAGGAAGTGCAGGGGTTGGGGG
CGTTGGTGGAGGTGTTGGCAGGGTTGGAGGGAGGGGTGGGCGCTCGCCAC
TTGGAAGGGGTGATTCGACACGCACTGCGACAGCCCACCAAAGCAAGACT
CGCATTCGCAGCGGCCATCGAGGCTGGCGAAGCATCGCAGACCCCCTGGG
TGCTGCGGAACCGCCTCGGTGCAGCCCTAGCCACTGACGGCAAGTACCCA
CAAGCGCTCGACGCCTACTTGGATGCGGTGCGCACGCGACCAGGGTATGT
GCGAGCGATCGTAAACTGCGGCTTCGCCTTCTTCAACCTCGCGCAGTACG
AGCACGCGCTCGGGTGCTACCTGCTCGCAGCACGACGCAATCCGCAAGCC
AGGGACCTGGAAGGAGAGCGGAACGCTGAGAGCTACCTGTGGCTGGGCCG
AGCTTGGAGTGAGTTGGAGAACGACAAGAAGGCGCTGCAGGCGCTGCAAG
ACGCGCACGAAATCCAACCGGACCACCTGGCCATTCTGGCGCACTTGTGC
ACGACGCTGATCAACGAAGGGAAGATGGGCAAGGCGGAGGTGGCACTGCG
GCGATGGATCCAAGTGGCGGGAGGTGAGGCGGTGCGGGAGGAAGTGCAGG
GGTTGGGGGCGTTGGTGGAGGTGTTGGCAGGGTTGGAGGGAGGGGTGGGC
GCTCGCCACTTGGAAGGGGTGATTCGACACGCACTGCGACAGCCCACCAA
AGCAAGACTCGCATTCGCAGCGGCCATCGAGGCTGGCGAAGCATCGCAGA
CCCCCTGGGTGCTGCGGAACCGCCTCGGTGCAGCCCTAGCCACTGACGGC
AAGTACCCACAAGCGCTCGACGCCTACTTGGATGCGGTGCGCACGCGACC
AGGGTATGTGCGAGCGATCGTAAACTGCGGCTTCGCCTTCTTCAACCTCG
CGCAGTACGAGCACGCGCTCGGGTGCTACCTGCTCGCAGCACGACGCAAT
CCGCAAGCCAGGGACCTG
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