mRNA_M-pyrifera_M_contig111614.2413.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111614.2413.1
Unique NamemRNA_M-pyrifera_M_contig111614.2413.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: A0A7S4HNK8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HNK8_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 9.680e-21
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:  289 ELAAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            EL AAL E+QKQEDAY ++ KELERKSEEGGVVS+N+AK ELAQHLAEDPLPLR+AKIT EAA K+A++
Sbjct:   84 ELEAALQELQKQEDAYESKKKELERKSEEGGVVSKNKAKAELAQHLAEDPLPLRKAKITQEAAVKKAER 152
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: A0A7S4JXR2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JXR2_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 5.160e-19
Identity = 56/76 (73.68%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:  274 KAAAAELAAALAEVQKQEDAYNARTKELERKSEEG--GVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            KAA AEL AALAEV+KQEDAYN +T  L  KSE+   GVV+RNR KNELAQHLAEDPLPLR+AKITAEAA ++A+K
Sbjct:   10 KAAQAELEAALAEVKKQEDAYNQKTATLTAKSEDESLGVVTRNRTKNELAQHLAEDPLPLRQAKITAEAAVRKAEK 85
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: L8GVG0_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVG0_ACACA)

HSP 1 Score: 90.1 bits (222), Expect = 1.150e-18
Identity = 54/74 (72.97%), Postives = 62/74 (83.78%), Query Frame = 1 
Query:  274 KAAAAELAAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            K A  EL AAL +V+ QEDA N +T EL++KSEEGG+VSRNRAK ELAQHLAEDPLPLR+AKIT EAA K+ADK
Sbjct:  156 KQAKRELDAALKDVKDQEDARNNKTAELQKKSEEGGLVSRNRAKAELAQHLAEDPLPLRKAKITLEAAVKKADK 229
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: A0A6U1WWW6_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1WWW6_9EUKA)

HSP 1 Score: 89.4 bits (220), Expect = 1.120e-17
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 1 
Query:  271 AKAAAAELAAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            A AA  EL  ALA +  +E AYN +  ELERKS EGGVVS N+AKNELAQHLAEDPLPLRRAKITAEAA KRA+K
Sbjct:  377 AXAAQKELEEALAALHAEEKAYNDKKAELERKSTEGGVVSMNKAKNELAQHLAEDPLPLRRAKITAEAAVKRAEK 451
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: A0A7S4JXC6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JXC6_9EUKA)

HSP 1 Score: 85.1 bits (209), Expect = 2.540e-17
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:  295 AAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            AAALAEVQ QE AYN +T+ L+++SEEGGVV+RN+AK  L  HLAEDPLPLR+AKIT EAA+KRADK
Sbjct:   97 AAALAEVQAQEKAYNEKTESLKKQSEEGGVVTRNKAKVSLDAHLAEDPLPLRKAKITLEAANKRADK 163
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: A0A7S4JXG1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JXG1_9EUKA)

HSP 1 Score: 83.2 bits (204), Expect = 3.360e-17
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:  298 AALAEVQKQEDAYNARTKELERKSEEG--GVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            AALAEV+KQEDAYN +T  L  KSE+   GVV+RNR KNELAQHLAEDPLPLR+AKITAEAA ++A+K
Sbjct:    1 AALAEVKKQEDAYNQKTASLTAKSEDESLGVVTRNRTKNELAQHLAEDPLPLRQAKITAEAAVRKAEK 68
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BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: L8H398_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H398_ACACA)

HSP 1 Score: 85.5 bits (210), Expect = 7.260e-17
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:  274 KAAAAELAAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            KAA  E+ AALA+V  QE A ++RT EL+RKS EGG+V +N+AK ELAQHLAEDPLPLR+AKIT EAA KRA+K
Sbjct:  165 KAAQEEVDAALADVNAQESARDSRTAELQRKSTEGGIVQQNKAKAELAQHLAEDPLPLRKAKITLEAALKRAEK 238
[Close]
BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: L8H5F3_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H5F3_ACACA)

HSP 1 Score: 85.5 bits (210), Expect = 1.050e-16
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:  274 KAAAAELAAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            KAA  E+ AALA+V  QE A ++RT EL+RKS EGG+V +N+AK ELAQHLAEDPLPLR+AKIT EAA KRA+K
Sbjct:  178 KAAQEEVDAALADVNAQESARDSRTAELQRKSTEGGIVQQNKAKAELAQHLAEDPLPLRKAKITLEAALKRAEK 251
[Close]
BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: L8H4K6_ACACA (TolAlike protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H4K6_ACACA)

HSP 1 Score: 84.3 bits (207), Expect = 2.250e-16
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:  274 KAAAAELAAALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            KAA  E+ AALA+V  QE A + RT EL+RKS EGG+V +N+AK ELAQHLAEDPLPLR+AKIT EAA KRA+K
Sbjct:  171 KAAQEEVDAALADVNAQESARDNRTAELQRKSTEGGIVQQNKAKAELAQHLAEDPLPLRKAKITLEAALKRAEK 244
[Close]
BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Match: L8H1H5_ACACA (F_actin_bund_C domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H1H5_ACACA)

HSP 1 Score: 83.2 bits (204), Expect = 7.010e-16
Identity = 43/58 (74.14%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:  322 QEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLRRAKITAEAASKRADK 495
            QEDAYN +T++L+++SEEGGVV RN+AKNELAQHL EDPLPLR+AKIT EAA K+AD+
Sbjct:  193 QEDAYNHKTEDLKKRSEEGGVVQRNKAKNELAQHLGEDPLPLRKAKITQEAAVKKADR 250
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111614.2413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4HNK8_9EUKA9.680e-2176.81Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A7S4JXR2_9EUKA5.160e-1973.68Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
L8GVG0_ACACA1.150e-1872.97TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
A0A6U1WWW6_9EUKA1.120e-1773.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4JXC6_9EUKA2.540e-1773.13Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A7S4JXG1_9EUKA3.360e-1773.53Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
L8H398_ACACA7.260e-1768.92TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
L8H5F3_ACACA1.050e-1668.92TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
L8H4K6_ACACA2.250e-1668.92TolAlike protein n=1 Tax=Acanthamoeba castellanii ... [more]
L8H1H5_ACACA7.010e-1674.14F_actin_bund_C domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111614contigM-pyrifera_M_contig111614:26..580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.2
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog46681.XP_001733992.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2C4AB@1,2S2VG@2759,3XC0R@554915
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
Exons2
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815628.577088-CDS-M-pyrifera_M_contig111614:25..2891622815628.577088-CDS-M-pyrifera_M_contig111614:25..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111614 26..289 +
1692277495.007382-CDS-M-pyrifera_M_contig111614:25..2891692277495.007382-CDS-M-pyrifera_M_contig111614:25..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111614 26..289 +
1622815628.587138-CDS-M-pyrifera_M_contig111614:349..5801622815628.587138-CDS-M-pyrifera_M_contig111614:349..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111614 350..580 +
1692277495.0178776-CDS-M-pyrifera_M_contig111614:349..5801692277495.0178776-CDS-M-pyrifera_M_contig111614:349..580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111614 350..580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111614.2413.1prot_M-pyrifera_M_contig111614.2413.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111614 26..580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111614.2413.1

>prot_M-pyrifera_M_contig111614.2413.1 ID=prot_M-pyrifera_M_contig111614.2413.1|Name=mRNA_M-pyrifera_M_contig111614.2413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=165bp
ARASEARQALIEAQSREAEAKRREEEALAAEAEAKAAEAAALEAEANAKA
REAEARAAESEAKAREAEALAAEEQAKSREAEAHASAESAAKAAAAELAA
ALAEVQKQEDAYNARTKELERKSEEGGVVSRNRAKNELAQHLAEDPLPLR
RAKITAEAASKRADK
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mRNA from alignment at M-pyrifera_M_contig111614:26..580+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111614.2413.1 ID=mRNA_M-pyrifera_M_contig111614.2413.1|Name=mRNA_M-pyrifera_M_contig111614.2413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=555bp|location=Sequence derived from alignment at M-pyrifera_M_contig111614:26..580+ (Macrocystis pyrifera P11B4 male)
GCGCGTGCCTCCGAGGCCCGCCAGGCCCTCATCGAGGCCCAGTCTCGCGA
GGCCGAGGCCAAGAGGCGCGAGGAGGAAGCCCTCGCCGCCGAGGCCGAGG
CCAAGGCCGCCGAGGCCGCCGCCCTCGAGGCAGAGGCCAACGCCAAGGCC
CGCGAGGCCGAGGCCAGGGCCGCCGAGTCCGAGGCCAAGGCCCGCGAGGC
CGAGGCCCTCGCCGCCGAGGAGCAGGCCAAGTCGCGTGAGGCCGAGGCCC
ACGCCTCCGCTGAGGTCGCCAAGCAGACCGAGACTGCTGCAAAGGCTTCT
GCCGCCGCCGCCGTGGACACGGAGTCCGCCGCCAAGGCCGCCGCCGCCGA
GCTTGCCGCTGCCCTTGCAGAGGTGCAGAAGCAGGAGGACGCCTACAACG
CCAGGACGAAGGAGCTGGAGCGCAAGAGCGAGGAGGGAGGTGTCGTCTCC
CGCAACCGCGCCAAGAATGAGCTCGCCCAGCACCTCGCCGAGGACCCCCT
TCCCCTCCGCCGTGCCAAGATCACTGCCGAGGCCGCCTCCAAGAGGGCCG
ACAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111614:26..580+

>mRNA_M-pyrifera_M_contig111614.2413.1 ID=mRNA_M-pyrifera_M_contig111614.2413.1|Name=mRNA_M-pyrifera_M_contig111614.2413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=990bp|location=Sequence derived from alignment at M-pyrifera_M_contig111614:26..580+ (Macrocystis pyrifera P11B4 male)
GCGCGTGCCTCCGAGGCCCGCCAGGCCCTCATCGAGGCCCAGTCTCGCGA
GGCCGAGGCCAAGAGGCGCGAGGAGGAAGCCCTCGCCGCCGAGGCCGAGG
CCAAGGCCGCCGAGGCCGCCGCCCTCGAGGCAGAGGCCAACGCCAAGGCC
CGCGAGGCCGAGGCCAGGGCCGCCGAGTCCGAGGCCAAGGCCCGCGAGGC
CGAGGCCCTCGCCGCCGAGGAGCAGGCCAAGTCGCGTGAGGCCGAGGCCC
ACGCCTCCGCTGAGGCGCGTGCCTCCGAGGCCCGCCAGGCCCTCATCGAG
GCCCAGTCTCGCGAGGCCGAGGCCAAGAGGCGCGAGGAGGAAGCCCTCGC
CGCCGAGGCCGAGGCCAAGGCCGCCGAGGCCGCCGCCCTCGAGGCAGAGG
CCAACGCCAAGGCCCGCGAGGCCGAGGCCAGGGCCGCCGAGTCCGAGGCC
AAGGCCCGCGAGGCCGAGGCCCTCGCCGCCGAGGAGCAGGCCAAGTCGCG
TGAGGCCGAGGCCCACGCCTCCGCTGAGTCCGCCGCCAAGGCCGCCGCCG
CCGAGCTTGCCGCTGCCCTTGCAGAGGTGCAGAAGCAGGAGGACGCCTAC
AACGCCAGGACGAAGGAGCTGGAGCGCAAGAGCGAGGAGGGAGGTGTCGT
CTCCCGCAACCGCGCCAAGAATGAGCTCGCCCAGCACCTCGCCGAGGACC
CCCTTCCCCTCCGCCGTGCCAAGATCACTGCCGAGGCCGCCTCCAAGAGG
GCCGACAAGTCCGCCGCCAAGGCCGCCGCCGCCGAGCTTGCCGCTGCCCT
TGCAGAGGTGCAGAAGCAGGAGGACGCCTACAACGCCAGGACGAAGGAGC
TGGAGCGCAAGAGCGAGGAGGGAGGTGTCGTCTCCCGCAACCGCGCCAAG
AATGAGCTCGCCCAGCACCTCGCCGAGGACCCCCTTCCCCTCCGCCGTGC
CAAGATCACTGCCGAGGCCGCCTCCAAGAGGGCCGACAAG
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