mRNA_M-pyrifera_M_contig111630.2419.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111630.2419.1
Unique NamemRNA_M-pyrifera_M_contig111630.2419.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: UPI000A2A493B (uncharacterized hydrolase YOR131C n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A493B)

HSP 1 Score: 66.2 bits (160), Expect = 2.060e-11
Identity = 33/73 (45.21%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 VDHFLDRI----SVEGALRVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAVLI 207
            VD FL ++    S  G     +TRDF+P KP PAP+ HIC++  +DP + +MVGD+V D+TC   AG+  VL+
Sbjct:  140 VDIFLKKLGDPSSYGGPFSHLLTRDFIPSKPDPAPIRHICKEWNLDPRNVIMVGDHVHDITCGLDAGSVTVLV 212          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A4P9XS50_9FUNG (Haloacid dehalogenase-like hydrolase n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XS50_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 4.730e-11
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    1 VDHFLDRISVEGALRVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAVLI 207
            V HFL            VTRDFLP KP P PLLHI     + P   +MVGD++DDL CA+AAGA +VL+
Sbjct:  127 VQHFLALREPHHRFDPLVTRDFLPPKPAPDPLLHIARTWGIAPEELLMVGDHLDDLACARAAGAASVLL 195          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A5A8CQT4_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CQT4_CAFRO)

HSP 1 Score: 63.2 bits (152), Expect = 2.420e-10
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1
Query:   22 ISVEGALRVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAG 189
            + +E    V ++R F PCKPHPAPLLHI E++   P    MVGD +DD+ C  AAG
Sbjct:   95 VRIEHDFDVALSRSFEPCKPHPAPLLHILERVGASPKEAAMVGDSLDDMDCGNAAG 150          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A1Y2H8V7_9FUNG (HAD-like domain-containing protein (Fragment) n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2H8V7_9FUNG)

HSP 1 Score: 62.0 bits (149), Expect = 2.430e-10
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = 1
Query:    1 VDHFLDRISVEGALRVTVTRDFL-PCKPHPAPLLHICEQL-TVDPAHTVMVGDYVDDLTCAKAAGA 192
            V H L   +       T++RD + P KPHP PLLHI   +  VDPAH +MVGD VDD+ CAKAAGA
Sbjct:   97 VTHLLTHHANGYTFHPTISRDCVQPTKPHPDPLLHIARNVWQVDPAHVLMVGDGVDDVACAKAAGA 162          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A2B4SPX9_STYPI (Haloacid dehalogenase-like hydrolase domain-containing protein n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SPX9_STYPI)

HSP 1 Score: 62.4 bits (150), Expect = 5.870e-10
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   34 GALRVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAVLI 207
            G L  ++TR+F P KP PAPLLHIC    V P + VMVGD++ D+ C K+AG+  +L+
Sbjct:  154 GPLTHSLTREFTPPKPDPAPLLHICRDWGVHPKNVVMVGDHLHDIQCGKSAGSVTILL 211          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A4P9Z1F1_9FUNG (HAD-like domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z1F1_9FUNG)

HSP 1 Score: 59.7 bits (143), Expect = 2.980e-9
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 VDHFLDRISVEGALRVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAVLI 207
            V HFL          + VTR+F P KP P PLLHI +   + P   +MVGD++DDL CA+ AGA  VL+
Sbjct:   85 VAHFLSLREPAHQFDILVTREFQPPKPAPDPLLHIAKAWNIRPDELMMVGDHLDDLYCARDAGAVGVLL 153          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A4P9Y2Y1_9FUNG (HAD-like domain-containing protein n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y2Y1_9FUNG)

HSP 1 Score: 58.2 bits (139), Expect = 1.600e-8
Identity = 29/52 (55.77%), Postives = 34/52 (65.38%), Query Frame = 1
Query:   52 VTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAVLI 207
            VTR FLP KPHP PL HI       P   +MVGD+ DDL+CAK AG+  VL+
Sbjct:  133 VTRAFLPTKPHPDPLFHIARTWGFAPEELMMVGDFGDDLSCAKGAGSVGVLL 184          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: UPI000955CE02 (HAD family hydrolase n=1 Tax=Pseudomonas alcaligenes TaxID=43263 RepID=UPI000955CE02)

HSP 1 Score: 57.4 bits (137), Expect = 2.580e-8
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   43 RVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAVLI 207
            R  + RD  P KPHP  LLH+  +  V P+  VMVGDY  DL CA+AAGAQ VL+
Sbjct:  122 RDVIGRDEAPPKPHPGGLLHLAARWQVQPSALVMVGDYRFDLDCARAAGAQGVLV 176          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: UPI0016663952 (phosphoglycolate phosphatase n=1 Tax=Oceanisphaera marina TaxID=2017550 RepID=UPI0016663952)

HSP 1 Score: 57.8 bits (138), Expect = 2.610e-8
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:   76 KPHPAPLLHICEQLTVDPAHTVMVGDYVDDLTCAKAAGAQAV 201
            KPHPAPLLH+CE L + P H++MVGD  +D+  AKAAG  AV
Sbjct:  153 KPHPAPLLHVCETLNISPEHSIMVGDSENDVLSAKAAGMAAV 194          
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Match: A0A0K9RYN1_SPIOL (Uncharacterized protein n=7 Tax=Chenopodioideae TaxID=1307796 RepID=A0A0K9RYN1_SPIOL)

HSP 1 Score: 57.8 bits (138), Expect = 2.690e-8
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1
Query:   52 VTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVGDYV-DDLTCAKAAGAQAVLI 207
            ++R+FLPCKP PAPLLHIC      P   +M+GD + DD+ C K AGA   L+
Sbjct:  148 LSREFLPCKPDPAPLLHICSNWEFQPNEVIMIGDSLKDDVACGKRAGAYTCLL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111630.2419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A493B2.060e-1145.21uncharacterized hydrolase YOR131C n=1 Tax=Exaiptas... [more]
A0A4P9XS50_9FUNG4.730e-1150.72Haloacid dehalogenase-like hydrolase n=1 Tax=Thamn... [more]
A0A5A8CQT4_CAFRO2.420e-1050.00Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A1Y2H8V7_9FUNG2.430e-1053.03HAD-like domain-containing protein (Fragment) n=1 ... [more]
A0A2B4SPX9_STYPI5.870e-1050.00Haloacid dehalogenase-like hydrolase domain-contai... [more]
A0A4P9Z1F1_9FUNG2.980e-946.38HAD-like domain-containing protein n=1 Tax=Synceph... [more]
A0A4P9Y2Y1_9FUNG1.600e-855.77HAD-like domain-containing protein n=1 Tax=Piptoce... [more]
UPI000955CE022.580e-854.55HAD family hydrolase n=1 Tax=Pseudomonas alcaligen... [more]
UPI00166639522.610e-861.90phosphoglycolate phosphatase n=1 Tax=Oceanisphaera... [more]
A0A0K9RYN1_SPIOL2.690e-850.94Uncharacterized protein n=7 Tax=Chenopodioideae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111630contigM-pyrifera_M_contig111630:5..211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score67.8
Seed ortholog evalue2.3e-09
Seed eggNOG ortholog4952.CAG81300
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Saccharomyces cerevisiae YOR131C
EggNOG OGs2QR7R@2759,3A0JM@33154,3P1ZB@4751,3QSZB@4890,3RUA5@4891,COG0546@1
COG Functional cat.S
Best tax levelSaccharomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.8054693-CDS-M-pyrifera_M_contig111630:4..2111622815628.8054693-CDS-M-pyrifera_M_contig111630:4..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111630 5..211 +
1692277495.102068-CDS-M-pyrifera_M_contig111630:4..2111692277495.102068-CDS-M-pyrifera_M_contig111630:4..211Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111630 5..211 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111630.2419.1prot_M-pyrifera_M_contig111630.2419.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111630 5..211 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111630.2419.1

>prot_M-pyrifera_M_contig111630.2419.1 ID=prot_M-pyrifera_M_contig111630.2419.1|Name=mRNA_M-pyrifera_M_contig111630.2419.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=69bp
VDHFLDRISVEGALRVTVTRDFLPCKPHPAPLLHICEQLTVDPAHTVMVG
DYVDDLTCAKAAGAQAVLI
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mRNA from alignment at M-pyrifera_M_contig111630:5..211+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111630.2419.1 ID=mRNA_M-pyrifera_M_contig111630.2419.1|Name=mRNA_M-pyrifera_M_contig111630.2419.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=207bp|location=Sequence derived from alignment at M-pyrifera_M_contig111630:5..211+ (Macrocystis pyrifera P11B4 male)
GTGGATCACTTCCTGGACAGGATATCCGTCGAAGGAGCGCTTCGTGTTAC TGTCACACGCGACTTTCTGCCCTGCAAGCCACATCCAGCGCCGTTGCTGC ACATCTGCGAGCAGCTGACTGTCGATCCAGCACACACTGTCATGGTTGGC GACTACGTTGACGATCTTACCTGCGCCAAGGCTGCAGGCGCGCAGGCAGT CCTAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111630:5..211+

>mRNA_M-pyrifera_M_contig111630.2419.1 ID=mRNA_M-pyrifera_M_contig111630.2419.1|Name=mRNA_M-pyrifera_M_contig111630.2419.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig111630:5..211+ (Macrocystis pyrifera P11B4 male)
GTGGATCACTTCCTGGACAGGATATCCGTCGAAGGAGCGCTTCGTGTTAC
TGTCACACGCGACTTTCTGCCCTGCAAGCCACATCCAGCGCCGTTGCTGC
ACATCTGCGAGCAGCTGACTGTCGATCCAGCACACACTGTCATGGTTGGC
GACTACGTTGACGATCTTACCTGCGCCAAGGCTGCAGGCGCGCAGGCAGT
CCTAATCGTGGATCACTTCCTGGACAGGATATCCGTCGAAGGAGCGCTTC
GTGTTACTGTCACACGCGACTTTCTGCCCTGCAAGCCACATCCAGCGCCG
TTGCTGCACATCTGCGAGCAGCTGACTGTCGATCCAGCACACACTGTCAT
GGTTGGCGACTACGTTGACGATCTTACCTGCGCCAAGGCTGCAGGCGCGC
AGGCAGTCCTAATC
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