mRNA_M-pyrifera_M_contig111518.2394.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111518.2394.1
Unique NamemRNA_M-pyrifera_M_contig111518.2394.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111518.2394.1 vs. uniprot
Match: A0A507E5L5_9FUNG (Kri1_C domain-containing protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E5L5_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 2.400e-8
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = 1 
Query:   76 DELAYDVGEEFERRHNFRYEEDGGTEIAAHPRIIEGTARQKKESKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELE---EMVGG---GVDPKVLKKIIKEAEKDGEWNEDKFNKLMEKAFSEEYYDAEEEDL 474
            DE A D  E+FER HNFR+EE+G T+I  H R IEGT R+K + ++XXXXXXXXXXXXXXXXXXXXXXXXXXXX     K LE   E+ GG   G+D         E + + +++ ++F+K M  AF E YY+ EE DL
Sbjct:  255 DEEAVDEAEDFERTHNFRFEEEGATDIVTHARDIEGTMRRKDDKRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEEIRKRLEQIKEIAGGDFAGLD---------EVDLENDFDPNEFDKKMSAAFDESYYEQEEGDL 384
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BLAST of mRNA_M-pyrifera_M_contig111518.2394.1 vs. uniprot
Match: A0A0L0HPT9_SPIPD (Kri1_C domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HPT9_SPIPD)

HSP 1 Score: 60.1 bits (144), Expect = 1.490e-7
Identity = 74/160 (46.25%), Postives = 103/160 (64.38%), Query Frame = 1 
Query:    1 WEEKSGKKERVVTVDGEAVVDFEEADELAYDVGEEFERRHNFRYEEDGGTEIAAHPRIIEGTARQKKESKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELEEM--VGGGVDPKVLKKIIKEAEKDGEWNEDKFNKLMEKAFSEEYYDAEEEDL 474
            W +K  +K   +    E V D EE DE A +  EEFER+HNFR+EE+G  +I  H R IEGT R+K + ++     XXXXXXXXXXXXXXXXXXXXXXX     K LE++  + GG D   L ++  + EKD  ++ ++F++ M +AF+E YY+ E+ D+
Sbjct:  231 WVDKEAQK---IPTYNEVVGDIEE-DEEAVEAAEEFERQHNFRFEEEGAFDIVTHARNIEGTIRRKDDKRKRQREAXXXXXXXXXXXXXXXXXXXXXXXKEEIRKRLEQIRQIAGG-DVVGLNEV--DLEKD--FDPEEFDQKMAEAFNEGYYNDEDGDI 381
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BLAST of mRNA_M-pyrifera_M_contig111518.2394.1 vs. uniprot
Match: A0A1Y1VMB5_9FUNG (Krr1-domain-containing protein n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VMB5_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 2.030e-5
Identity = 63/164 (38.41%), Postives = 97/164 (59.15%), Query Frame = 1 
Query:    1 WEEKSGKKERVVTVDGEAVVDFEEADELAYDVGEEFERRHNFRYEEDGGTEIAAHPRIIEGTARQKKESKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KELEEMVGG---GVDPKVLKKIIKEAEKDGEWNEDKFNKLMEKAFSEEYYDAEEEDL 474
            W EK  KK+   ++D E + D    DE   D  + FE ++NFR+EE+GGT++  H R IE + R+K  S++ XXXXXXXXXXXXXXXXXXX                K+++E+ G    G D         + + DG++N+++++K ME  F++EYY+ E+ ++
Sbjct:  258 WIEKD-KKKNPFSLDTEEISD----DEEEVDKADRFESQYNFRFEEEGGTQLITHSRNIEDSMRRKNNSRKQXXXXXXXXXXXXXXXXXXXLKRLKNLKKQEIINKLKQIQEITGNKNVGFD---------DIDLDGDFNQEEYDKKMENIFNDEYYNDEDANI 407
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BLAST of mRNA_M-pyrifera_M_contig111518.2394.1 vs. uniprot
Match: UPI001CF0F9CD (protein KRI1 homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI001CF0F9CD)

HSP 1 Score: 53.9 bits (128), Expect = 2.050e-5
Identity = 67/141 (47.52%), Postives = 95/141 (67.38%), Query Frame = 1 
Query:   49 EAVVDFEEADELAYDVGEEFERRHNFRYEEDGGTEIAAHPRIIEGTARQKKESKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKELEEMVGGGVDPKVLKKIIKEAEKDGEWNEDKFNKLMEKAFSEEYYDAEEED 471
            E +V  EE D    +  EEFER++NFR+EE     I  +PR I+G+ R+  + ++   XXXXXXXXXXXXXXXXXXXXXXXXXXX   ++LE++     +P V     KE + DG+++  K++K ME+AF++E+YD  EE+
Sbjct:  268 EEIVAEEEQDMECIEKQEEFERKYNFRFEEPDAEFIKTYPRTIQGSVRKSDDRRKEKRXXXXXXXXXXXXXXXXXXXXXXXXXXXEIMEKLEKLKAITGNPNVG---FKEEDIDGDFDPKKYDKAMEEAFNQEFYDEGEEE 405
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BLAST of mRNA_M-pyrifera_M_contig111518.2394.1 vs. uniprot
Match: A0A507D0E1_9FUNG (Kri1_C domain-containing protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D0E1_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 7.030e-5
Identity = 61/160 (38.12%), Postives = 96/160 (60.00%), Query Frame = 1 
Query:    1 WEEKSGKKERVVTVDGEAVVDFEEADELAYDVGEEFERRHNFRYEEDGGTEIAAHPRIIEGTARQKKESKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---KELEEMVG-----GGVDPKVLKKIIKEAEKDGEWNEDKFNKLMEKAFSEEYYD 456
            W EK   K ++ T D       ++ DE A +  ++FE ++NFRYEE+G TEI  + R ++G+ R+K +++ XXXXXXXXXXXXXXXXXXXX                K+++E+ G     GG +  V    + + + +G++N ++ ++ M+K F+EEYYD
Sbjct:  255 WVEKD--KNKIPTYDEIMAEHHDDEDEEAVEAADDFEAKYNFRYEEEGATEITTYSRQVDGSLRRKNDARXXXXXXXXXXXXXXXXXXXXXLKRLKNLKKQEIWDRLKKIQEIAGLESGNGGSNLPVAG--LDDVDLEGDFNPEEHDQKMQKLFNEEYYD 410
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111518.2394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A507E5L5_9FUNG2.400e-853.24Kri1_C domain-containing protein n=1 Tax=Powellomy... [more]
A0A0L0HPT9_SPIPD1.490e-746.25Kri1_C domain-containing protein n=2 Tax=Spizellom... [more]
A0A1Y1VMB5_9FUNG2.030e-538.41Krr1-domain-containing protein n=1 Tax=Piromyces f... [more]
UPI001CF0F9CD2.050e-547.52protein KRI1 homolog n=2 Tax=Acropora TaxID=6127 R... [more]
A0A507D0E1_9FUNG7.030e-538.13Kri1_C domain-containing protein n=1 Tax=Synchytri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111518contigM-pyrifera_M_contig111518:73..555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score62.8
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog109760.SPPG_01901T0
Preferred namekri1
KEGG koko:K14786
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:1901360,GO:1990904
EggNOG free text desc.Ribosome biogenesis protein Kri1
EggNOG OGs38D56@33154,3P00B@4751,KOG2409@1,KOG2409@2759
COG Functional cat.J
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.6217391-CDS-M-pyrifera_M_contig111518:72..5551622815627.6217391-CDS-M-pyrifera_M_contig111518:72..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111518 73..555 -
1692277494.5155175-CDS-M-pyrifera_M_contig111518:72..5551692277494.5155175-CDS-M-pyrifera_M_contig111518:72..555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111518 73..555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111518.2394.1prot_M-pyrifera_M_contig111518.2394.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111518 73..555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111518.2394.1

>prot_M-pyrifera_M_contig111518.2394.1 ID=prot_M-pyrifera_M_contig111518.2394.1|Name=mRNA_M-pyrifera_M_contig111518.2394.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=161bp
WEEKSGKKERVVTVDGEAVVDFEEADELAYDVGEEFERRHNFRYEEDGGT
EIAAHPRIIEGTARQKKESKRKKERMRREEKAKEKEEELRKLRDLKREEE
RKKMKELEEMVGGGVDPKVLKKIIKEAEKDGEWNEDKFNKLMEKAFSEEY
YDAEEEDLHAV
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mRNA from alignment at M-pyrifera_M_contig111518:73..555-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111518.2394.1 ID=mRNA_M-pyrifera_M_contig111518.2394.1|Name=mRNA_M-pyrifera_M_contig111518.2394.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig111518:73..555- (Macrocystis pyrifera P11B4 male)
TGGGAGGAGAAGAGTGGAAAGAAGGAGAGGGTGGTGACAGTAGATGGTGA
AGCAGTGGTGGATTTTGAAGAAGCGGATGAGTTGGCATATGATGTAGGGG
AGGAATTTGAGCGTCGTCACAACTTTAGGTATGAAGAAGATGGAGGCACA
GAAATTGCTGCCCATCCTCGAATCATTGAAGGGACTGCAAGACAAAAGAA
GGAAAGCAAGCGAAAGAAGGAAAGGATGCGAAGAGAAGAAAAGGCAAAGG
AGAAGGAGGAAGAGTTGCGCAAGTTGCGAGATTTGAAGAGGGAAGAAGAG
AGGAAGAAGATGAAAGAGCTGGAAGAAATGGTGGGTGGAGGTGTGGATCC
AAAGGTATTGAAGAAAATCATCAAGGAAGCAGAAAAGGATGGAGAGTGGA
ACGAAGACAAATTCAACAAGCTCATGGAAAAGGCCTTTTCCGAAGAATAC
TACGACGCAGAAGAAGAAGACCTACATGCTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111518:73..555-

>mRNA_M-pyrifera_M_contig111518.2394.1 ID=mRNA_M-pyrifera_M_contig111518.2394.1|Name=mRNA_M-pyrifera_M_contig111518.2394.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=966bp|location=Sequence derived from alignment at M-pyrifera_M_contig111518:73..555- (Macrocystis pyrifera P11B4 male)
TGGGAGGAGAAGAGTGGAAAGAAGGAGAGGGTGGTGACAGTAGATGGTGA
AGCAGTGGTGGATTTTGAAGAAGCGGATGAGTTGGCATATGATGTAGGGG
AGGAATTTGAGCGTCGTCACAACTTTAGGTATGAAGAAGATGGAGGCACA
GAAATTGCTGCCCATCCTCGAATCATTGAAGGGACTGCAAGACAAAAGAA
GGAAAGCAAGCGAAAGAAGGAAAGGATGCGAAGAGAAGAAAAGGCAAAGG
AGAAGGAGGAAGAGTTGCGCAAGTTGCGAGATTTGAAGAGGGAAGAAGAG
AGGAAGAAGATGAAAGAGCTGGAAGAAATGGTGGGTGGAGGTGTGGATCC
AAAGGTATTGAAGAAAATCATCAAGGAAGCAGAAAAGGATGGAGAGTGGA
ACGAAGACAAATTCAACAAGCTCATGGAAAAGGCCTTTTCCGAAGAATAC
TACGACGCAGAAGAAGAAGACCTACATGCTGTCTGGGAGGAGAAGAGTGG
AAAGAAGGAGAGGGTGGTGACAGTAGATGGTGAAGCAGTGGTGGATTTTG
AAGAAGCGGATGAGTTGGCATATGATGTAGGGGAGGAATTTGAGCGTCGT
CACAACTTTAGGTATGAAGAAGATGGAGGCACAGAAATTGCTGCCCATCC
TCGAATCATTGAAGGGACTGCAAGACAAAAGAAGGAAAGCAAGCGAAAGA
AGGAAAGGATGCGAAGAGAAGAAAAGGCAAAGGAGAAGGAGGAAGAGTTG
CGCAAGTTGCGAGATTTGAAGAGGGAAGAAGAGAGGAAGAAGATGAAAGA
GCTGGAAGAAATGGTGGGTGGAGGTGTGGATCCAAAGGTATTGAAGAAAA
TCATCAAGGAAGCAGAAAAGGATGGAGAGTGGAACGAAGACAAATTCAAC
AAGCTCATGGAAAAGGCCTTTTCCGAAGAATACTACGACGCAGAAGAAGA
AGACCTACATGCTGTC
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