mRNA_M-pyrifera_M_contig11163.2418.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11163.2418.1
Unique NamemRNA_M-pyrifera_M_contig11163.2418.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: D7FY29_ECTSI (Adenosylmethionine decarboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY29_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 6.360e-20
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGLENILQ 159
            VTPE DFSYASFETNVRLPDYD +VRGVL VFRP+KFTMTLF E SG+E+I Q
Sbjct:  280 VTPEPDFSYASFETNVRLPDYDALVRGVLEVFRPRKFTMTLFGEDSGIEDIKQ 332
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: A0A2R5GFL0_9STRA (S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFL0_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.900e-11
Identity = 28/53 (52.83%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGLENILQ 159
            VTPE ++SYASFETN+ + DY D++   L  FRPK+F +T+FA+++ LE I Q
Sbjct:  292 VTPEPEYSYASFETNLEISDYTDLLTKTLRAFRPKRFAITMFADEAALEKIRQ 344
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: A0A812R309_9DINO (Adenosylmethionine decarboxylase n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812R309_9DINO)

HSP 1 Score: 65.1 bits (157), Expect = 7.060e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGLENI 153
            VTPES  SYASFETNV    Y  ++R VLGVF P ++++TLFA+K+GLE +
Sbjct:  245 VTPESHCSYASFETNVTTSTYTPLLRAVLGVFMPARYSVTLFADKAGLEGV 295
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: UPI00112A73CC (S-adenosylmethionine decarboxylase proenzyme isoform X1 n=4 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112A73CC)

HSP 1 Score: 62.4 bits (150), Expect = 5.700e-10
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKS 138
            +TPE DFSY SFETN+    YDD+V+ V+ VF+P+KF  TLF  KS
Sbjct:  244 ITPEPDFSYVSFETNISQTSYDDLVKKVVDVFKPRKFVTTLFVNKS 289
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: A0A1B6C136_9HEMI (Uncharacterized protein n=4 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6C136_9HEMI)

HSP 1 Score: 60.5 bits (145), Expect = 5.920e-10
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGL 144
            +TPE DFSY SFETN+    Y+++++ VL VFRP KF +T+FA K+ +
Sbjct:   71 ITPEPDFSYVSFETNIPKSSYEEVIKRVLDVFRPAKFVVTVFANKASV 118
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme n=11 Tax=Anura TaxID=8342 RepID=DCAM_XENLA)

HSP 1 Score: 61.6 bits (148), Expect = 1.090e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKS 138
            +TPE DFSY SFETNV L  YDD++  V+ VF+P+KF  TLF  +S
Sbjct:  246 ITPEPDFSYVSFETNVSLTTYDDLISKVVDVFKPRKFVTTLFVNQS 291
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: UPI000328A34A (S-adenosylmethionine decarboxylase proenzyme 2-like n=1 Tax=Dasypus novemcinctus TaxID=9361 RepID=UPI000328A34A)

HSP 1 Score: 60.5 bits (145), Expect = 1.270e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKS 138
            +TPE +FSY SFETN+ L  YDD++R V+ VFRP KF  TLF  +S
Sbjct:   96 ITPEPEFSYVSFETNLSLTSYDDLIRKVVEVFRPGKFMTTLFVNQS 141
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: UPI0006D4D1E0 (S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4D1E0)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-9
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGL 144
            +TPE +FSY SFETNV    Y D+++ VL +FRP+KF +TLFA K  +
Sbjct:  258 ITPEPEFSYVSFETNVPQASYRDVIQRVLNIFRPRKFVLTLFANKESV 305
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: R7VF94_CAPTE (S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Capitella teleta TaxID=283909 RepID=R7VF94_CAPTE)

HSP 1 Score: 60.5 bits (145), Expect = 2.880e-9
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGLEN 150
            +TPE +FSY SFETNV +  Y++++  VL +F+PKKF MTLFA      N
Sbjct:  253 ITPEPEFSYVSFETNVEMSTYEELILRVLDIFQPKKFLMTLFANPGSSAN 302
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BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Match: A0A8C5Q582_9ANUR (S-adenosylmethionine decarboxylase proenzyme n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5Q582_9ANUR)

HSP 1 Score: 60.5 bits (145), Expect = 2.900e-9
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKS 138
            +TPE +FSY SFETNV L  YDD++  V+ VF+P+KF  TLF  +S
Sbjct:  262 ITPEPEFSYVSFETNVSLTSYDDLISKVVDVFKPRKFVTTLFVNQS 307
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11163.2418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY29_ECTSI6.360e-2081.13Adenosylmethionine decarboxylase n=2 Tax=Ectocarpu... [more]
A0A2R5GFL0_9STRA6.900e-1152.83S-adenosylmethionine decarboxylase proenzyme n=1 T... [more]
A0A812R309_9DINO7.060e-1158.82Adenosylmethionine decarboxylase n=1 Tax=Symbiodin... [more]
UPI00112A73CC5.700e-1058.70S-adenosylmethionine decarboxylase proenzyme isofo... [more]
A0A1B6C136_9HEMI5.920e-1052.08Uncharacterized protein n=4 Tax=Clastoptera arizon... [more]
DCAM_XENLA1.090e-958.70S-adenosylmethionine decarboxylase proenzyme n=11 ... [more]
UPI000328A34A1.270e-958.70S-adenosylmethionine decarboxylase proenzyme 2-lik... [more]
UPI0006D4D1E01.530e-954.17S-adenosylmethionine decarboxylase proenzyme n=1 T... [more]
R7VF94_CAPTE2.880e-952.00S-adenosylmethionine decarboxylase proenzyme n=1 T... [more]
A0A8C5Q582_9ANUR2.900e-956.52S-adenosylmethionine decarboxylase proenzyme n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11163contigM-pyrifera_M_contig11163:345..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue6.2e-08
Seed eggNOG ortholog44056.XP_009034111.1
Preferred nameAMD1
KEGG rclassRC00299
KEGG koko:K01581,ko:K01611,ko:K15203
KEGG ReactionR00178,R00670
KEGG Pathwayko00270,ko00330,ko00480,ko01100,ko01110,ko01130,map00270,map00330,map00480,map01100,map01110,map01130
KEGG ModuleM00034,M00133,M00134
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001701,GO:0003674,GO:0003824,GO:0004014,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006575,GO:0006576,GO:0006595,GO:0006596,GO:0006597,GO:0006732,GO:0006766,GO:0006767,GO:0006790,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008215,GO:0008216,GO:0008295,GO:0009058,GO:0009108,GO:0009110,GO:0009308,GO:0009309,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010629,GO:0015939,GO:0015940,GO:0016032,GO:0016053,GO:0016458,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0019058,GO:0019079,GO:0019222,GO:0019752,GO:0019808,GO:0019810,GO:0032501,GO:0032502,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0042401,GO:0042742,GO:0043009,GO:0043167,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044106,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046500,GO:0048519,GO:0048731,GO:0048856,GO:0050789,GO:0050829,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0060255,GO:0065007,GO:0070405,GO:0071704,GO:0072330,GO:0097164,GO:0098542,GO:0099402,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.S-adenosylmethioninamine biosynthetic process
EggNOG OGsKOG0788@1,KOG0788@2759
Ec32 ortholog descriptionS-Adenosylmethionine decarboxylase
Ec32 orthologEc-27_006890.1
EC4.1.1.17,4.1.1.50
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021
Exons1
Model size174
Cds size174
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.7647123-CDS-M-pyrifera_M_contig11163:344..5181622815628.7647123-CDS-M-pyrifera_M_contig11163:344..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11163 345..518 +
1692277495.0875216-CDS-M-pyrifera_M_contig11163:344..5181692277495.0875216-CDS-M-pyrifera_M_contig11163:344..518Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11163 345..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11163.2418.1prot_M-pyrifera_M_contig11163.2418.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11163 345..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11163.2418.1

>prot_M-pyrifera_M_contig11163.2418.1 ID=prot_M-pyrifera_M_contig11163.2418.1|Name=mRNA_M-pyrifera_M_contig11163.2418.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
VTPESDFSYASFETNVRLPDYDDIVRGVLGVFRPKKFTMTLFAEKSGLEN
ILQVYRP*
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mRNA from alignment at M-pyrifera_M_contig11163:345..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11163.2418.1 ID=mRNA_M-pyrifera_M_contig11163.2418.1|Name=mRNA_M-pyrifera_M_contig11163.2418.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig11163:345..518+ (Macrocystis pyrifera P11B4 male)
GTGACACCAGAGTCCGATTTCAGCTACGCCTCATTCGAGACGAATGTGCG
CTTGCCGGACTACGATGACATCGTGCGGGGGGTGCTGGGAGTATTTCGAC
CGAAAAAGTTCACGATGACACTGTTCGCTGAAAAATCCGGGCTGGAGAAC
ATTTTGCAGGTGTACAGGCCTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11163:345..518+

>mRNA_M-pyrifera_M_contig11163.2418.1 ID=mRNA_M-pyrifera_M_contig11163.2418.1|Name=mRNA_M-pyrifera_M_contig11163.2418.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig11163:345..518+ (Macrocystis pyrifera P11B4 male)
GTGACACCAGAGTCCGATTTCAGCTACGCCTCATTCGAGACGAATGTGCG
CTTGCCGGACTACGATGACATCGTGCGGGGGGTGCTGGGAGTATTTCGAC
CGAAAAAGTTCACGATGACACTGTTCGCTGAAAAATCCGGGCTGGAGAAC
ATTTTGCAGGTGTACAGGCCTTGAGTGACACCAGAGTCCGATTTCAGCTA
CGCCTCATTCGAGACGAATGTGCGCTTGCCGGACTACGATGACATCGTGC
GGGGGGTGCTGGGAGTATTTCGACCGAAAAAGTTCACGATGACACTGTTC
GCTGAAAAATCCGGGCTGGAGAACATTTTGCAGGTGTACAGGCCTTGA
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