mRNA_M-pyrifera_M_contig111440.2374.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111440.2374.1
Unique NamemRNA_M-pyrifera_M_contig111440.2374.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A137NX01_CONC2 (Eukaryotic translation initiation factor 4E type 3 n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137NX01_CONC2)

HSP 1 Score: 126 bits (317), Expect = 2.550e-34
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    4 PVPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGE 318
            PVPLQ +WCFW DK V  +   + YE +L+ +CTV TVQ+FW A+N L    K+  ++SLH MK GI+P+WEDP N +GG W++RV KDDT+ +W ++ M A GE
Sbjct:   13 PVPLQNKWCFWHDKYVPSSDN-DNYESNLNVICTVNTVQEFWSAYNHLIPPDKLVTRNSLHFMKEGIKPIWEDPKNANGGAWSIRVDKDDTKAVWPEVLMLAIGE 116
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BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: UPI00201ED20A (eukaryotic translation initiation factor 4E type 3 isoform X3 n=1 Tax=Bombus terrestris TaxID=30195 RepID=UPI00201ED20A)

HSP 1 Score: 120 bits (301), Expect = 2.220e-32
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    7 VPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQF-DCILE 339
            +PLQ  W FW+DK +SG  T E+Y+E+L  + TV TVQ FW  FN +P    ++ + S H+M+    PLWE+P+N +GG W ++  K DT+ IW ++ +AA GEQF DC+ E
Sbjct:   37 IPLQSSWTFWLDKAISGT-TVEEYKENLTKIYTVNTVQSFWAVFNNIPNASAVQVRYSYHLMRDERYPLWEEPINQNGGTWRLKCHKSDTEKIWKEIVLAAIGEQFTDCVAE 147
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BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: UPI00083FFECA (eukaryotic translation initiation factor 4E type 3-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI00083FFECA)

HSP 1 Score: 121 bits (304), Expect = 2.390e-32
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 1 
Query:    7 VPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQF-DCILE 339
            +PLQ  W FW+D+ +SG  T E+Y+++L  + TV TVQ FW  FN +P    ++ + S H+M+    PLWE+P+N +GG W ++  K DT+TIW ++ +AA GEQF DC++E
Sbjct:   38 IPLQSAWTFWLDRAISGT-TVEEYKQNLTKIYTVNTVQSFWAVFNNIPKASAVQVRYSYHLMRDERYPLWEEPINQNGGTWRLKCYKSDTETIWKEMVLAAIGEQFADCVME 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A7M7R4Y3_APIME (eukaryotic translation initiation factor 4E type 3-A n=3 Tax=Apis TaxID=7459 RepID=A0A7M7R4Y3_APIME)

HSP 1 Score: 120 bits (302), Expect = 4.780e-32
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    7 VPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQF-DCILE 339
            +PLQ  W FW+DK +SG  T E+Y+E+L  + TV TVQ FW  FN +P V  ++ + S H+M+    PLWE+P+N +GG W ++  K DT+ IW ++ +AA GEQF +C+ E
Sbjct:   38 IPLQSSWTFWLDKAISGT-TVEEYKENLTKIYTVNTVQSFWAVFNNIPSVSAVQVRYSYHLMRDERYPLWEEPVNQNGGTWRLKCHKSDTEKIWKEMVLAAIGEQFAECVAE 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: UPI000252B31E (eukaryotic translation initiation factor 4E type 3 n=1 Tax=Apis florea TaxID=7463 RepID=UPI000252B31E)

HSP 1 Score: 120 bits (302), Expect = 4.780e-32
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    7 VPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQF-DCILE 339
            +PLQ  W FW+DK +SG  T E+Y+E+L  + TV TVQ FW  FN +P V  ++ + S H+M+    PLWE+P+N +GG W ++  K DT+ IW ++ +AA GEQF +C+ E
Sbjct:   38 IPLQSSWTFWLDKAISGT-TVEEYKENLTKIYTVNTVQSFWAVFNNIPSVNAIQVRYSYHLMRDERYPLWEEPINQNGGTWRLKCHKSDTEKIWKEMVLAAIGEQFAECVAE 148
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A6P3DCC6_BOMTE (eukaryotic translation initiation factor 4E type 3 isoform X2 n=8 Tax=Bombus TaxID=28641 RepID=A0A6P3DCC6_BOMTE)

HSP 1 Score: 120 bits (301), Expect = 6.580e-32
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    7 VPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQF-DCILE 339
            +PLQ  W FW+DK +SG  T E+Y+E+L  + TV TVQ FW  FN +P    ++ + S H+M+    PLWE+P+N +GG W ++  K DT+ IW ++ +AA GEQF DC+ E
Sbjct:   37 IPLQSSWTFWLDKAISGT-TVEEYKENLTKIYTVNTVQSFWAVFNNIPNASAVQVRYSYHLMRDERYPLWEEPINQNGGTWRLKCHKSDTEKIWKEIVLAAIGEQFTDCVAE 147
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A6P3E1F7_BOMIM (eukaryotic translation initiation factor 4E type 3 isoform X2 n=4 Tax=Apinae TaxID=70987 RepID=A0A6P3E1F7_BOMIM)

HSP 1 Score: 120 bits (301), Expect = 8.100e-32
Identity = 51/112 (45.54%), Postives = 74/112 (66.07%), Query Frame = 1 
Query:    7 VPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQF-DCILE 339
            +PLQ  W FW+DK +SG  T E+Y+E+L  + TV TVQ FW  FN +P    ++ + S H+M+    PLWE+P+N +GG W ++  K DT+ IW ++ +AA GEQF DC+ E
Sbjct:   45 IPLQSSWTFWLDKAISGT-TVEEYKENLTKIYTVNTVQSFWAVFNNIPNASAVQVRYSYHLMRDERYPLWEEPVNQNGGTWRLKCHKSDTEKIWKEIVLAAIGEQFTDCVAE 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A1Y1XB25_9FUNG (Eukaryotic translation initiation factor 4E family member 3 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XB25_9FUNG)

HSP 1 Score: 119 bits (298), Expect = 1.510e-31
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 EPVPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQFDCILE 339
            E +PLQ  W FW DK V     A  YE +L NL TV TVQ+FW  +N L    K++ K+SLH MK GI+P+WEDP N  GG +  RVKK+D+  IW +L M   GEQF+  L+
Sbjct:   24 EAIPLQHEWTFWHDKFVYSQ-NASDYETNLQNLYTVSTVQEFWRVYNNLLTPDKLQNKNSLHFMKKGIKPIWEDPKNEYGGSYCFRVKKEDSNVIWRELLMLIIGEQFEDTLQ 135
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A015JMD8_RHIIW (Cdc33p n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A015JMD8_RHIIW)

HSP 1 Score: 117 bits (292), Expect = 3.060e-30
Identity = 52/112 (46.43%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 EPVPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQFDCIL 336
            E  PL   W F+ DK V+ NAT E+YEE+L ++ TV TVQ FW  +N +    +++ +SSLH MK GIRP+WEDP N +GG W+ RV K +++ +W +L M   GEQF+ ++
Sbjct:   55 EQYPLTNEWTFYHDKYVA-NATPEEYEENLKSVATVNTVQSFWSVYNNIIGPDQLQFRSSLHFMKSGIRPVWEDPHNENGGAWSFRVNKSESKIVWRELLMLLIGEQFEDVV 165
[Close]
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Match: A0A1D1XZK2_9ARAE (mRNA cap-binding protein n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XZK2_9ARAE)

HSP 1 Score: 115 bits (289), Expect = 8.030e-30
Identity = 51/109 (46.79%), Postives = 73/109 (66.97%), Query Frame = 1 
Query:   10 PLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLPLVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLCMAASGEQFDCIL 336
            PL   W F+ DK V+ NAT E+YEE+L ++ TV TVQ FW  +N +    +++ +SSLH MK GIRP+WEDP N +GG W+ R  K D++ +W +L M   GEQF+ ++
Sbjct:   55 PLTNEWTFYHDKYVA-NATPEEYEENLKSVATVNTVQSFWSVYNNIIGPEQLQFRSSLHFMKSGIRPVWEDPHNENGGAWSFRANKSDSKVVWRELLMLLIGEQFEDVV 162
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111440.2374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A137NX01_CONC22.550e-3451.43Eukaryotic translation initiation factor 4E type 3... [more]
UPI00201ED20A2.220e-3245.54eukaryotic translation initiation factor 4E type 3... [more]
UPI00083FFECA2.390e-3244.64eukaryotic translation initiation factor 4E type 3... [more]
A0A7M7R4Y3_APIME4.780e-3245.54eukaryotic translation initiation factor 4E type 3... [more]
UPI000252B31E4.780e-3245.54eukaryotic translation initiation factor 4E type 3... [more]
A0A6P3DCC6_BOMTE6.580e-3245.54eukaryotic translation initiation factor 4E type 3... [more]
A0A6P3E1F7_BOMIM8.100e-3245.54eukaryotic translation initiation factor 4E type 3... [more]
A0A1Y1XB25_9FUNG1.510e-3149.56Eukaryotic translation initiation factor 4E family... [more]
A0A015JMD8_RHIIW3.060e-3046.43Cdc33p n=7 Tax=Rhizophagus TaxID=1129544 RepID=A0A... [more]
A0A1D1XZK2_9ARAE8.030e-3046.79mRNA cap-binding protein n=1 Tax=Anthurium amnicol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111440contigM-pyrifera_M_contig111440:118..560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score118.6
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog7460.GB44755-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.initiation factor 4E
EggNOG OGs39JMS@33154,3CNW5@33208,3E5G5@33213,3SMUK@50557,41Z2B@6656,46K3T@7399,COG5053@1,KOG1669@2759
COG Functional cat.J
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons2
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815626.5605955-CDS-M-pyrifera_M_contig111440:117..3391622815626.5605955-CDS-M-pyrifera_M_contig111440:117..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111440 118..339 -
1692277494.0273533-CDS-M-pyrifera_M_contig111440:117..3391692277494.0273533-CDS-M-pyrifera_M_contig111440:117..339Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111440 118..339 -
1622815626.5726771-CDS-M-pyrifera_M_contig111440:440..5601622815626.5726771-CDS-M-pyrifera_M_contig111440:440..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111440 441..560 -
1692277494.0388877-CDS-M-pyrifera_M_contig111440:440..5601692277494.0388877-CDS-M-pyrifera_M_contig111440:440..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111440 441..560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111440.2374.1prot_M-pyrifera_M_contig111440.2374.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111440 118..560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111440.2374.1

>prot_M-pyrifera_M_contig111440.2374.1 ID=prot_M-pyrifera_M_contig111440.2374.1|Name=mRNA_M-pyrifera_M_contig111440.2374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
EPVPLQERWCFWVDKPVSGNATAEQYEESLHNLCTVQTVQDFWGAFNTLP
LVGKMRAKSSLHMMKFGIRPLWEDPMNVDGGFWAMRVKKDDTQTIWADLC
MAASGEQFDCILE*
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mRNA from alignment at M-pyrifera_M_contig111440:118..560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111440.2374.1 ID=mRNA_M-pyrifera_M_contig111440.2374.1|Name=mRNA_M-pyrifera_M_contig111440.2374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=443bp|location=Sequence derived from alignment at M-pyrifera_M_contig111440:118..560- (Macrocystis pyrifera P11B4 male)
GAGCCCGTGCCGCTGCAGGAACGCTGGTGCTTCTGGGTAGACAAGCCGGT
GAGCGGCAACGCCACTGCAGAACAGTACGAGGAGTCGTTGCACAACCTCT
GCACCGTCCAGACCGTCCAGGTGCGCCGCCGCCTCTTCCCTCCCCGCCTC
CCCGCGCCGCGGCCGCGGCCTCCCGAGAGGCGCTCGGGGCAGGGGCCAGA
GCAAAAGCTGACGAGGGGCAGGACTTCTGGGGTGCGTTCAACACCCTGCC
GCTGGTGGGCAAGATGCGGGCGAAGTCCAGTCTTCACATGATGAAATTTG
GCATCCGCCCCCTCTGGGAGGATCCCATGAACGTCGACGGCGGCTTCTGG
GCAATGCGCGTCAAGAAGGACGACACACAGACCATCTGGGCGGACCTTTG
CATGGCTGCCAGCGGCGAGCAGTTCGACTGCATCCTTGAGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111440:118..560-

>mRNA_M-pyrifera_M_contig111440.2374.1 ID=mRNA_M-pyrifera_M_contig111440.2374.1|Name=mRNA_M-pyrifera_M_contig111440.2374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig111440:118..560- (Macrocystis pyrifera P11B4 male)
GAGCCCGTGCCGCTGCAGGAACGCTGGTGCTTCTGGGTAGACAAGCCGGT
GAGCGGCAACGCCACTGCAGAACAGTACGAGGAGTCGTTGCACAACCTCT
GCACCGTCCAGACCGTCCAGGAGCCCGTGCCGCTGCAGGAACGCTGGTGC
TTCTGGGTAGACAAGCCGGTGAGCGGCAACGCCACTGCAGAACAGTACGA
GGAGTCGTTGCACAACCTCTGCACCGTCCAGACCGTCCAGGACTTCTGGG
GTGCGTTCAACACCCTGCCGCTGGTGGGCAAGATGCGGGCGAAGTCCAGT
CTTCACATGATGAAATTTGGCATCCGCCCCCTCTGGGAGGATCCCATGAA
CGTCGACGGCGGCTTCTGGGCAATGCGCGTCAAGAAGGACGACACACAGA
CCATCTGGGCGGACCTTTGCATGGCTGCCAGCGGCGAGCAGTTCGACTGC
ATCCTTGAGTAGGACTTCTGGGGTGCGTTCAACACCCTGCCGCTGGTGGG
CAAGATGCGGGCGAAGTCCAGTCTTCACATGATGAAATTTGGCATCCGCC
CCCTCTGGGAGGATCCCATGAACGTCGACGGCGGCTTCTGGGCAATGCGC
GTCAAGAAGGACGACACACAGACCATCTGGGCGGACCTTTGCATGGCTGC
CAGCGGCGAGCAGTTCGACTGCATCCTTGAGTAG
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