mRNA_M-pyrifera_M_contig111492.2386.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111492.2386.1
Unique NamemRNA_M-pyrifera_M_contig111492.2386.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig111492.2386.1 vs. uniprot
Match: A0A2E7K726_9PLAN (Uncharacterized protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K726_9PLAN)

HSP 1 Score: 258 bits (658), Expect = 3.150e-85
Identity = 131/142 (92.25%), Postives = 132/142 (92.96%), Query Frame = 1 
Query:    1 WACLSQHIDRSLKFRCSQTRGSSSTLLCPPWSEVIPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRIRDGCPAAMAIISGDGSELVTIFYNLSLLDAPFSDDPRLEL---LKHLACLTQDSRFTRKFERDFDASSADSP 417
            WACLSQHIDRSLKFR SQTRGSSSTLL PPWSEVIPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRIRDGCPAAMAIISGDGSE VT+ YNLSLLDAPFSDDPRLEL   LKHLACLT DSRFTRKFE DFDASS DSP
Sbjct:   96 WACLSQHIDRSLKFRNSQTRGSSSTLLYPPWSEVIPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRIRDGCPAAMAIISGDGSEPVTVVYNLSLLDAPFSDDPRLELFELLKHLACLTDDSRFTRKFELDFDASSTDSP 237
[Close]
BLAST of mRNA_M-pyrifera_M_contig111492.2386.1 vs. uniprot
Match: UPI00119ECFD0 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00119ECFD0)

HSP 1 Score: 195 bits (496), Expect = 1.970e-62
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 1 
Query:  100 VIPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRIRDGCPAAMAIISGDGSELVTIFYNLSLLDAPFSDDPRLELLKHLACLTQDSRFTRKFERDFDASSADSP 417
            +IPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRI+DGCPAAMAIISGDGS+ VT+ YNLSLLDAPFSDDPRLELLKHLACLT DSRFTRKFE DFDASS DSP
Sbjct:    1 MIPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRIKDGCPAAMAIISGDGSKPVTVVYNLSLLDAPFSDDPRLELLKHLACLTDDSRFTRKFELDFDASSTDSP 106
[Close]
BLAST of mRNA_M-pyrifera_M_contig111492.2386.1 vs. uniprot
Match: A0A517QCW3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517QCW3_9PLAN)

HSP 1 Score: 118 bits (295), Expect = 5.740e-30
Identity = 66/139 (47.48%), Postives = 92/139 (66.19%), Query Frame = 1 
Query:    1 WACLSQHIDRSLKFRCSQTRGSSSTLLCPPWSEVIPHEKDLTPDQSGTLRQLIQESIQRGKQPIRIEQRIRDGCPAAMAIISGDGSELVTIFYNLSLLDAPFSDDPRLELLKHLACLTQDSRFTRKFERDFDASSADSP 417
            WA L+   + +L  + S++  S S    P WSEV   E  LT +Q  +++ LI E+  +G Q I++E RI+DG PAA+AII GDGSE +TI+Y LSLL+A  S++PRLELLK  A LT D   TR+   +F+A+SA+SP
Sbjct:  130 WARLTLDHEGNLLLKQSRSPRSISAFSTPAWSEVTTTEVTLTSEQKTSIQTLIHEATAQGNQKIQMENRIKDGFPAALAIILGDGSEPITIYYYLSLLEASSSENPRLELLKIFAFLTGDFGCTRRLGSEFNANSANSP 268
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111492.2386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E7K726_9PLAN3.150e-8592.25Uncharacterized protein n=5 Tax=Gimesia TaxID=1649... [more]
UPI00119ECFD01.970e-6291.51hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
A0A517QCW3_9PLAN5.740e-3047.48Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111492contigM-pyrifera_M_contig111492:171..590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.2960007-CDS-M-pyrifera_M_contig111492:170..5901622815627.2960007-CDS-M-pyrifera_M_contig111492:170..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111492 171..590 -
1692277494.3763123-CDS-M-pyrifera_M_contig111492:170..5901692277494.3763123-CDS-M-pyrifera_M_contig111492:170..590Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111492 171..590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111492.2386.1prot_M-pyrifera_M_contig111492.2386.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111492 171..590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111492.2386.1

>prot_M-pyrifera_M_contig111492.2386.1 ID=prot_M-pyrifera_M_contig111492.2386.1|Name=mRNA_M-pyrifera_M_contig111492.2386.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=140bp
WACLSQHIDRSLKFRCSQTRGSSSTLLCPPWSEVIPHEKDLTPDQSGTLR
QLIQESIQRGKQPIRIEQRIRDGCPAAMAIISGDGSELVTIFYNLSLLDA
PFSDDPRLELLKHLACLTQDSRFTRKFERDFDASSADSP*
back to top

mRNA from alignment at M-pyrifera_M_contig111492:171..590-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111492.2386.1 ID=mRNA_M-pyrifera_M_contig111492.2386.1|Name=mRNA_M-pyrifera_M_contig111492.2386.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig111492:171..590- (Macrocystis pyrifera P11B4 male)
TGGGCATGCCTCTCCCAGCATATAGATCGATCTTTAAAATTCAGATGCTC
ACAGACACGTGGTTCCAGTTCTACGCTTCTATGTCCCCCCTGGAGTGAAG
TGATTCCTCATGAAAAAGATTTGACTCCCGATCAGAGTGGAACATTACGA
CAGCTGATTCAAGAATCAATTCAACGGGGTAAACAACCGATTCGGATCGA
ACAACGAATCAGAGATGGATGCCCTGCTGCAATGGCTATAATCTCTGGAG
ATGGTTCCGAGCTAGTCACTATTTTTTACAACTTGAGTTTGCTCGATGCC
CCGTTCTCAGATGATCCTCGTCTCGAACTTTTAAAGCACCTGGCATGTCT
GACGCAAGACTCCCGTTTTACCAGAAAATTTGAACGGGATTTCGATGCAA
GTTCTGCAGATAGTCCCTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111492:171..590-

>mRNA_M-pyrifera_M_contig111492.2386.1 ID=mRNA_M-pyrifera_M_contig111492.2386.1|Name=mRNA_M-pyrifera_M_contig111492.2386.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=840bp|location=Sequence derived from alignment at M-pyrifera_M_contig111492:171..590- (Macrocystis pyrifera P11B4 male)
TGGGCATGCCTCTCCCAGCATATAGATCGATCTTTAAAATTCAGATGCTC
ACAGACACGTGGTTCCAGTTCTACGCTTCTATGTCCCCCCTGGAGTGAAG
TGATTCCTCATGAAAAAGATTTGACTCCCGATCAGAGTGGAACATTACGA
CAGCTGATTCAAGAATCAATTCAACGGGGTAAACAACCGATTCGGATCGA
ACAACGAATCAGAGATGGATGCCCTGCTGCAATGGCTATAATCTCTGGAG
ATGGTTCCGAGCTAGTCACTATTTTTTACAACTTGAGTTTGCTCGATGCC
CCGTTCTCAGATGATCCTCGTCTCGAACTTTTAAAGCACCTGGCATGTCT
GACGCAAGACTCCCGTTTTACCAGAAAATTTGAACGGGATTTCGATGCAA
GTTCTGCAGATAGTCCCTGATGGGCATGCCTCTCCCAGCATATAGATCGA
TCTTTAAAATTCAGATGCTCACAGACACGTGGTTCCAGTTCTACGCTTCT
ATGTCCCCCCTGGAGTGAAGTGATTCCTCATGAAAAAGATTTGACTCCCG
ATCAGAGTGGAACATTACGACAGCTGATTCAAGAATCAATTCAACGGGGT
AAACAACCGATTCGGATCGAACAACGAATCAGAGATGGATGCCCTGCTGC
AATGGCTATAATCTCTGGAGATGGTTCCGAGCTAGTCACTATTTTTTACA
ACTTGAGTTTGCTCGATGCCCCGTTCTCAGATGATCCTCGTCTCGAACTT
TTAAAGCACCTGGCATGTCTGACGCAAGACTCCCGTTTTACCAGAAAATT
TGAACGGGATTTCGATGCAAGTTCTGCAGATAGTCCCTGA
back to top