mRNA_M-pyrifera_M_contig111625.2416.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111625.2416.1
Unique NamemRNA_M-pyrifera_M_contig111625.2416.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111625.2416.1 vs. uniprot
Match: UPI001CCB9287 (hypothetical protein n=1 Tax=Nannocystis pusilla TaxID=889268 RepID=UPI001CCB9287)

HSP 1 Score: 55.8 bits (133), Expect = 8.830e-7
Identity = 35/93 (37.63%), Postives = 46/93 (49.46%), Query Frame = 1 
Query:    1 ELQGTRLVRDKRFPVRVTVQSYKTTDSGVIASNTFSEIALALCDHLASGVAFGSLPTS--TLSRTTAPRLGLGQHEVVARDKPDWWSQFWATF 273
            E+ G  +VRD+RFP+RVTVQ YK T  G++  +   +I   L   LA   A GSL  +  T   T     G G+     R  P WW  FW  +
Sbjct:  299 EIGGLPIVRDERFPIRVTVQFYKATSDGLLDEDVLVDIGAQLERVLADATAVGSLVDAGETGRVTEWDDGGAGK-----RQPPCWWGAFWRRY 386
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BLAST of mRNA_M-pyrifera_M_contig111625.2416.1 vs. uniprot
Match: A0A2E3EDQ9_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E3EDQ9_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 8.960e-7
Identity = 32/89 (35.96%), Postives = 45/89 (50.56%), Query Frame = 1 
Query:    1 ELQGTRLVRDKRFPVRVTVQSYKTTDSGVIASNTFSEIALALCDHLASGVAFGSLPTS-TLSRTTAPRLGLGQHEVVARDKPDWWSQFW 264
            E+ G ++ RD RFPVRVTVQ YK T +GV+++    +I+  +    A     GSL T  T  R T       +++       DWW  FW
Sbjct:  348 EIDGLKIERDDRFPVRVTVQFYKATSNGVVSAEDMRQISEQIERVYAKSDYVGSLVTGGTTGRVT-------EYDGTKVQPADWWESFW 429
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BLAST of mRNA_M-pyrifera_M_contig111625.2416.1 vs. uniprot
Match: L8HBW9_ACACA (CUE domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HBW9_ACACA)

HSP 1 Score: 52.8 bits (125), Expect = 1.090e-5
Identity = 38/115 (33.04%), Postives = 52/115 (45.22%), Query Frame = 1 
Query:    1 ELQGTRLVRDKRFPVRVTVQSYKTTDSGVIASNTFSEIALALCDHLASGVAFGSLPTSTLSRTTAPRLGLGQHEVVARDK-----PDWWSQFWATFNPLL-DIDESSALSILHGR 327
            E+ G  + RD +FPVRVT+Q YK+T +GV        IA  +          GSL      RT  P     +H V +        P WWS FW T+   L  ++E  A ++  GR
Sbjct:  348 EVAGIAIERDPQFPVRVTLQFYKSTANGVADEEAMRTIAAQIESSRKFADNIGSLVVG--GRTDRPT----EHSVPSPAALPIFVPAWWSTFWLTYGRTLPQLNEEQAKTLAFGR 456
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111625.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001CCB92878.830e-737.63hypothetical protein n=1 Tax=Nannocystis pusilla T... [more]
A0A2E3EDQ9_9BACT8.960e-735.96Uncharacterized protein n=1 Tax=Verrucomicrobiales... [more]
L8HBW9_ACACA1.090e-533.04CUE domain containing protein n=1 Tax=Acanthamoeba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111625contigM-pyrifera_M_contig111625:260..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.68964-CDS-M-pyrifera_M_contig111625:259..5861622815628.68964-CDS-M-pyrifera_M_contig111625:259..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111625 260..586 -
1692277495.060626-CDS-M-pyrifera_M_contig111625:259..5861692277495.060626-CDS-M-pyrifera_M_contig111625:259..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111625 260..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111625.2416.1prot_M-pyrifera_M_contig111625.2416.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111625 260..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111625.2416.1

>prot_M-pyrifera_M_contig111625.2416.1 ID=prot_M-pyrifera_M_contig111625.2416.1|Name=mRNA_M-pyrifera_M_contig111625.2416.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
ELQGTRLVRDKRFPVRVTVQSYKTTDSGVIASNTFSEIALALCDHLASGV
AFGSLPTSTLSRTTAPRLGLGQHEVVARDKPDWWSQFWATFNPLLDIDES
SALSILHGR
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mRNA from alignment at M-pyrifera_M_contig111625:260..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111625.2416.1 ID=mRNA_M-pyrifera_M_contig111625.2416.1|Name=mRNA_M-pyrifera_M_contig111625.2416.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=327bp|location=Sequence derived from alignment at M-pyrifera_M_contig111625:260..586- (Macrocystis pyrifera P11B4 male)
GAGCTACAAGGGACCCGCCTCGTGCGGGACAAGCGATTTCCTGTCAGGGT
CACAGTTCAGTCGTACAAAACGACAGACTCCGGGGTCATTGCCAGCAACA
CCTTCTCAGAGATTGCCTTGGCGTTGTGCGACCATCTGGCTTCCGGGGTT
GCTTTCGGAAGTTTGCCCACTAGCACCCTGTCGAGGACCACAGCTCCCCG
CCTTGGCTTGGGCCAGCATGAAGTCGTGGCACGTGACAAACCAGATTGGT
GGAGCCAGTTTTGGGCAACTTTCAACCCACTTCTCGACATTGACGAGTCG
AGTGCCCTTTCGATTCTGCATGGGCGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111625:260..586-

>mRNA_M-pyrifera_M_contig111625.2416.1 ID=mRNA_M-pyrifera_M_contig111625.2416.1|Name=mRNA_M-pyrifera_M_contig111625.2416.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig111625:260..586- (Macrocystis pyrifera P11B4 male)
GAGCTACAAGGGACCCGCCTCGTGCGGGACAAGCGATTTCCTGTCAGGGT
CACAGTTCAGTCGTACAAAACGACAGACTCCGGGGTCATTGCCAGCAACA
CCTTCTCAGAGATTGCCTTGGCGTTGTGCGACCATCTGGCTTCCGGGGTT
GCTTTCGGAAGTTTGCCCACTAGCACCCTGTCGAGGACCACAGCTCCCCG
CCTTGGCTTGGGCCAGCATGAAGTCGTGGCACGTGACAAACCAGATTGGT
GGAGCCAGTTTTGGGCAACTTTCAACCCACTTCTCGACATTGACGAGTCG
AGTGCCCTTTCGATTCTGCATGGGCGAGAGCTACAAGGGACCCGCCTCGT
GCGGGACAAGCGATTTCCTGTCAGGGTCACAGTTCAGTCGTACAAAACGA
CAGACTCCGGGGTCATTGCCAGCAACACCTTCTCAGAGATTGCCTTGGCG
TTGTGCGACCATCTGGCTTCCGGGGTTGCTTTCGGAAGTTTGCCCACTAG
CACCCTGTCGAGGACCACAGCTCCCCGCCTTGGCTTGGGCCAGCATGAAG
TCGTGGCACGTGACAAACCAGATTGGTGGAGCCAGTTTTGGGCAACTTTC
AACCCACTTCTCGACATTGACGAGTCGAGTGCCCTTTCGATTCTGCATGG
GCGA
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