mRNA_M-pyrifera_M_contig111636.2422.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111636.2422.1
Unique NamemRNA_M-pyrifera_M_contig111636.2422.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111636.2422.1 vs. uniprot
Match: A0A7S4I8V8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8V8_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 5.490e-8
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 1 
Query:   16 SRMKIYSTLVYDCQCTNLTYGEFQEMSGFQKLELLLSDTDAEDVVEQVHERCM-------ELLRGDFSAPSDSLPEDLLLPRYLVDICSYD-IAKCAAVIRASRPSSDNPKEMRLIRDPEILLST-------ALACIYGCELSTSNAWQAMNLIFQSLPERD 456
            S  KIY+ +VY C  T +T+  F +    + L  LLS++  + + + +++RC        E L+     P   + + +L+ RYL+ +   + +  C+ ++ A    +D PK    +  P+ L+         AL C+Y    +++N WQA+N I+QS+PERD
Sbjct:   68 SDFKIYTNIVYQCDPT-ITWEAFGKFGNSEILSKLLSNSTPKSIGKDLYQRCTAIIQKSNEQLKNVAVGPDTDITQWILV-RYLLQLGKKNHLLLCSRILYAV---ADPPKGHAPVGAPDSLIPNEILFIRCALRCVYSS--NSTNEWQAVNEIYQSIPERD 222
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BLAST of mRNA_M-pyrifera_M_contig111636.2422.1 vs. uniprot
Match: UPI0015B107A5 (neuroblastoma-amplified sequence-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015B107A5)

HSP 1 Score: 55.8 bits (133), Expect = 4.050e-6
Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 1 
Query:    1 VEEAHSRMKIYSTLVYDCQCT-NLTYGEFQEMSGFQKLELLLSDTDAEDVVEQVHERCMELL-RGDFSAPSDSLPEDLLLPRYLVDICSYDIAKCAAVIRASRPSSDNPKEMRLIRDPEILLSTALACIYGCELST--SNAWQAMNLIFQSLPERDLKN 465
            +E+    +     L+YDC    +L+  E+QE++ F+K++LL+S T  ED V+ V +     L R D   P  +     LL  YL+ +    +  C  ++   +  +       +I D   L+   L CIY CE S   +NA ++M+ +F SLP++  KN
Sbjct:  874 LEKLFDDLTTLEVLIYDCLINKDLSLKEYQELTEFEKVQLLMSTTSEEDFVKHVEQWLFPFLERCDKHDPGCAKS---LLKTYLMYLSKNSLIYCKKLLENYKFDTHT-----VISDVNELICLGLHCIYYCERSDQLTNA-KSMHELFLSLPDQVSKN 1023
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111636.2422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S4I8V8_9EUKA5.490e-828.40Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
UPI0015B107A54.050e-629.56neuroblastoma-amplified sequence-like n=1 Tax=Steg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111636contigM-pyrifera_M_contig111636:48..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.5
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog8049.ENSGMOP00000012070
Preferred nameNBAS
KEGG koko:K20473
Hectar predicted targeting categoryother localisation
GOsGO:0000149,GO:0000184,GO:0000956,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006810,GO:0006890,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0012505,GO:0016070,GO:0016071,GO:0016192,GO:0019219,GO:0019222,GO:0019439,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0034655,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048193,GO:0048518,GO:0048519,GO:0048523,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0060255,GO:0061013,GO:0065007,GO:0070939,GO:0071704,GO:0080090,GO:0090304,GO:0099023,GO:1901360,GO:1901361,GO:1901575,GO:1902369,GO:1902373,GO:1903311,GO:1903312,GO:2000622,GO:2000623
EggNOG free text desc.Neuroblastoma amplified sequence
EggNOG OGs38ERE@33154,3BCXC@33208,3CZ7R@33213,485G1@7711,48W87@7742,4A1K1@7898,KOG1797@1,KOG1797@2759
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size465
Cds size444
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.9304347-CDS-M-pyrifera_M_contig111636:47..4911622815628.9304347-CDS-M-pyrifera_M_contig111636:47..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111636 48..491 -
1692277495.1396198-CDS-M-pyrifera_M_contig111636:47..4911692277495.1396198-CDS-M-pyrifera_M_contig111636:47..491Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111636 48..491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.947103-UTR-M-pyrifera_M_contig111636:491..5121622815628.947103-UTR-M-pyrifera_M_contig111636:491..512Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111636 492..512 -
1692277495.1523674-UTR-M-pyrifera_M_contig111636:491..5121692277495.1523674-UTR-M-pyrifera_M_contig111636:491..512Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111636 492..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111636.2422.1prot_M-pyrifera_M_contig111636.2422.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111636 48..491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111636.2422.1

>prot_M-pyrifera_M_contig111636.2422.1 ID=prot_M-pyrifera_M_contig111636.2422.1|Name=mRNA_M-pyrifera_M_contig111636.2422.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
MKIYSTLVYDCQCTNLTYGEFQEMSGFQKLELLLSDTDAEDVVEQVHERC
MELLRGDFSAPSDSLPEDLLLPRYLVDICSYDIAKCAAVIRASRPSSDNP
KEMRLIRDPEILLSTALACIYGCELSTSNAWQAMNLIFQSLPERDLKN
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mRNA from alignment at M-pyrifera_M_contig111636:48..512-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111636.2422.1 ID=mRNA_M-pyrifera_M_contig111636.2422.1|Name=mRNA_M-pyrifera_M_contig111636.2422.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig111636:48..512- (Macrocystis pyrifera P11B4 male)
GTCGAGGAGGCGCACAGCCGCATGAAGATCTACTCCACCCTCGTGTACGA
CTGCCAGTGCACGAATCTCACCTATGGAGAGTTCCAGGAGATGTCTGGCT
TCCAGAAGCTGGAGCTTCTCCTCAGCGACACCGACGCGGAGGATGTGGTC
GAGCAGGTGCACGAGCGTTGCATGGAGCTGCTCAGGGGCGATTTCTCGGC
GCCTTCAGACTCTCTGCCCGAGGACCTCCTCCTGCCGCGCTACCTTGTCG
ATATTTGCAGCTATGACATCGCGAAGTGTGCGGCTGTGATCAGGGCGAGC
AGACCCAGCTCCGACAACCCCAAGGAGATGCGCCTCATCAGAGATCCGGA
GATTTTGCTCTCCACTGCCTTGGCCTGTATCTACGGCTGCGAACTCAGCA
CCAGCAATGCCTGGCAGGCGATGAACCTCATTTTCCAGTCGCTCCCTGAG
AGAGACCTGAAGAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111636:48..512-

>mRNA_M-pyrifera_M_contig111636.2422.1 ID=mRNA_M-pyrifera_M_contig111636.2422.1|Name=mRNA_M-pyrifera_M_contig111636.2422.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig111636:48..512- (Macrocystis pyrifera P11B4 male)
ATGAAGATCTACTCCACCCTCGTGTACGACTGCCAGTGCACGAATCTCAC
CTATGGAGAGTTCCAGGAGATGTCTGGCTTCCAGAAGCTGGAGCTTCTCC
TCAGCGACACCGACGCGGAGGATGTGGTCGAGCAGGTGCACGAGCGTTGC
ATGGAGCTGCTCAGGGGCGATTTCTCGGCGCCTTCAGACTCTCTGCCCGA
GGACCTCCTCCTGCCGCGCTACCTTGTCGATATTTGCAGCTATGACATCG
CGAAGTGTGCGGCTGTGATCAGGGCGAGCAGACCCAGCTCCGACAACCCC
AAGGAGATGCGCCTCATCAGAGATCCGGAGATTTTGCTCTCCACTGCCTT
GGCCTGTATCTACGGCTGCGAACTCAGCACCAGCAATGCCTGGCAGGCGA
TGAACCTCATTTTCCAGTCGCTCCCTGAGAGAGACCTGAAGAATATGAAG
ATCTACTCCACCCTCGTGTACGACTGCCAGTGCACGAATCTCACCTATGG
AGAGTTCCAGGAGATGTCTGGCTTCCAGAAGCTGGAGCTTCTCCTCAGCG
ACACCGACGCGGAGGATGTGGTCGAGCAGGTGCACGAGCGTTGCATGGAG
CTGCTCAGGGGCGATTTCTCGGCGCCTTCAGACTCTCTGCCCGAGGACCT
CCTCCTGCCGCGCTACCTTGTCGATATTTGCAGCTATGACATCGCGAAGT
GTGCGGCTGTGATCAGGGCGAGCAGACCCAGCTCCGACAACCCCAAGGAG
ATGCGCCTCATCAGAGATCCGGAGATTTTGCTCTCCACTGCCTTGGCCTG
TATCTACGGCTGCGAACTCAGCACCAGCAATGCCTGGCAGGCGATGAACC
TCATTTTCCAGTCGCTCCCTGAGAGAGACCTGAAGAAT
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