mRNA_M-pyrifera_M_contig111510.2392.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111510.2392.1
Unique NamemRNA_M-pyrifera_M_contig111510.2392.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A833R205_9POAL (Glutamate receptor 3.4-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R205_9POAL)

HSP 1 Score: 79.3 bits (194), Expect = 4.360e-15
Identity = 44/103 (42.72%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  L + V   IGP++SG S + +  A++  +PL+S SAT P+LSS   F YF R+T SD FQ +AIAD+V   Q RE+  +YV++ YG  G+  L ++L
Sbjct:   88 IEALQVLEKNVVAIIGPQSSGGSHILSHVANSLQVPLVSFSATDPTLSSLE-FPYFLRATRSDQFQMRAIADIVEFFQWREVTAIYVDDDYGRNGIAALGDEL 189
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A833R8L0_9POAL (Glutamate receptor n=2 Tax=Carex littledalei TaxID=544730 RepID=A0A833R8L0_9POAL)

HSP 1 Score: 74.3 bits (181), Expect = 2.590e-13
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  L + V   +GP++SG S + +   ++  +P++S SAT P+LSS   F YF R+T SD FQ +AIA++V+  Q R++  +YV++ YG  G+  L ++L
Sbjct:   88 IEALQVLEKNVVAIVGPQSSGASRILSHMVNSLQVPIVSFSATDPTLSSLE-FPYFLRATPSDQFQMRAIAEIVDFFQWRDVTAIYVDDDYGRNGIAALGDEL 189
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A2I4GX10_JUGRE (Glutamate receptor n=8 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GX10_JUGRE)

HSP 1 Score: 73.6 bits (179), Expect = 4.830e-13
Identity = 43/103 (41.75%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  + E+V   IGP++SG + V +  A+  H+PL+S +AT P+L++   + YF R+T SD FQ  AIADLV     RE+  +YV++ YG GG+ VL + L
Sbjct:  103 IEALQLMEEDVFAAIGPQSSGIAHVISHVANELHVPLLSFAATDPTLAALQ-YPYFVRTTQSDYFQMNAIADLVEYYGWREVIAIYVDDNYGRGGISVLGDAL 204
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A835RVM4_VANPL (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RVM4_VANPL)

HSP 1 Score: 72.4 bits (176), Expect = 1.200e-12
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  +A +V   IGP++SG + + + A    ++PL+S +AT P+LSS   + YF R+T SD FQ  A+AD+++    RE+  ++V++ YG GG+ VL + L
Sbjct:  393 IEALQLMANDVVAIIGPQSSGVAHIVSEAVSELNVPLLSFAATDPTLSS-SQYPYFLRTTQSDYFQMNAVADMIDYFGWREVIAIFVDDDYGRGGISVLGDAL 494
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A835S2U1_VANPL (2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835S2U1_VANPL)

HSP 1 Score: 72.4 bits (176), Expect = 1.240e-12
Identity = 39/103 (37.86%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  +A +V   IGP++SG + + + A    ++PL+S +AT P+LSS   + YF R+T SD FQ  A+AD+++    RE+  ++V++ YG GG+ VL + L
Sbjct:  443 IEALQLMANDVVAIIGPQSSGVAHIVSEAVSELNVPLLSFAATDPTLSS-SQYPYFLRTTQSDYFQMNAVADMIDYFGWREVIAIFVDDDYGRGGISVLGDAL 544
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A164ZK40_DAUCS (Glutamate receptor n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A164ZK40_DAUCS)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-12
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  + ++V   IGP++SG + V +   +  H+PL+S  AT P+LS+   F YF R+T SD FQ QAIADLV   + RE+  ++V++ YG  G+  L + L
Sbjct:   91 IEALQLMVDDVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLSALQ-FPYFLRTTQSDYFQMQAIADLVEYYKWREVIAIFVDDDYGRSGISALGDAL 192
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A4Y7IFQ7_PAPSO (Glutamate receptor n=3 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7IFQ7_PAPSO)

HSP 1 Score: 71.6 bits (174), Expect = 2.290e-12
Identity = 40/103 (38.83%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  + ++V   IGP++SG + V +      H+PL+S  AT P+LS+   +SYF R+T SD FQ QA+ADLV+    RE+  +Y+++ YG  G+  L + L
Sbjct:  111 IEALQLMEKDVVAIIGPQSSGIAHVISHVVEELHVPLLSFGATDPTLSALQ-YSYFIRTTQSDYFQMQAVADLVDFYGWREVIAIYLDDDYGRSGISALGDAL 212
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A7J0FFM9_9ERIC (Glutamate receptor n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FFM9_9ERIC)

HSP 1 Score: 71.2 bits (173), Expect = 3.110e-12
Identity = 41/103 (39.81%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:    4 LEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +E +  + ++V   IGP++SG + + +   +  H+PL+S SAT P+LS+   F YF R+T SD FQ  AIADLV     RE+  ++V++ YG  G+ VL + L
Sbjct:   82 IEALELMEKDVAAVIGPQSSGIAHIISHVVNELHVPLLSFSATDPTLSALQ-FPYFLRTTQSDYFQMYAIADLVEFYGWREVITIFVDDDYGRSGISVLGDAL 183
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A835SGA7_VANPL (PBPe domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835SGA7_VANPL)

HSP 1 Score: 70.5 bits (171), Expect = 5.710e-12
Identity = 38/97 (39.18%), Postives = 63/97 (64.95%), Query Frame = 1 
Query:   22 LAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            +A +V   IGP++SG + + + A    ++PL+S +AT P+LSS   + YF R+T SD FQ  A+AD+++    RE+  ++V++ YG GG+ VL + L
Sbjct:  124 MANDVVAIIGPQSSGVAHIVSEAVSELNVPLLSFAATDPTLSSLQ-YPYFLRTTQSDYFQMNAVADMIDYFGWREVIAIFVDDDYGRGGISVLGDAL 219
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BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Match: A0A1J3E3T8_NOCCA (Glutamate receptor 3.5 (Fragment) n=2 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3E3T8_NOCCA)

HSP 1 Score: 69.7 bits (169), Expect = 6.310e-12
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:   10 GIIELAE-EVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSSRGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVLSEQL 312
            G +++ E +V   IGP++SG   + +  A+  H+PL+S SAT P+LSS   + YF R+T +D FQ  AIAD V+  + RE+  ++V++ YG  G+ VL + L
Sbjct:  106 GALQVMENKVVAAIGPQSSGIGHIISHVANELHVPLLSFSATDPTLSSLQ-YPYFLRTTQNDYFQMNAIADFVSYCRWREVVAIFVDDEYGRNGISVLGDAL 206
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111510.2392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A833R205_9POAL4.360e-1542.72Glutamate receptor 3.4-like protein n=1 Tax=Carex ... [more]
A0A833R8L0_9POAL2.590e-1337.86Glutamate receptor n=2 Tax=Carex littledalei TaxID... [more]
A0A2I4GX10_JUGRE4.830e-1341.75Glutamate receptor n=8 Tax=Juglandaceae TaxID=1671... [more]
A0A835RVM4_VANPL1.200e-1237.862-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A835S2U1_VANPL1.240e-1237.862-C-methyl-D-erythritol 4-phosphate cytidylyltrans... [more]
A0A164ZK40_DAUCS2.290e-1239.81Glutamate receptor n=1 Tax=Daucus carota subsp. sa... [more]
A0A4Y7IFQ7_PAPSO2.290e-1238.83Glutamate receptor n=3 Tax=Papaver somniferum TaxI... [more]
A0A7J0FFM9_9ERIC3.110e-1239.81Glutamate receptor n=1 Tax=Actinidia rufa TaxID=16... [more]
A0A835SGA7_VANPL5.710e-1239.18PBPe domain-containing protein n=1 Tax=Vanilla pla... [more]
A0A1J3E3T8_NOCCA6.310e-1240.20Glutamate receptor 3.5 (Fragment) n=2 Tax=Noccaea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111510contigM-pyrifera_M_contig111510:140..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.3
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog4533.OB07G22390.1
KEGG koko:K05387
KEGG TC1.A.10.1.10,1.A.10.1.18,1.A.10.1.7
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0004888,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006950,GO:0007154,GO:0007165,GO:0008066,GO:0008150,GO:0008324,GO:0009266,GO:0009409,GO:0009507,GO:0009536,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009719,GO:0009987,GO:0010033,GO:0010034,GO:0010243,GO:0015075,GO:0015085,GO:0015267,GO:0015276,GO:0015318,GO:0016020,GO:0019722,GO:0019932,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0033554,GO:0034220,GO:0035556,GO:0038023,GO:0042221,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0046873,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0060089,GO:0065007,GO:0070417,GO:0070588,GO:0070838,GO:0070887,GO:0071214,GO:0071229,GO:0071230,GO:0071236,GO:0071260,GO:0071310,GO:0071311,GO:0071417,GO:0071495,GO:0071496,GO:0071944,GO:0072511,GO:0098655,GO:0098660,GO:0098662,GO:0104004,GO:1901698,GO:1901699,GO:1901700,GO:1901701
EggNOG free text desc.Glutamate-gated receptor that probably acts as non- selective cation channel
EggNOG OGs37J5Z@33090,3G89R@35493,3I9BY@38820,3KVXE@4447,KOG1052@1,KOG1052@2759
COG Functional cat.P
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.5444024-CDS-M-pyrifera_M_contig111510:139..4511622815627.5444024-CDS-M-pyrifera_M_contig111510:139..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111510 140..451 -
1692277494.4771454-CDS-M-pyrifera_M_contig111510:139..4511692277494.4771454-CDS-M-pyrifera_M_contig111510:139..451Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111510 140..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111510.2392.1prot_M-pyrifera_M_contig111510.2392.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111510 140..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111510.2392.1

>prot_M-pyrifera_M_contig111510.2392.1 ID=prot_M-pyrifera_M_contig111510.2392.1|Name=mRNA_M-pyrifera_M_contig111510.2392.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
MLEGIIELAEEVEVFIGPRTSGESIVAAWAAHTFHIPLISPSATTPSLSS
RGTFSYFFRSTASDSFQSQAIADLVNLLQVRELGVLYVNEAYGEGGLHVL
SEQL
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mRNA from alignment at M-pyrifera_M_contig111510:140..451-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111510.2392.1 ID=mRNA_M-pyrifera_M_contig111510.2392.1|Name=mRNA_M-pyrifera_M_contig111510.2392.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig111510:140..451- (Macrocystis pyrifera P11B4 male)
ATGTTGGAAGGAATTATTGAGCTTGCAGAGGAGGTGGAGGTGTTTATTGG
GCCACGGACGTCGGGAGAGAGTATTGTTGCAGCGTGGGCTGCGCATACGT
TCCATATTCCACTCATTTCCCCCTCTGCAACCACCCCATCCTTGTCTAGT
CGGGGCACGTTTTCGTACTTCTTCCGATCGACGGCATCTGACTCGTTTCA
GAGCCAAGCGATAGCGGATTTGGTAAATTTGCTGCAAGTGCGGGAATTGG
GGGTGTTGTATGTGAATGAGGCGTATGGGGAAGGTGGGTTGCATGTGTTG
TCGGAGCAGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111510:140..451-

>mRNA_M-pyrifera_M_contig111510.2392.1 ID=mRNA_M-pyrifera_M_contig111510.2392.1|Name=mRNA_M-pyrifera_M_contig111510.2392.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig111510:140..451- (Macrocystis pyrifera P11B4 male)
ATGTTGGAAGGAATTATTGAGCTTGCAGAGGAGGTGGAGGTGTTTATTGG
GCCACGGACGTCGGGAGAGAGTATTGTTGCAGCGTGGGCTGCGCATACGT
TCCATATTCCACTCATTTCCCCCTCTGCAACCACCCCATCCTTGTCTAGT
CGGGGCACGTTTTCGTACTTCTTCCGATCGACGGCATCTGACTCGTTTCA
GAGCCAAGCGATAGCGGATTTGGTAAATTTGCTGCAAGTGCGGGAATTGG
GGGTGTTGTATGTGAATGAGGCGTATGGGGAAGGTGGGTTGCATGTGTTG
TCGGAGCAGTTGATGTTGGAAGGAATTATTGAGCTTGCAGAGGAGGTGGA
GGTGTTTATTGGGCCACGGACGTCGGGAGAGAGTATTGTTGCAGCGTGGG
CTGCGCATACGTTCCATATTCCACTCATTTCCCCCTCTGCAACCACCCCA
TCCTTGTCTAGTCGGGGCACGTTTTCGTACTTCTTCCGATCGACGGCATC
TGACTCGTTTCAGAGCCAAGCGATAGCGGATTTGGTAAATTTGCTGCAAG
TGCGGGAATTGGGGGTGTTGTATGTGAATGAGGCGTATGGGGAAGGTGGG
TTGCATGTGTTGTCGGAGCAGTTG
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